Query gi|254780771|ref|YP_003065184.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 347
No_of_seqs 234 out of 7213
Neff 7.0
Searched_HMMs 39220
Date Sun May 29 18:57:32 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780771.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01853 lipid_A_lpxD UDP-3-O 100.0 0 0 713.8 16.4 331 17-347 1-336 (336)
2 PRK00892 lpxD UDP-3-O-[3-hydro 100.0 0 0 676.7 21.8 327 11-345 1-329 (343)
3 COG1044 LpxD UDP-3-O-[3-hydrox 100.0 0 0 589.0 18.7 326 11-344 2-328 (338)
4 cd03352 LbH_LpxD UDP-3-O-acyl- 100.0 0 0 393.2 11.2 204 128-331 1-205 (205)
5 PRK12461 UDP-N-acetylglucosami 100.0 0 0 363.5 9.9 196 118-340 2-199 (256)
6 PRK05289 UDP-N-acetylglucosami 100.0 0 0 357.3 9.0 199 116-341 2-203 (261)
7 cd03351 LbH_UDP-GlcNAc_AT UDP- 100.0 0 0 345.2 8.6 195 118-341 1-200 (254)
8 TIGR01852 lipid_A_lpxA acyl-[a 100.0 0 0 344.7 4.0 197 119-342 1-201 (257)
9 TIGR01173 glmU UDP-N-acetylglu 100.0 0 0 301.1 7.3 265 40-329 169-453 (461)
10 COG1043 LpxA Acyl-[acyl carrie 100.0 0 0 298.7 5.9 197 116-339 3-202 (260)
11 cd03353 LbH_GlmU_C N-acetyl-gl 100.0 0 0 269.3 10.1 183 117-325 3-192 (193)
12 PRK09451 glmU bifunctional N-a 100.0 3.4E-44 0 258.4 8.1 258 52-329 173-447 (456)
13 COG1207 GlmU N-acetylglucosami 100.0 3.1E-43 0 253.3 6.9 271 41-331 167-452 (460)
14 TIGR01853 lipid_A_lpxD UDP-3-O 100.0 2.1E-33 5.4E-38 199.9 6.2 290 10-338 15-333 (336)
15 PRK00892 lpxD UDP-3-O-[3-hydro 100.0 1.5E-31 3.8E-36 189.9 6.5 162 115-295 115-296 (343)
16 TIGR03570 NeuD_NnaD sugar O-ac 100.0 3.5E-30 8.9E-35 182.5 9.7 119 112-324 83-201 (201)
17 COG1044 LpxD UDP-3-O-[3-hydrox 100.0 9.4E-31 2.4E-35 185.6 6.7 167 114-299 115-301 (338)
18 cd05636 LbH_G1P_TT_C_like Puta 100.0 2.6E-30 6.6E-35 183.2 8.3 160 115-310 4-163 (163)
19 TIGR03308 phn_thr-fam phosphon 100.0 6.2E-30 1.6E-34 181.2 6.6 160 130-331 4-163 (204)
20 cd04645 LbH_gamma_CA_like Gamm 100.0 1.7E-29 4.3E-34 178.8 7.2 66 277-342 78-146 (153)
21 cd04745 LbH_paaY_like paaY-lik 100.0 1.5E-29 3.9E-34 179.0 6.5 66 277-342 79-147 (155)
22 cd04650 LbH_FBP Ferripyochelin 100.0 2.4E-29 6E-34 178.0 6.8 66 277-342 79-147 (154)
23 cd03360 LbH_AT_putative Putati 100.0 4.3E-29 1.1E-33 176.6 7.8 117 113-323 81-197 (197)
24 TIGR03532 DapD_Ac 2,3,4,5-tetr 100.0 1.7E-28 4.5E-33 173.3 7.5 129 134-331 86-215 (231)
25 cd03352 LbH_LpxD UDP-3-O-acyl- 99.9 5.3E-28 1.4E-32 170.7 7.8 171 115-306 6-196 (205)
26 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.9 6.3E-27 1.6E-31 164.8 8.9 207 114-338 3-217 (254)
27 PRK05289 UDP-N-acetylglucosami 99.9 1.3E-26 3.4E-31 163.1 8.8 209 112-338 4-220 (261)
28 cd03358 LbH_WxcM_N_like WcxM-l 99.9 1.2E-26 3.1E-31 163.3 6.8 53 275-327 66-118 (119)
29 cd03353 LbH_GlmU_C N-acetyl-gl 99.9 5E-26 1.3E-30 160.0 8.4 48 257-306 143-190 (193)
30 PRK12461 UDP-N-acetylglucosami 99.9 8.3E-26 2.1E-30 158.8 9.5 207 113-338 3-217 (256)
31 PRK13627 carnitine operon prot 99.9 2.2E-26 5.6E-31 161.9 6.5 55 277-331 89-145 (196)
32 TIGR01852 lipid_A_lpxA acyl-[a 99.9 2.4E-25 6.2E-30 156.2 6.8 206 114-337 2-216 (257)
33 cd03350 LbH_THP_succinylT 2,3, 99.9 4.3E-25 1.1E-29 154.9 6.7 118 118-321 3-120 (139)
34 PRK10502 putative colanic acid 99.9 6.7E-25 1.7E-29 153.8 6.9 56 274-329 123-178 (179)
35 cd04647 LbH_MAT_like Maltose O 99.9 9E-25 2.3E-29 153.2 6.2 107 219-327 2-109 (109)
36 cd04646 LbH_Dynactin_6 Dynacti 99.9 6E-25 1.5E-29 154.1 5.2 56 277-332 84-141 (164)
37 cd03349 LbH_XAT Xenobiotic acy 99.9 1.9E-24 4.8E-29 151.4 5.4 56 275-330 72-127 (145)
38 PRK09677 putative lipopolysacc 99.9 3.1E-24 7.8E-29 150.3 6.1 58 274-331 128-185 (192)
39 TIGR01173 glmU UDP-N-acetylglu 99.9 5.5E-24 1.4E-28 148.9 6.0 164 116-307 277-447 (461)
40 cd03357 LbH_MAT_GAT Maltose O- 99.9 4.6E-24 1.2E-28 149.3 5.6 53 275-327 117-169 (169)
41 cd03359 LbH_Dynactin_5 Dynacti 99.9 6.4E-24 1.6E-28 148.5 6.2 54 277-330 90-145 (161)
42 PRK09451 glmU bifunctional N-a 99.9 2E-23 5.2E-28 145.8 8.3 142 141-308 260-408 (456)
43 PRK09527 lacA galactoside O-ac 99.9 1.1E-23 2.8E-28 147.2 4.8 55 276-330 131-185 (203)
44 cd05825 LbH_wcaF_like wcaF-lik 99.9 3.3E-23 8.5E-28 144.6 7.0 55 273-327 53-107 (107)
45 cd03354 LbH_SAT Serine acetylt 99.9 5.4E-23 1.4E-27 143.5 6.7 100 218-323 2-101 (101)
46 PRK10092 maltose O-acetyltrans 99.9 6.4E-23 1.6E-27 143.1 6.5 56 274-329 127-182 (183)
47 COG1043 LpxA Acyl-[acyl carrie 99.9 9.5E-22 2.4E-26 136.8 8.6 211 112-340 5-223 (260)
48 COG0663 PaaY Carbonic anhydras 99.9 1E-21 2.7E-26 136.5 6.8 53 277-329 90-144 (176)
49 cd04646 LbH_Dynactin_6 Dynacti 99.8 1.9E-21 5E-26 135.1 7.1 63 257-319 82-144 (164)
50 cd05636 LbH_G1P_TT_C_like Puta 99.8 1.4E-21 3.5E-26 135.9 5.8 82 119-201 26-107 (163)
51 cd00710 LbH_gamma_CA Gamma car 99.8 5E-21 1.3E-25 132.9 8.4 55 274-329 80-142 (167)
