HHsearch alignment for GI: 254780771 and conserved domain: cd04651
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=98.89 E-value=8.9e-10 Score=71.85 Aligned_cols=74 Identities=22% Similarity=0.247 Sum_probs=43.5
Q ss_pred EEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00110011232033112210000000233210023322023310024420100000232134454335566653110444
Q gi|254780771|r 137 IAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHI 216 (347)
Q Consensus 137 I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vIG~~GFgf~~~~~~~~~~~~~ 216 (347)
T Consensus 4 ~~~~~~v-~~S~Ig~Gc~I~~-~~V-~~SVIg~~~~Ig~~a~I~~svi~~~~~Ig~~~~l~------------------- 61 (104)
T cd04651 4 IGRRGEV-KNSLVSEGCIISG-GTV-ENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIR------------------- 61 (104)
T ss_pred ECCCCEE-EECEECCCCEEEC-CEE-ECCEECCCCEECCCCEEECCEEECCCEECCCCEEE-------------------
T ss_conf 8899489-8499889979959-999-80897299799999899600996556899999998-------------------
Q ss_pred CCCEECCCCCCCCCCCC
Q ss_conf 32000024444544443
Q gi|254780771|r 217 GRVIIQDKVEIGANSAI 233 (347)
Q Consensus 217 G~v~Ig~~v~IG~n~tI 233 (347)
T Consensus 62 -~~Ii~~~~~I~~g~~I 77 (104)
T cd04651 62 -RAIIDKNVVIPDGVVI 77 (104)
T ss_pred -EEEECCCCEECCCCEE
T ss_conf -6199999999989999