HHsearch alignment for GI: 254780771 and conserved domain: cd00710
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.78 E-value=2e-19 Score=124.21 Aligned_cols=92 Identities=18% Similarity=0.267 Sum_probs=60.4
Q ss_pred CEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCEEEEEEEEEECCCEECCCCEEEECCEEECCEEE
Q ss_conf 0000244445444433222222111112221112344446-503577188655565036365697297306878378598
Q gi|254780771|r 219 VIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHN-VHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKI 297 (347)
Q Consensus 219 v~Ig~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~v~i~hn-~~iG~~~~~~~~~~~~g~~~ig~~~~ig~~~~i~~~v~i 297 (347)
T Consensus 65 ~~IG~~vtIgh~a~i-----------------------hG~c~Igd~~~IG~gaiv~~-a~Ig~~~vIgags~V-~g~~i 119 (167)
T cd00710 65 VWIGKNVSIAHGAIV-----------------------HGPAYIGDNCFIGFRSVVFN-AKVGDNCVIGHNAVV-DGVEI 119 (167)
T ss_pred EEECCCCEECCCCEE-----------------------CCEEEECCCCEECCCCEEEC-CEECCCCEECCCCEE-ECCCC
T ss_conf 497798289898488-----------------------12049839988988989982-597699899889888-47783
Q ss_pred CCCCEECCCCEEEEEECCCCEEEEECCHHHHHHHHHHHHH
Q ss_conf 8888986253260000798789982417588897867862
Q gi|254780771|r 298 GDNVQIASKSGVLKDIPAGQQYGGMPARPIGEYLRHMVML 337 (347)
Q Consensus 298 g~~~~i~a~s~v~~~v~~~~~~~G~pa~~~~~~~~~~~~~ 337 (347)
T Consensus 120 ~~g~~v~~G~~v~~~~pa~~~~~l--t~~~~~~~~~~~~~ 157 (167)
T cd00710 120 PPGRYVPAGAVITSQTQADALPDV--TDSAREFNEKVITV 157 (167)
T ss_pred CCCCEECCCCEEECCCCHHHCCCC--CHHHHHHHHHHHHH
T ss_conf 999895588288369966973379--99999999999999