52 TIGR01172 cysE serine O-acetyl 99.8 3.5E-21 8.9E-26 133.7 4.9 50 276-325 114-163 (163)
53 cd03350 LbH_THP_succinylT 2,3, 99.8 8.3E-21 2.1E-25 131.7 5.9 129 114-319 5-133 (139)
54 cd04645 LbH_gamma_CA_like Gamm 99.8 3.6E-20 9.2E-25 128.2 8.2 62 257-318 76-138 (153)
55 PRK10191 putative colanic acid 99.8 2E-19 5.1E-24 124.2 6.8 51 276-326 92-142 (146)
56 cd00710 LbH_gamma_CA Gamma car 99.8 2E-19 5E-24 124.2 5.8 92 219-337 65-157 (167)
57 cd04650 LbH_FBP Ferripyochelin 99.8 3.3E-19 8.5E-24 123.0 5.8 61 257-317 77-138 (154)
58 cd04745 LbH_paaY_like paaY-lik 99.8 6.1E-19 1.6E-23 121.5 7.0 61 257-317 77-138 (155)
59 COG0110 WbbJ Acetyltransferase 99.8 5.7E-19 1.4E-23 121.7 4.8 56 274-329 122-177 (190)
60 KOG4750 consensus 99.8 7.7E-19 2E-23 121.0 5.0 81 246-330 174-254 (269)
61 COG1207 GlmU N-acetylglucosami 99.7 1.7E-18 4.3E-23 119.1 6.3 150 119-294 277-433 (460)
62 TIGR03308 phn_thr-fam phosphon 99.7 3.3E-18 8.3E-23 117.6 6.7 153 114-311 6-160 (204)
63 COG1045 CysE Serine acetyltran 99.7 2.4E-18 6.1E-23 118.3 5.1 54 276-329 119-172 (194)
64 cd03359 LbH_Dynactin_5 Dynacti 99.7 1.3E-17 3.3E-22 114.3 7.9 124 164-317 21-149 (161)
65 PRK13627 carnitine operon prot 99.7 3.7E-18 9.6E-23 117.3 4.5 97 184-318 52-149 (196)
66 PRK11132 cysE serine acetyltra 99.7 7.3E-18 1.9E-22 115.7 4.8 54 276-329 193-246 (273)
67 TIGR02287 PaaY phenylacetic ac 99.7 2E-17 5.2E-22 113.3 6.1 102 218-339 47-151 (193)
68 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.7 1.4E-17 3.5E-22 114.2 3.9 95 113-235 83-177 (231)
69 COG0663 PaaY Carbonic anhydras 99.6 3.5E-16 9E-21 106.6 6.9 155 115-339 10-165 (176)
70 pfam04613 LpxD UDP-3-O-[3-hydr 99.6 3.1E-16 7.9E-21 106.9 6.0 72 32-103 1-72 (72)
71 cd03358 LbH_WxcM_N_like WcxM-l 99.6 7.6E-16 1.9E-20 104.8 5.5 83 131-234 1-83 (119)
72 PRK05293 glgC glucose-1-phosph 99.6 2.1E-15 5.4E-20 102.4 4.4 96 131-247 273-372 (381)
73 COG2171 DapD Tetrahydrodipicol 99.6 5.8E-15 1.5E-19 100.0 6.1 122 131-321 105-227 (271)
74 KOG1461 consensus 99.6 3.3E-15 8.4E-20 101.3 4.8 84 130-234 317-400 (673)
75 PRK11830 dapD 2,3,4,5-tetrahyd 99.5 2E-14 5.1E-19 97.0 6.7 118 132-283 94-212 (265)
76 COG1208 GCD1 Nucleoside-diphos 99.5 2.3E-14 5.7E-19 96.8 6.8 105 137-309 253-357 (358)
77 cd03360 LbH_AT_putative Putati 99.5 1.5E-14 3.9E-19 97.7 2.3 102 110-235 84-185 (197)
78 KOG1461 consensus 99.5 6.1E-14 1.6E-18 94.4 4.9 71 145-235 314-384 (673)
79 TIGR03570 NeuD_NnaD sugar O-ac 99.5 2.6E-13 6.5E-18 91.1 7.6 102 110-235 87-188 (201)
80 cd00208 LbetaH Left-handed par 99.4 1.2E-13 3.1E-18 92.8 5.7 35 276-310 44-78 (78)
81 cd05824 LbH_M1P_guanylylT_C Ma 99.4 5.6E-14 1.4E-18 94.6 2.5 65 125-196 2-66 (80)
82 PRK05293 glgC glucose-1-phosph 99.4 2.6E-13 6.6E-18 91.0 3.5 35 278-313 344-378 (381)
83 cd05824 LbH_M1P_guanylylT_C Ma 99.4 2.1E-13 5.4E-18 91.5 2.8 71 119-190 2-78 (80)
84 PRK11830 dapD 2,3,4,5-tetrahyd 99.4 9.7E-13 2.5E-17 87.9 5.4 81 242-322 127-231 (265)
85 PRK00844 glgC glucose-1-phosph 99.3 7.8E-13 2E-17 88.4 4.0 65 134-199 315-383 (409)
86 PRK10502 putative colanic acid 99.3 2E-12 5.2E-17 86.2 5.3 52 128-179 52-107 (179)
87 cd05787 LbH_eIF2B_epsilon eIF- 99.3 8.1E-13 2.1E-17 88.3 2.4 47 149-196 2-48 (79)
88 PRK09677 putative lipopolysacc 99.3 3.6E-12 9.2E-17 84.8 5.7 125 129-312 44-183 (192)
89 TIGR02353 NRPS_term_dom non-ri 99.3 1.3E-12 3.4E-17 87.2 3.4 84 241-324 622-719 (719)
90 cd03357 LbH_MAT_GAT Maltose O- 99.3 3.7E-12 9.3E-17 84.8 5.2 87 131-236 45-136 (169)
91 PRK03282 consensus 99.3 3.9E-12 1E-16 84.6 4.3 50 147-197 330-379 (406)
92 TIGR02287 PaaY phenylacetic ac 99.3 5.7E-12 1.4E-16 83.8 4.8 125 115-316 7-145 (193)
93 cd05787 LbH_eIF2B_epsilon eIF- 99.3 2.1E-12 5.5E-17 86.0 2.5 64 131-196 2-65 (79)
94 COG2171 DapD Tetrahydrodipicol 99.2 5.6E-12 1.4E-16 83.8 4.4 65 117-181 109-173 (271)
95 cd05635 LbH_unknown Uncharacte 99.2 3.8E-12 9.8E-17 84.7 3.3 82 129-232 12-93 (101)
96 cd00208 LbetaH Left-handed par 99.2 2E-12 5.1E-17 86.2 1.8 17 218-234 44-60 (78)
97 TIGR02353 NRPS_term_dom non-ri 99.2 1.3E-11 3.3E-16 81.8 5.2 105 218-329 370-479 (719)
98 COG1208 GCD1 Nucleoside-diphos 99.2 5E-12 1.3E-16 84.0 2.9 87 123-236 256-342 (358)
99 cd03354 LbH_SAT Serine acetylt 99.2 4.3E-12 1.1E-16 84.4 2.5 16 218-233 54-69 (101)
100 PRK04928 consensus 99.2 7.8E-12 2E-16 83.0 3.5 66 146-233 311-376 (405)
101 COG1045 CysE Serine acetyltran 99.2 5.3E-12 1.4E-16 83.9 2.1 18 216-233 135-152 (194)
102 PRK10191 putative colanic acid 99.2 6.5E-12 1.7E-16 83.4 2.5 83 125-234 44-126 (146)
103 PRK02862 glgC glucose-1-phosph 99.2 8.1E-11 2.1E-15 77.5 8.0 42 146-189 308-349 (429)
104 cd04647 LbH_MAT_like Maltose O 99.2 2E-11 5E-16 80.8 4.8 69 147-234 2-74 (109)
105 PRK11132 cysE serine acetyltra 99.2 3E-12 7.6E-17 85.3 0.0 67 98-168 115-183 (273)
