HHsearch alignment for GI: 254780771 and conserved domain: cd04646
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.85 E-value=1.9e-21 Score=135.07 Aligned_cols=63 Identities=16% Similarity=0.236 Sum_probs=53.3
Q ss_pred CCCCCCCCEEEEEEEEEECCCEECCCCEEEECCEEECCEEECCCCEECCCCEEEEEECCCCEE
Q ss_conf 465035771886555650363656972973068783785988888986253260000798789
Q gi|254780771|r 257 HNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQY 319 (347)
Q Consensus 257 hn~~iG~~~~~~~~~~~~g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~v~~~~~~ 319 (347)
T Consensus 82 h~~~IG~~~lIg~~a~V~~ga~Ig~~ciIgags~V~~~~~ip~~slv~G~pa~~~~~~~~~~~ 144 (164)
T cd04646 82 EALKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPENTVIYGADCLRRTQTDRPKP 144 (164)
T ss_pred ECCEECCCCEECCCCEECCCCEECCCCEECCCCCCCCCCEECCCEEEECCCEEEEECCCCCCC
T ss_conf 555976788896898999998999998999898928997929985997887478121567631