HHsearch alignment for GI: 254780771 and conserved domain: cd03350

>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.91  E-value=4.3e-25  Score=154.90  Aligned_cols=118  Identities=24%  Similarity=0.380  Sum_probs=78.4

Q ss_pred             CCCCCCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEECC
Q ss_conf             33310015653233442000011001123203311221000000023321002332202331002442010000023213
Q gi|254780771|r  118 GISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIG  197 (347)
Q Consensus       118 ~I~~~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vIG  197 (347)
T Consensus         3 rI~P~A~I~~ga~IG~g~vI~~~a~I~~g~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~g~~i-----------------~   65 (139)
T cd03350           3 RVPPGAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVI-----------------G   65 (139)
T ss_pred             EECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEE-----------------C
T ss_conf             74998298899999999899889998439898987278666602686699993289888678-----------------4


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCC
Q ss_conf             44543355666531104443200002444454444332222221111122211123444465035771886555650363
Q gi|254780771|r  198 NDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGST  277 (347)
Q Consensus       198 ~~GFgf~~~~~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~v~i~hn~~iG~~~~~~~~~~~~g~~  277 (347)
T Consensus        66 g~-----------~~-p~------------------------------~---------------------------~~~v   76 (139)
T cd03350          66 GV-----------LE-PL------------------------------Q---------------------------ATPV   76 (139)
T ss_pred             CC-----------CC-CC------------------------------C---------------------------CCCC
T ss_conf             44-----------25-76------------------------------4---------------------------6886


Q ss_pred             EECCCCEEEECCEEECCEEECCCCEECCCCEEEEEECCCCEEEE
Q ss_conf             65697297306878378598888898625326000079878998
Q gi|254780771|r  278 YIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGG  321 (347)
Q Consensus       278 ~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~v~~~~~~~G  321 (347)
T Consensus        77 ~IeD~~~IGa~a~V~~Gv~IG~~avIGAGsVVtkdvp~y~~~~g  120 (139)
T cd03350          77 IIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQSTPIYDRETG  120 (139)
T ss_pred             EECCCEEEEECCEEECCCEECCCCEECCCCEEECCCCCEEEECC
T ss_conf             88799599309989468799999899979889189884682378