106 cd03356 LbH_G1P_AT_C_like Left 99.2 1E-11 2.7E-16 82.3 2.5 47 149-196 2-48 (79)
107 cd03349 LbH_XAT Xenobiotic acy 99.1 4.5E-11 1.1E-15 78.9 4.9 115 146-306 1-119 (145)
108 cd04651 LbH_G1P_AT_C Glucose-1 99.1 2.3E-11 5.8E-16 80.5 3.2 77 119-199 4-80 (104)
109 PRK09527 lacA galactoside O-ac 99.1 2E-11 5.1E-16 80.8 2.9 125 131-315 58-187 (203)
110 cd04652 LbH_eIF2B_gamma_C eIF- 99.1 1.8E-11 4.5E-16 81.1 2.5 47 149-196 2-48 (81)
111 cd04652 LbH_eIF2B_gamma_C eIF- 99.1 2.6E-11 6.5E-16 80.2 2.8 64 131-196 2-65 (81)
112 TIGR01172 cysE serine O-acetyl 99.1 2.4E-11 6.1E-16 80.4 1.9 85 125-234 64-148 (163)
113 cd03356 LbH_G1P_AT_C_like Left 99.1 7.4E-11 1.9E-15 77.7 3.1 62 132-195 3-64 (79)
114 PRK10092 maltose O-acetyltrans 99.1 3E-10 7.7E-15 74.4 5.9 38 143-180 70-109 (183)
115 KOG1460 consensus 99.0 6.7E-10 1.7E-14 72.5 6.8 64 132-196 292-355 (407)
116 PRK00844 glgC glucose-1-phosph 99.0 2E-10 5.2E-15 75.3 3.9 66 146-233 315-380 (409)
117 PRK04928 consensus 99.0 1.7E-10 4.3E-15 75.8 3.5 51 147-198 328-378 (405)
118 PRK03282 consensus 99.0 2.1E-10 5.3E-15 75.3 3.7 65 147-233 314-378 (406)
119 PRK03701 consensus 99.0 1.1E-10 2.8E-15 76.8 2.0 51 146-197 347-397 (431)
120 KOG1322 consensus 99.0 8E-10 2E-14 72.1 5.7 76 5-81 114-198 (371)
121 PRK01884 consensus 99.0 2.8E-10 7.2E-15 74.5 3.3 65 134-199 329-397 (435)
122 PRK00725 glgC glucose-1-phosph 99.0 2.4E-10 6.1E-15 75.0 2.5 51 146-197 347-397 (431)
123 KOG1462 consensus 98.9 6.6E-10 1.7E-14 72.5 3.4 17 37-54 166-182 (433)
124 PRK02862 glgC glucose-1-phosph 98.9 8.6E-10 2.2E-14 71.9 3.3 32 164-196 308-339 (429)
125 cd04651 LbH_G1P_AT_C Glucose-1 98.9 8.9E-10 2.3E-14 71.9 3.1 74 137-233 4-77 (104)
126 TIGR00965 dapD 2,3,4,5-tetrahy 98.9 3.7E-09 9.5E-14 68.5 5.7 199 87-341 74-272 (275)
127 cd05825 LbH_wcaF_like wcaF-lik 98.9 4.5E-09 1.1E-13 68.1 6.1 18 217-234 55-72 (107)
128 cd05635 LbH_unknown Uncharacte 98.9 1.1E-09 2.9E-14 71.3 2.9 46 146-191 11-57 (101)
129 PRK01884 consensus 98.8 2.5E-09 6.3E-14 69.4 3.7 66 146-233 329-394 (435)
130 KOG3121 consensus 98.7 3.6E-09 9.1E-14 68.6 2.2 120 146-328 33-155 (184)
131 PRK03701 consensus 98.7 1.1E-08 2.7E-13 66.0 3.5 66 146-233 331-396 (431)
132 cd04649 LbH_THP_succinylT_puta 98.7 2.5E-08 6.3E-13 64.0 5.2 60 135-196 2-62 (147)
133 KOG1462 consensus 98.7 9.1E-09 2.3E-13 66.4 2.7 13 221-233 337-349 (433)
134 cd04649 LbH_THP_succinylT_puta 98.7 9E-09 2.3E-13 66.4 2.6 34 277-312 74-107 (147)
135 TIGR00965 dapD 2,3,4,5-tetrahy 98.7 3.1E-08 7.8E-13 63.5 5.2 71 242-312 134-212 (275)
136 TIGR01208 rmlA_long glucose-1- 98.6 2.2E-08 5.5E-13 64.3 3.5 70 119-190 251-321 (361)
137 KOG1322 consensus 98.6 1.3E-08 3.2E-13 65.6 1.3 13 51-63 186-198 (371)
138 PRK00725 glgC glucose-1-phosph 98.6 2.5E-08 6.4E-13 64.0 2.4 66 146-233 331-396 (431)
139 KOG4750 consensus 98.6 2.5E-08 6.2E-13 64.0 2.4 33 260-292 202-234 (269)
140 COG0110 WbbJ Acetyltransferase 98.6 1.4E-07 3.5E-12 60.0 6.0 32 277-310 143-175 (190)
141 COG0448 GlgC ADP-glucose pyrop 98.5 2.1E-07 5.4E-12 59.0 4.7 13 52-64 197-209 (393)
142 TIGR02091 glgC glucose-1-phosp 98.4 2.2E-07 5.6E-12 58.9 3.6 40 146-187 336-375 (421)
143 KOG1460 consensus 98.4 5.8E-07 1.5E-11 56.6 5.4 56 129-196 283-338 (407)
144 TIGR02091 glgC glucose-1-phosp 98.4 1.7E-07 4.3E-12 59.5 2.6 20 177-196 348-367 (421)
145 COG0448 GlgC ADP-glucose pyrop 98.4 5E-07 1.3E-11 56.9 4.4 11 67-77 194-204 (393)
146 PRK10773 murF UDP-N-acetylmura 98.3 2.1E-06 5.3E-11 53.6 5.9 87 12-106 3-97 (452)
147 TIGR01208 rmlA_long glucose-1- 98.2 7E-07 1.8E-11 56.2 2.9 69 113-183 251-320 (361)
148 KOG4042 consensus 98.2 8E-06 2E-10 50.4 6.9 45 278-322 97-143 (190)
149 KOG3121 consensus 98.0 2.2E-06 5.5E-11 53.5 2.3 16 182-197 85-100 (184)
150 TIGR02092 glgD glucose-1-phosp 97.9 5.7E-06 1.5E-10 51.2 2.9 78 146-247 303-381 (383)
151 KOG4042 consensus 97.9 3.5E-06 9E-11 52.3 1.8 55 260-314 97-151 (190)
152 TIGR03536 DapD_gpp 2,3,4,5-tet 97.7 7.7E-05 2E-09 45.1 5.9 16 218-233 224-239 (341)
153 COG4801 Predicted acyltransfer 97.7 0.00018 4.7E-09 43.0 6.7 29 277-305 207-235 (277)
154 TIGR03535 DapD_actino 2,3,4,5- 97.6 9.6E-05 2.4E-09 44.6 4.8 16 218-233 199-214 (319)
155 TIGR03536 DapD_gpp 2,3,4,5-tet 97.6 4.7E-05 1.2E-09 46.2 2.8 33 277-311 251-283 (341)
156 TIGR03535 DapD_actino 2,3,4,5- 97.3 0.00015 3.9E-09 43.5 2.6 32 277-310 226-257 (319)
157 TIGR02092 glgD glucose-1-phosp 97.1 0.00027 6.8E-09 42.2 2.2 62 134-196 303-367 (383)
158 COG4801 Predicted acyltransfer 97.1 0.0014 3.5E-08 38.3 5.6 43 151-193 55-104 (277)
159 PRK00139 murE UDP-N-acetylmura 96.6 0.0034 8.6E-08 36.2 4.4 87 12-107 2-96 (481)
160 PRK11930 putative bifunctional 96.3 0.0084 2.1E-07 34.0 5.2 94 12-105 2-106 (824)
161 PRK11929 putative bifunctional 95.3 0.022 5.6E-07 31.8 3.7 70 36-106 29-106 (953)
