HHsearch alignment for GI: 254780771 and conserved domain: cd03351
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.94 E-value=6.3e-27 Score=164.83 Aligned_cols=207 Identities=24% Similarity=0.282 Sum_probs=159.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEE-------EEEEEEE
Q ss_conf 765433310015653233442000011001123203311221000000023321002332202331-------0024420
Q gi|254780771|r 114 SFEGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSI-------YSSLIGN 186 (347)
Q Consensus 114 ~~~~~I~~~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I-------~~~iIG~ 186 (347)
T Consensus 3 HptAiI~~~A~IG~~v~Igp~~vIg~~V~IG~~~~I~~~v~I~~~t~IG~~~~I~~~avIG~~pqd~~~~g~~~~v~IG~ 82 (254)
T cd03351 3 HPTAIVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGD 82 (254)
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCEEECCCCCCCCCCCCCCCCCCCCEEEECC
T ss_conf 89779699899999799999989999999999999979968919979776525605753477876767379867699799
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 10000023213445433556665311044432000024444544443322222211111222111234444650357718
Q gi|254780771|r 187 SVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCI 266 (347)
Q Consensus 187 ~~~I~~~~vIG~~GFgf~~~~~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~v~i~hn~~iG~~~~ 266 (347)
T Consensus 83 ~~~Ire~vtI~rg-----t~~~-------~~~T~IG~~~~im~~~HIaH----dc~IG~~~iian~~~laGhv~Igd~a~ 146 (254)
T cd03351 83 NNTIREFVTIHRG-----TAQG-------GGVTRIGNNNLLMAYVHVAH----DCVIGNNVILANNATLAGHVEIGDYAI 146 (254)
T ss_pred CCEECCCCCCCCC-----CCCC-------CCCEEECCCCEEEECCCCCC----CCCCCCCEEEECCCCCCCCEEECCCCE
T ss_conf 7789953302367-----4378-------87559788857820254456----773379759933445568569899848
Q ss_pred EEEEEEEECCCEECCCCEEEECCEEECCEEECCCCEECCCCEEEEEEC-CCCEEEEECCHHHHHHHHHHHHHC
Q ss_conf 865556503636569729730687837859888889862532600007-987899824175888978678622
Q gi|254780771|r 267 IVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIP-AGQQYGGMPARPIGEYLRHMVMLS 338 (347)
Q Consensus 267 ~~~~~~~~g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~v~-~~~~~~G~pa~~~~~~~~~~~~~~ 338 (347)
T Consensus 147 IGg~~~v~q~v~IG~~a~Igags~V~kD--Vpp~~~v~G~PA~~~glN~vGl~R~g~~~~~i~~i~~ayr~l~ 217 (254)
T cd03351 147 IGGLSAVHQFCRIGRHAMVGGGSGVVQD--VPPYVIAAGNRARLRGLNLVGLKRRGFSREEIRALKRAYRILY 217 (254)
T ss_pred ECCCCEECCCCEECCCEEECCCCEEECC--CCCCCEECCCCCEEEEEEHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 9883677598199966199767456113--6987265179657872148988677999999999999999996