HHsearch alignment for GI: 254780771 and conserved domain: TIGR02287
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY; InterPro: IPR011974 Members of this family are located next to other genes organised into apparent operons for phenylacetic acid degradation . PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator..
Probab=99.26 E-value=5.7e-12 Score=83.76 Aligned_cols=125 Identities=14% Similarity=0.264 Sum_probs=76.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEHHHCCCCCC---------EEEECCCCCCCCHHC----CCCCCCCCCCCCEEEEEEE
Q ss_conf 654333100156532334420000110011232---------033112210000000----2332100233220233100
Q gi|254780771|r 115 FEGGISPQAFLGEDVKIEDGVVIAPMAVVYPGV---------EIGRKTYVGPGSVIG----AGVRIGRNCSIGAGSSIYS 181 (347)
Q Consensus 115 ~~~~I~~~a~I~~~a~I~~~v~I~~~~~I~~~v---------~IG~~~~I~~~~~I~----~~~~IG~~~~I~~~~~I~~ 181 (347)
T Consensus 7 LtPVVhp~ayVHP~AVLiGDVi~G~rcYvgPlASLRGDFGrIvl~eGAN~QD~CVMHGFPg~DTvVeenGHvGHgAiLHg 86 (193)
T TIGR02287 7 LTPVVHPEAYVHPDAVLIGDVIVGKRCYVGPLASLRGDFGRIVLKEGANVQDTCVMHGFPGQDTVVEENGHVGHGAILHG 86 (193)
T ss_pred CCCCCCCCCCCCCCEEEEEEEEECCCCEECCCCCCCCCCCCEEEECCCCCCCCCEECCCCCCCEEEECCCCCCCCEEECC
T ss_conf 84656987734686378621788795246766313577572575348861464243672998867606882332123515
Q ss_pred EEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 24420100000232134454335566653110444320000244445444433222222111112221112344446503
Q gi|254780771|r 182 SLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHI 261 (347)
Q Consensus 182 ~iIG~~~~I~~~~vIG~~GFgf~~~~~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~v~i~hn~~i 261 (347)
T Consensus 87 C~vgrnaLvGMNAVV----------------------------------------------------------------- 101 (193)
T TIGR02287 87 CRVGRNALVGMNAVV----------------------------------------------------------------- 101 (193)
T ss_pred CEECCCCEECCCEEE-----------------------------------------------------------------
T ss_conf 463252311165066-----------------------------------------------------------------
Q ss_pred CCCEEEEEEEEEECCCEECCCCEEEECCEEECCEEECCCCEECCC-CEEEEEECCC
Q ss_conf 577188655565036365697297306878378598888898625-3260000798
Q gi|254780771|r 262 GCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASK-SGVLKDIPAG 316 (347)
Q Consensus 262 G~~~~~~~~~~~~g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~-s~v~~~v~~~ 316 (347)
T Consensus 102 ------------MDgAvige~sIVaA~aFVKAg~E~paq~Lv~GsPAkv~R~LseQ 145 (193)
T TIGR02287 102 ------------MDGAVIGERSIVAASAFVKAGAEIPAQVLVVGSPAKVVRELSEQ 145 (193)
T ss_pred ------------ECCCEECCCCCEEHHHHHHCCCCCCCCCEEECCCCEEEECCHHH
T ss_conf ------------16646677412002033434734784612662873055331146