162 pfam07959 Fucokinase L-fucokin 91.0 0.52 1.3E-05 24.3 5.0 18 253-270 302-319 (414)
163 pfam01225 Mur_ligase Mur ligas 89.9 0.45 1.2E-05 24.7 3.8 61 43-104 10-76 (76)
164 TIGR01085 murE UDP-N-acetylmur 84.5 1.5 3.9E-05 21.8 4.0 83 34-118 2-95 (494)
165 TIGR01143 murF UDP-N-acetylmur 63.0 6.2 0.00016 18.5 2.5 62 43-105 4-78 (462)
166 COG0770 MurF UDP-N-acetylmuram 56.3 14 0.00035 16.6 3.4 91 12-105 2-99 (451)
167 COG1510 Predicted transcriptio 37.8 21 0.00054 15.6 1.8 21 6-26 35-55 (177)
168 KOG1344 consensus 33.5 11 0.00029 17.0 -0.1 45 39-83 60-104 (324)
169 pfam02395 Peptidase_S6 Immunog 27.2 43 0.0011 13.9 6.0 63 260-322 374-443 (759)
170 pfam04552 Sigma54_DBD Sigma-54 26.3 31 0.00079 14.7 1.1 21 4-24 37-61 (160)
171 TIGR02874 spore_ytfJ sporulati 23.6 40 0.001 14.1 1.3 30 181-210 22-54 (132)
172 PRK00286 xseA exodeoxyribonucl 23.1 38 0.00097 14.2 1.1 44 8-52 1-45 (443)
173 TIGR02395 rpoN_sigma RNA polym 21.2 50 0.0013 13.6 1.4 14 10-23 363-376 (477)
No 1
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; InterPro: IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (2.3.1 from EC) catalyses an early step in lipid A biosynthesis : UDP-3-O-(3-hydroxytetradecanoyl)glucosamine + (R)-3-hydroxytetradecanoyl- [acyl carrier protein] = UDP-2,3-bis(3-hydroxytetradecanoyl)glucosamine + [acyl carrier protein] Members of this family also contain a hexapeptide repeat (IPR001451 from INTERPRO). This entry represents the non-repeating region of LPXD proteins.; GO: 0016747 transferase activity transferring groups other than amino-acyl groups, 0009245 lipid A biosynthetic process.
Probab=100.00 E-value=0 Score=713.84 Aligned_cols=331 Identities=45% Similarity=0.748 Sum_probs=314.9
Q ss_pred HHHHHHCCEEECCCCCCEEECCCCCHHHCCCCCEEEECCHHHHHHHHHCCCEEEEECHHHHHC-CCCCCCCEECCCCCHH
Q ss_conf 999984669955776633871567988889986999618676777754585699988776101-4445531001232011
Q gi|254780771|r 17 KLAQSIGASLLDENFGERMIYSLSPIARASTGDISYIISRKFLNNIEKCKASAIICSQDIVPF-IPKNIPCLLSDKPEVS 95 (347)
Q Consensus 17 eIa~~l~~~l~g~~~~d~~I~~I~~l~~A~~~~IsFi~~~kyl~~l~~s~A~aiI~~~d~~~~-~~~~~~~Iiv~nP~~a 95 (347)
|||++|+++|.++..+|.+|++++||++|++++|||+.|+||++.|++|+|+|++++++.... .++.+.+|++++||++
T Consensus 1 ela~~~~~El~g~a~g~~~i~~v~~l~~A~~~~itF~~n~K~~~~l~~~~AgAv~~~~~~~~~~~~~~~~~L~v~~P~l~ 80 (336)
T TIGR01853 1 ELAERLGAELKGDAEGDIKISGVAPLEKAKAEHITFLANPKYLKELKSSKAGAVIVSADDQSKLVPKKCAALVVKDPYLA 80 (336)
T ss_pred CCHHHCCCEEECCCCCCEEEEEECCCCCCCCCCEEEECCHHHHHHHHCCCCEEEEEEHHHCCCCCCCCCCEEEECCCHHH
T ss_conf 90442085023566676688530763358802266533804787651577407997156617855232505781781799
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCE
Q ss_conf 22101211122211235576543331001565323344200001100112320331122100000002332100233220
Q gi|254780771|r 96 FAIAGSILYPQAMHMEASSFEGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGA 175 (347)
Q Consensus 96 fA~i~~~l~~~~~~~~~~~~~~~I~~~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~ 175 (347)
||+++++|++.....-......+|||+|.++++++|+++|.|+||++||++|.||+||.|+|+|+|++||+||++|+|+|
T Consensus 81 fA~~~~~F~~~~~~~lvaR~~~gi~p~a~~~~~a~~~~~v~I~pnvvIG~~v~IG~~~~I~pg~~iG~~v~IG~~~~i~~ 160 (336)
T TIGR01853 81 FAKVAELFDPPPKRLLVARMEAGIHPTAVVEPSAKIGEGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSVIYP 160 (336)
T ss_pred HHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEECCEEEECCCCEECCCCEECCCCEECCCCEECCCCEEEC
T ss_conf 99999860887650121101035676873056531078436875417888868778636357768768868799677806
Q ss_pred EEEEEE-EEEEECCCCCEEEECCCCCCCCCCCC-CCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 233100-24420100000232134454335566-6531104443200002444454444332222221111122211123
Q gi|254780771|r 176 GSSIYS-SLIGNSVILHSGVRIGNDGFGYARGV-SDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQV 253 (347)
Q Consensus 176 ~~~I~~-~iIG~~~~I~~~~vIG~~GFgf~~~~-~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~v 253 (347)
||+|++ +.||+||.||+|||||+|||||++.+ +.|+|+||+|+|+|||+||||||||||||+|+||+|++||||||||
T Consensus 161 ~v~i~~~~~lG~nV~I~~GaVIG~DGFGya~~~~g~~~KI~q~G~ViI~D~VEIGANTtIDRg~~~dT~i~~gtKIDNLV 240 (336)
T TIGR01853 161 NVVIYERVQLGKNVIIHAGAVIGSDGFGYAHTANGGHVKIPQIGRVIIEDDVEIGANTTIDRGAFDDTVIGEGTKIDNLV 240 (336)
T ss_pred CCEEEECCEECCEEEECCCCEECCCCCCEEECCCCCEEEEEEECEEEEECEEEECCCCHHHCCCCCCCEEECCCEECCEE
T ss_conf 70897241564715876887886787320357889715441302489602338746870211021471872384662315
Q ss_pred CCCCCCCCCCCEEEEEEEEEECCCEECCCCEEEECCEEECCEEECCCCEECCCCEEEEEECCCCEEEE--ECCHHHHHHH
Q ss_conf 44446503577188655565036365697297306878378598888898625326000079878998--2417588897
Q gi|254780771|r 254 QIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGG--MPARPIGEYL 331 (347)
