HHsearch alignment for GI: 254780771 and conserved domain: cd03352
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=100.00 E-value=0 Score=393.22 Aligned_cols=204 Identities=55% Similarity=0.897 Sum_probs=199.2
Q ss_pred CCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEE-EEEEEECCCCCEEEECCCCCCCCCCC
Q ss_conf 32334420000110011232033112210000000233210023322023310-02442010000023213445433556
Q gi|254780771|r 128 DVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIY-SSLIGNSVILHSGVRIGNDGFGYARG 206 (347)
Q Consensus 128 ~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~-~~iIG~~~~I~~~~vIG~~GFgf~~~ 206 (347)
T Consensus 1 ~a~ig~~v~I~~~avI~~~v~Ig~n~~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~~f~~~~~ 80 (205)
T cd03352 1 SAKIGENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPD 80 (205)
T ss_pred CCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEECCCEECCCCEECCEEEECCCEEECCCCCCCCCC
T ss_conf 96919999999987999999999999998988999996889883660034472786875447771534862135323147
Q ss_pred CCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEECCCCEEE
Q ss_conf 66531104443200002444454444332222221111122211123444465035771886555650363656972973
Q gi|254780771|r 207 VSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIG 286 (347)
Q Consensus 207 ~~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~v~i~hn~~iG~~~~~~~~~~~~g~~~ig~~~~ig 286 (347)
T Consensus 81 ~~~~~~~~~~g~v~Ig~~v~Ig~~~~I~~g~~~~T~IG~~~~i~~~v~igh~~~iG~~~~i~~~~~~~g~~~Igd~~~iG 160 (205)
T cd03352 81 GGGWVKIPQLGGVIIGDDVEIGANTTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIG 160 (205)
T ss_pred CCCCEECCCCCCEEECCCEEECCCCEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCEEECCCCCCCCCEEECCCCEEC
T ss_conf 98404514213189848849888627636642677478776864545255640415870750320002652497435398
Q ss_pred ECCEEECCEEECCCCEECCCCEEEEEECCCCEEEEECCHHHHHHH
Q ss_conf 068783785988888986253260000798789982417588897
Q gi|254780771|r 287 GQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPIGEYL 331 (347)
Q Consensus 287 ~~~~i~~~v~ig~~~~i~a~s~v~~~v~~~~~~~G~pa~~~~~~~ 331 (347)
T Consensus 161 ~~s~i~~gv~IG~~a~VgagSvVtkdVp~~~iv~G~PAr~ir~~~ 205 (205)
T cd03352 161 GQVGIAGHLTIGDGVVIGAGSGVTSIVPPGEYVSGTPAQPHREWL 205 (205)
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCCCCCEEEEEECCHHHHHC
T ss_conf 964882993999998998688796486999699976284356419