HHsearch alignment for GI: 254780771 and conserved domain: cd03350
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.91 E-value=4.3e-25 Score=154.90 Aligned_cols=118 Identities=24% Similarity=0.380 Sum_probs=78.4
Q ss_pred CCCCCCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEECC
Q ss_conf 33310015653233442000011001123203311221000000023321002332202331002442010000023213
Q gi|254780771|r 118 GISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIG 197 (347)
Q Consensus 118 ~I~~~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vIG 197 (347)
T Consensus 3 rI~P~A~I~~ga~IG~g~vI~~~a~I~~g~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~g~~i-----------------~ 65 (139)
T cd03350 3 RVPPGAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVI-----------------G 65 (139)
T ss_pred EECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEE-----------------C
T ss_conf 74998298899999999899889998439898987278666602686699993289888678-----------------4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCC
Q ss_conf 44543355666531104443200002444454444332222221111122211123444465035771886555650363
Q gi|254780771|r 198 NDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGST 277 (347)
Q Consensus 198 ~~GFgf~~~~~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~v~i~hn~~iG~~~~~~~~~~~~g~~ 277 (347)
T Consensus 66 g~-----------~~-p~------------------------------~---------------------------~~~v 76 (139)
T cd03350 66 GV-----------LE-PL------------------------------Q---------------------------ATPV 76 (139)
T ss_pred CC-----------CC-CC------------------------------C---------------------------CCCC
T ss_conf 44-----------25-76------------------------------4---------------------------6886
Q ss_pred EECCCCEEEECCEEECCEEECCCCEECCCCEEEEEECCCCEEEE
Q ss_conf 65697297306878378598888898625326000079878998
Q gi|254780771|r 278 YIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGG 321 (347)
Q Consensus 278 ~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~v~~~~~~~G 321 (347)
T Consensus 77 ~IeD~~~IGa~a~V~~Gv~IG~~avIGAGsVVtkdvp~y~~~~g 120 (139)
T cd03350 77 IIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQSTPIYDRETG 120 (139)
T ss_pred EECCCEEEEECCEEECCCEECCCCEECCCCEEECCCCCEEEECC
T ss_conf 88799599309989468799999899979889189884682378