Q Consensus 254 ~i~hn~~iG~~~~~~~~~~~~g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~v~~~~~~~G--~pa~~~~~~~ 331 (347)
||||||+||+||+|++|+||||||+||+||+||||+++.+|++|||+++|+|.|.|++|||+++.|+| .||+|+++|+
T Consensus 241 QIAHNc~IG~n~~ivaqvGiaGSt~iG~~V~~GGqvGv~GHl~IgD~v~i~A~sgV~~~~~~~~~ygggi~Pa~~~~~w~ 320 (336)
T TIGR01853 241 QIAHNCRIGENCIIVAQVGIAGSTKIGRNVILGGQVGVAGHLEIGDNVTIGAKSGVTKSVPPNGRYGGGIIPAMPQKEWL 320 (336)
T ss_pred EEEEEEEECCCCEEEEEEECCEEEEECCEEEECCEEEEECEEEECCCCEEEEECCCCCCCCCCCCCCEEECCCCHHHHHH
T ss_conf 74133462664278964201134675580696260265110894383488451220677798860100111412024789
Q ss_pred HHHHHHCCHHHHHHCC
Q ss_conf 8678622826764179
Q gi|254780771|r 332 RHMVMLSKPSKYKIKR 347 (347)
Q Consensus 332 ~~~~~~~~l~~~~~~~ 347 (347)
|+++.+++|++++.|.
T Consensus 321 k~~a~~~~l~~~~~r~ 336 (336)
T TIGR01853 321 KIAAKLKRLPELRKRV 336 (336)
T ss_pred HHHHHHHHCHHHHCCC
T ss_conf 9999987142553179
No 2
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=100.00 E-value=0 Score=676.73 Aligned_cols=327 Identities=44% Similarity=0.725 Sum_probs=315.2
Q ss_pred CCCCHHHHHHHHCCEEECCCCCCEEECCCCCHHHCCCCCEEEECCHHHHHHHHHCCCEEEEECHHHHHCCCCCCCCEECC
Q ss_conf 88039999998466995577663387156798888998699961867677775458569998877610144455310012
Q gi|254780771|r 11 KGIALMKLAQSIGASLLDENFGERMIYSLSPIARASTGDISYIISRKFLNNIEKCKASAIICSQDIVPFIPKNIPCLLSD 90 (347)
Q Consensus 11 ~~~sl~eIa~~l~~~l~g~~~~d~~I~~I~~l~~A~~~~IsFi~~~kyl~~l~~s~A~aiI~~~d~~~~~~~~~~~Iiv~ 90 (347)
++|||+|||+.|++++.|+ ++.+|+++++|++|++++|||+.++||++.|++|+|+++|+++++...+|++...|+++
T Consensus 1 ~s~tL~eIA~~lgg~l~Gd--~d~~I~gva~l~~A~~~~IsF~~~~ky~~~L~~tkAsavIv~~~~~~~~~~~~~~Iiv~ 78 (343)
T PRK00892 1 PSLTLAELAEQLGAELHGD--GDIEITGLAPLDEAGPGQLSFLDNPKYRKQLKDTQAGAVIVSPDDAEKVPAHRAALVVK 78 (343)
T ss_pred CCCCHHHHHHHHCCEEECC--CCCEEECCCCHHHCCCCCEEEEECHHHHHHHHCCCCEEEEECHHHHHHCCCCCCEEEEC
T ss_conf 9631999999759999779--98279645496668998099995888888875578749995478885575887389989
Q ss_pred CCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCC
Q ss_conf 32011221012111222112355765433310015653233442000011001123203311221000000023321002
Q gi|254780771|r 91 KPEVSFAIAGSILYPQAMHMEASSFEGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRN 170 (347)
Q Consensus 91 nP~~afA~i~~~l~~~~~~~~~~~~~~~I~~~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~ 170 (347)
|||++||+++++|++.. ...+.|||+|+|+++++|++++.|+|+++|+++|+||+||+|+++|+|+++|+||++
T Consensus 79 nP~~afaki~~lF~~~~------~~~~gIh~sA~I~~~a~Ig~~v~Igp~~vIg~~v~IG~~~~I~~~~~Ig~~v~IG~~ 152 (343)
T PRK00892 79 NPYLAFARVAQLFDTPP------APAPGIHPSAVIDPTAKIGKSVSIGPNAVIGAGVEIGDGVIIGAGAVIGAGVKIGDD 152 (343)
T ss_pred CHHHHHHHHHHHHCCCC------CCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCC
T ss_conf 98999999999746764------456887975361887787999889999899999899999999298199588188899
Q ss_pred CCCCEEEEEEE-EEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 33220233100-24420100000232134454335566653110444320000244445444433222222111112221
Q gi|254780771|r 171 CSIGAGSSIYS-SLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKI 249 (347)
Q Consensus 171 ~~I~~~~~I~~-~iIG~~~~I~~~~vIG~~GFgf~~~~~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~~t~Ig~~~~i 249 (347)
|.|++||+|++ +.||++|+|++|++||+|||||++.++.|.|+||+|+|+|||+||||+|||||||++++|+||++|||
T Consensus 153 ~~I~~nv~I~~~~~IG~~~~I~~g~vIG~dGFGf~~~~~~~~kip~~G~V~I~d~veIgan~tIdrg~~~~T~Ig~~~ki 232 (343)
T PRK00892 153 CRLHANVTIYHRVQIGNRVLIHSGAVIGQDGFGFAPDRGGWVKIPQLGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKI 232 (343)
T ss_pred CEEECCCEECCCEEECCCCEECCCCEECCCCCCCCCCCCCEEECCCCCEEEECCCCEECCCCEECCCCCCCCEECCCCEE
T ss_conf 58811856625558888756468862236675413679940464643249988986888873272366779788989659
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEEEECCCEECCCCEEEECCEEECCEEECCCCEECCCCEEEEEECC-CCEEEEECCHHHH
Q ss_conf 112344446503577188655565036365697297306878378598888898625326000079-8789982417588
Q gi|254780771|r 250 DNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPA-GQQYGGMPARPIG 328 (347)
Q Consensus 250 d~~v~i~hn~~iG~~~~~~~~~~~~g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~v~~-~~~~~G~pa~~~~ 328 (347)
||||||||||.||++|+|++|++++||++|||+|+||||+++++|++||++++++|+|.|++|+|+ ++.|+|+||+|++
T Consensus 233 dn~vhIaHn~~IG~~~iia~~~giaGs~~igd~v~igG~~gi~~h~~Ig~~~~i~~~sgv~~di~~~g~~~~G~Pa~~~~ 312 (343)
T PRK00892 233 DNLVQIAHNVRIGRHCAIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEIGDGVQITAMSGVMKSITEPGEYSSGIPAQPNK 312 (343)
T ss_pred EEEEEECCCCEECCCCEEEECCEEEEEEEECCCEEECCCCCCCCCCEECCCCEEEECCEECCCCCCCCEEEEEECCCHHH
T ss_conf 21117616747878838852114700579999149944132348869899979900651436469998089753460089
Q ss_pred HHHHHHHHHCCHHHHHH
Q ss_conf 89786786228267641
Q gi|254780771|r 329 EYLRHMVMLSKPSKYKI 345 (347)
Q Consensus 329 ~~~~~~~~~~~l~~~~~ 345 (347)
+|+|+++.||||+++..
