HHsearch alignment for GI: 254780771 and conserved domain: cd04649
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=98.70 E-value=2.5e-08 Score=64.03 Aligned_cols=60 Identities=22% Similarity=0.235 Sum_probs=29.2
Q ss_pred CCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEE-EEEEEECCCCCEEEEC
Q ss_conf 0000110011232033112210000000233210023322023310-0244201000002321
Q gi|254780771|r 135 VVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIY-SSLIGNSVILHSGVRI 196 (347)
Q Consensus 135 v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~-~~iIG~~~~I~~~~vI 196 (347)
T Consensus 2 vRi~~~~~VRlGAyl~~Gt~vM~egfVN~nAgt~g~~Mieg--rissgv~VG~~~diggGasi 62 (147)
T cd04649 2 VRIADADRVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEG--RISSGVIVGKGSDVGGGASI 62 (147)
T ss_pred EEECCCCEEEECCEECCCCEECCCCEEEECCCCCCCCEEEE--EEEECEEECCCCCCCCCCEE
T ss_conf 37447866873418879959862567987663066616876--78515698998332786178