T Consensus 313 ~~~r~~a~~~~Lp~l~k 329 (343)
T PRK00892 313 EWRKTAALVRRLDKMRK 329 (343)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999988860799999
No 3
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=100.00 E-value=0 Score=589.03 Aligned_cols=326 Identities=44% Similarity=0.739 Sum_probs=314.2
Q ss_pred CCCCHHHHHHHHCCEEECCCCCCEEECCCCCHHHCCCCCEEEECCHHHHHHHHHCCCEEEEECHHHHHCCCCCCCCEECC
Q ss_conf 88039999998466995577663387156798888998699961867677775458569998877610144455310012
Q gi|254780771|r 11 KGIALMKLAQSIGASLLDENFGERMIYSLSPIARASTGDISYIISRKFLNNIEKCKASAIICSQDIVPFIPKNIPCLLSD 90 (347)
Q Consensus 11 ~~~sl~eIa~~l~~~l~g~~~~d~~I~~I~~l~~A~~~~IsFi~~~kyl~~l~~s~A~aiI~~~d~~~~~~~~~~~Iiv~ 90 (347)
+.++|+|||+.+++++.++. +..+++++++++|++++|+|++++||.+.+..++|++++++++.....+...+.|+++
T Consensus 2 ~~~~l~~la~~~~~e~~g~~--~~~i~~va~l~~a~~~~i~f~~~~ky~~~l~~s~Agaviv~~~~~~~~~~~~~~Lv~~ 79 (338)
T COG1044 2 PSYTLAELAQQLGAELRGDG--DRVITGVAPLDEAQPGDISFLANPKYRKELKTSRAGAVIVSAKDAAFAPAKKNALVVK 79 (338)
T ss_pred CCCHHHHHHHHHCCEEECCC--CEEEECCCHHHHCCCCCCEEECCHHHHHHCCCCCCCEEEECHHHHHCCCCCCEEEEEC
T ss_conf 52009999975183882578--4256201324444844515622733343112376758995589972066687089948
Q ss_pred CCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCC
Q ss_conf 32011221012111222112355765433310015653233442000011001123203311221000000023321002
Q gi|254780771|r 91 KPEVSFAIAGSILYPQAMHMEASSFEGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRN 170 (347)
Q Consensus 91 nP~~afA~i~~~l~~~~~~~~~~~~~~~I~~~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~ 170 (347)
+||++||++.++|+.. ......|||+|+|++++.+++++.|+|+++|++++.||+|+.|+++++|++++.||++
T Consensus 80 ~P~~~fA~~~~~f~~~------~~~~~~I~~~A~i~p~A~i~~~~~ig~~vvI~~~v~IG~~~~I~~~avIg~~~~IG~~ 153 (338)
T COG1044 80 DPYLAFAKVAQLFYRP------FNPAAGIHPTAVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDG 153 (338)
T ss_pred CCHHHHHHHHHHHCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEECCCCEECCCCEECCCCEECCC
T ss_conf 8067899999885147------7653554765531776703778732887498889787898589889788889688888
Q ss_pred CCCCEEEEEEE-EEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 33220233100-24420100000232134454335566653110444320000244445444433222222111112221
Q gi|254780771|r 171 CSIGAGSSIYS-SLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKI 249 (347)
Q Consensus 171 ~~I~~~~~I~~-~iIG~~~~I~~~~vIG~~GFgf~~~~~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~~t~Ig~~~~i 249 (347)
|+|++|++|++ +.||++|.|++|++||+|||||++...+|.|+||+|+|+|||+||||+|+|||||+|+||+||++|||
T Consensus 154 ~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~~~~g~~Ki~q~g~V~Igd~VeIGanT~Idrga~~dTvIg~~~kI 233 (338)
T COG1044 154 TVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQIGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKI 233 (338)
T ss_pred CEECCCCEEECCCEECCCEEECCCCEECCCCCCCCCCCCCCEECCEECEEEECCCEEECCCCEECCCCCCCCEECCCCEE
T ss_conf 58847878952757878228889988756852122466885671260659979824873552425655567265378487
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEEEECCCEECCCCEEEECCEEECCEEECCCCEECCCCEEEEEECCCCEEEEECCHHHHH
Q ss_conf 11234444650357718865556503636569729730687837859888889862532600007987899824175888
Q gi|254780771|r 250 DNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPIGE 329 (347)
Q Consensus 250 d~~v~i~hn~~iG~~~~~~~~~~~~g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~v~~~~~~~G~pa~~~~~ 329 (347)
||||||||||+||++|++++|++++||++||++|.||+++.+.+|++|||+++|++++.|.++||+++.|.|.||+|+++
T Consensus 234 dN~vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~v~igg~vgI~gh~~IgD~~~I~~~~~v~~~i~~~~~~gg~P~~p~k~ 313 (338)
T COG1044 234 DNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVGIAGHLEIGDGVTIGARSGVMASITEPGYSGGIPAQPIKE 313 (338)
T ss_pred CCEEEECCCCEECCCCEEECCCEEECCCEECCEEEECCCEEECCCEEECCCCEEECCCCCCCCCCCCCEECCCCCCHHHH
T ss_conf 64307815527888837702631613535778079876134648418757878804524312357886633677753999
Q ss_pred HHHHHHHHCCHHHHH
Q ss_conf 978678622826764
Q gi|254780771|r 330 YLRHMVMLSKPSKYK 344 (347)
Q Consensus 330 ~~~~~~~~~~l~~~~ 344 (347)
|+|..+.+++|++++
T Consensus 314 w~k~~a~~~~l~~~~ 328 (338)
T COG1044 314 WLKTAALIRRLPEMR 328 (338)
T ss_pred HHHHHHHHHHCHHHH
T ss_conf 999999985277789
No 4
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=100.00 E-value=0 Score=393.22 Aligned_cols=204 Identities=55% Similarity=0.897 Sum_probs=199.2
Q ss_pred CCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEE-EEEEEECCCCCEEEECCCCCCCCCCC
Q ss_conf 32334420000110011232033112210000000233210023322023310-02442010000023213445433556
Q gi|254780771|r 128 DVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIY-SSLIGNSVILHSGVRIGNDGFGYARG 206 (347)
Q Consensus 128 ~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~-~~iIG~~~~I~~~~vIG~~GFgf~~~ 206 (347)
+++|++++.|+|+++|+++++||+|++|+|+|+|+++++||++|.|+++++|+ ++.||++|.|+++++||+++|+|.+.
T Consensus 1 ~a~ig~~v~I~~~avI~~~v~Ig~n~~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~~f~~~~~ 80 (205)
T cd03352 1 SAKIGENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPD 80 (205)
T ss_pred CCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEECCCEECCCCEECCEEEECCCEEECCCCCCCCCC
T ss_conf 96919999999987999999999999998988999996889883660034472786875447771534862135323147
Q ss_pred CCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEECCCCEEE
Q ss_conf 66531104443200002444454444332222221111122211123444465035771886555650363656972973
Q gi|254780771|r 207 VSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIG 286 (347)
Q Consensus 207 ~~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~v~i~hn~~iG~~~~~~~~~~~~g~~~ig~~~~ig 286 (347)
...+.++||+|+|+|||+|+||++|+|+||++++|+||+++++||+|||||||+||++|++++++.++|+++|||+||||
T Consensus 81 ~~~~~~~~~~g~v~Ig~~v~Ig~~~~I~~g~~~~T~IG~~~~i~~~v~igh~~~iG~~~~i~~~~~~~g~~~Igd~~~iG 160 (205)
T cd03352 81 GGGWVKIPQLGGVIIGDDVEIGANTTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIG 160 (205)
T ss_pred CCCCEECCCCCCEEECCCEEECCCCEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCEEECCCCCCCCCEEECCCCEEC
T ss_conf 98404514213189848849888627636642677478776864545255640415870750320002652497435398
Q ss_pred ECCEEECCEEECCCCEECCCCEEEEEECCCCEEEEECCHHHHHHH
Q ss_conf 068783785988888986253260000798789982417588897
Q gi|254780771|r 287 GQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPIGEYL 331 (347)
Q Consensus 287 ~~~~i~~~v~ig~~~~i~a~s~v~~~v~~~~~~~G~pa~~~~~~~ 331 (347)
+++.++++++||++++|+|+|+|+||+||+++|.|+|||++|+|+
T Consensus 161 ~~s~i~~gv~IG~~a~VgagSvVtkdVp~~~iv~G~PAr~ir~~~ 205 (205)
T cd03352 161 GQVGIAGHLTIGDGVVIGAGSGVTSIVPPGEYVSGTPAQPHREWL 205 (205)
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCCCCCEEEEEECCHHHHHC
T ss_conf 964882993999998998688796486999699976284356419
No 5
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=100.00 E-value=0 Score=363.48 Aligned_cols=196 Identities=31% Similarity=0.478 Sum_probs=173.2
Q ss_pred CCCCCCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEECC
Q ss_conf 33310015653233442000011001123203311221000000023321002332202331002442010000023213
Q gi|254780771|r 118 GISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIG 197 (347)
Q Consensus 118 ~I~~~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vIG 197 (347)
.|||+|+|+|+|+|+++|.|+|+|+|+++|+||++|+|+++++|+.+++||++|. |+++++||
T Consensus 2 ~IHptAiI~~~A~Ig~~v~Igp~~vIg~~V~IG~~~~I~~~v~I~~~t~IG~~~~-----------------I~~~avIG 64 (256)
T PRK12461 2 MIHPTAVIDPSAKLGEGVEIGPFAVIGADVEIGDGTWIMPHAVILGWTRIGKNNK-----------------IHQGAVVG 64 (256)
T ss_pred CCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCEE-----------------EEECCCCC
T ss_conf 2999879899899999999999999999999999999949818919989997439-----------------97543117
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEC
Q ss_conf 4454335566653110444320000244445444433222222--11111222111234444650357718865556503
Q gi|254780771|r 198 NDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDD--TIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAG 275 (347)
Q Consensus 198 ~~GFgf~~~~~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~~--t~Ig~~~~id~~v~i~hn~~iG~~~~~~~~~~~~g 275 (347)
.++++|..... .+.|+|||+++|++|+||+||++++ |+||+++++|+++||||||.||++|+++++++++|
T Consensus 65 ~~pqd~~~~g~-------~~~v~IGd~~~Ire~~tI~rgt~~~~~T~IG~~~~im~~vhIaHd~~IG~~~iian~~~laG 137 (256)
T PRK12461 65 DEPQDFGYKGE-------ESHLIIGDNNVIREGVTIHRGTKGGTVTRIGNDNLLMANSHIAHDCQIGNNVILVNGALLAG 137 (256)
T ss_pred CCCCCCCCCCC-------CCEEEECCCCEECCCCCCCCCCCCCCCEEECCCCEEECCCCCCCCCCCCCCEEEECCEEECC
T ss_conf 63334441586-------20699899878798755678614898669887858743643346431367706722202324
Q ss_pred CCEECCCCEEEECCEEECCEEECCCCEECCCCEEEEEECCCCEEEEECCHHHHHHHHHHHHHCCH
Q ss_conf 63656972973068783785988888986253260000798789982417588897867862282
Q gi|254780771|r 276 STYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPIGEYLRHMVMLSKP 340 (347)
Q Consensus 276 ~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~v~~~~~~~G~pa~~~~~~~~~~~~~~~l 340 (347)
+++|||+|+||++++++++++||++|+|||+|+|+|||||+.++.|+||++... |...|||.
T Consensus 138 ~v~Igd~v~iGg~~~v~q~v~IG~~a~Ig~gS~V~kDVPp~~~v~G~pA~~~gl---N~vGl~R~ 199 (256)
T PRK12461 138 HVTVGDRAIISGNCLVHQFCRIGRLAMMAGGSRISKDVPPYCMMAGNTTNVHGL---NAVGLRRN 199 (256)
T ss_pred CEEECCCCEECCCCEECCCCEECCCCEECCCCEEEEECCCCEEEECCCCEEEEC---HHHHCCCC
T ss_conf 259999729957347717979999969987857775379983882687765401---04404528
No 6
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=100.00 E-value=0 Score=357.29 Aligned_cols=199 Identities=30% Similarity=0.455 Sum_probs=172.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEE
Q ss_conf 54333100156532334420000110011232033112210000000233210023322023310024420100000232
Q gi|254780771|r 116 EGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVR 195 (347)
Q Consensus 116 ~~~I~~~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~v 195 (347)
.+.|||+|+|+|+|+|++++.|+|+|+|+++|+||++|.|+++++|..+++||++|.|++ +++
T Consensus 2 ~~~IHptAiI~~~A~IG~~v~Igp~~vIg~~v~IG~~~~I~~~v~I~~~t~IG~~~~I~~-----------------~av 64 (261)
T PRK05289 2 MAKIHPTAIVEPGAEIGENVEIGPFCVIGPDVVIGDGTEIGSHVVIDGHTTIGKNNRIFP-----------------FAS 64 (261)
T ss_pred CCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEECCCEECCCCEECC-----------------CCC
T ss_conf 574089889899899999899999999999999999999979968918988898834524-----------------753
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf 13445433556665311044432000024444544443322222---211111222111234444650357718865556
Q gi|254780771|r 196 IGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTID---DTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVG 272 (347)
Q Consensus 196 IG~~GFgf~~~~~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~---~t~Ig~~~~id~~v~i~hn~~iG~~~~~~~~~~ 272 (347)
||.+++.+.... . -..|+|||+++|++++||+||+.. .|+||+++++|++|||||||.||++|+++++++
T Consensus 65 IG~~pqd~~~~g-----~--~~~v~IGd~~~Ire~vtI~rgT~~~~g~T~IG~~~~im~~vhIaHd~~IG~~~iian~~~ 137 (261)
T PRK05289 65 IGEEPQDLKYKG-----E--PTRLVIGDNNTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNNVILANNAT 137 (261)
T ss_pred CCCCCCCCCCCC-----C--CCEEEECCCCEECCCCEECCCCCCCCCCEEECCCCEEECCCCCCCCCCCCCCCEECCCEE
T ss_conf 377876666069-----8--536998997789854144366105886449888854400364344551278716543056
Q ss_pred EECCCEECCCCEEEECCEEECCEEECCCCEECCCCEEEEEECCCCEEEEECCHHHHHHHHHHHHHCCHH
Q ss_conf 503636569729730687837859888889862532600007987899824175888978678622826
Q gi|254780771|r 273 IAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPIGEYLRHMVMLSKPS 341 (347)
Q Consensus 273 ~~g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~v~~~~~~~G~pa~~~~~~~~~~~~~~~l~ 341 (347)
++|+++|||+|+||++++++++++||++|+|+|+|+|+|||||+.++.|+|||+... |...|||.+
T Consensus 138 laG~v~Igd~v~iGg~~~v~q~v~IG~~a~vgagS~V~kDVpp~~~v~G~PAr~~gl---N~vGL~R~g 203 (261)
T PRK05289 138 LAGHVEVGDYAIIGGLSGVHQFVRIGAHAMVGGMSAVVQDVPPYVLAEGNPARLRGL---NIVGLKRRG 203 (261)
T ss_pred ECCCEEECCCEEECCCCEECCCCEECCCEEECCCCEECCCCCCCCEEECCCCEEEEE---EHHHHHHCC
T ss_conf 646079889709976156648839898719997636542479986784683568861---288886779
No 7
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=100.00 E-value=0 Score=345.23 Aligned_cols=195 Identities=32% Similarity=0.471 Sum_probs=170.5
Q ss_pred CCCCCCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEECC
Q ss_conf 33310015653233442000011001123203311221000000023321002332202331002442010000023213
Q gi|254780771|r 118 GISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIG 197 (347)
Q Consensus 118 ~I~~~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vIG 197 (347)
.|||+|+|+|+|+|+++|.|+|+|+|+++++||++|+|+++++|..+++||++|.|++ +++||
T Consensus 1 ~IHptAiI~~~A~IG~~v~Igp~~vIg~~V~IG~~~~I~~~v~I~~~t~IG~~~~I~~-----------------~avIG 63 (254)
T cd03351 1 MIHPTAIVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFP-----------------FASIG 63 (254)
T ss_pred CCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCEEECC-----------------CCCCC
T ss_conf 9189779699899999799999989999999999999979968919979776525605-----------------75347
Q ss_pred CCC--CCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf 445--433556665311044432000024444544443322222---211111222111234444650357718865556
Q gi|254780771|r 198 NDG--FGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTID---DTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVG 272 (347)
Q Consensus 198 ~~G--Fgf~~~~~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~---~t~Ig~~~~id~~v~i~hn~~iG~~~~~~~~~~ 272 (347)
.++ +.|.. .-.+|+|||++.|++++||+||+.. .|+||++++|++++||||||.||++|++++++.
T Consensus 64 ~~pqd~~~~g---------~~~~v~IG~~~~Ire~vtI~rgt~~~~~~T~IG~~~~im~~~HIaHdc~IG~~~iian~~~ 134 (254)
T cd03351 64 EAPQDLKYKG---------EPTRLEIGDNNTIREFVTIHRGTAQGGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNAT 134 (254)
T ss_pred CCCCCCCCCC---------CCCEEEECCCCEECCCCCCCCCCCCCCCCEEECCCCEEEECCCCCCCCCCCCCEEEECCCC
T ss_conf 7876767379---------8676997997789953302367437887559788857820254456773379759933445
Q ss_pred EECCCEECCCCEEEECCEEECCEEECCCCEECCCCEEEEEECCCCEEEEECCHHHHHHHHHHHHHCCHH
Q ss_conf 503636569729730687837859888889862532600007987899824175888978678622826
Q gi|254780771|r 273 IAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPIGEYLRHMVMLSKPS 341 (347)
Q Consensus 273 ~~g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~v~~~~~~~G~pa~~~~~~~~~~~~~~~l~ 341 (347)
++|+++|||+||||+++.++++++||++|+|+|+|+|+|||||+.++.|+|||+... |...|||.+
T Consensus 135 laGhv~Igd~a~IGg~~~v~q~v~IG~~a~Igags~V~kDVpp~~~v~G~PA~~~gl---N~vGl~R~g 200 (254)
T cd03351 135 LAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGGSGVVQDVPPYVIAAGNRARLRGL---NLVGLKRRG 200 (254)
T ss_pred CCCCEEECCCCEECCCCEECCCCEECCCEEECCCCEEECCCCCCCEECCCCCEEEEE---EHHHHHHCC
T ss_conf 568569899848988367759819996619976745611369872651796578721---489886779
No 8
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; InterPro: IPR010137 This entry describes LpxA, an enzyme for the biosynthesis of lipid A, a component of lipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat.; GO: 0008780 acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity, 0008610 lipid biosynthetic process.
Probab=100.00 E-value=0 Score=344.73 Aligned_cols=197 Identities=28% Similarity=0.400 Sum_probs=174.4
Q ss_pred CCCCCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCC
Q ss_conf 33100156532334420000110011232033112210000000233210023322023310024420100000232134
Q gi|254780771|r 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGN 198 (347)
Q Consensus 119 I~~~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vIG~ 198 (347)
|||||.|+|.|+|+++|.|||||+|+++|+||++|.|.++++|...++||++|.|+| +|+||.
T Consensus 1 IHPTA~ie~gA~iG~~V~iGPf~~v~~~V~ig~g~~l~shV~i~G~T~iG~~~~i~p-----------------~A~iG~ 63 (257)
T TIGR01852 1 IHPTAIIEPGAEIGEDVEIGPFCIVGPGVKIGDGVELKSHVVIEGHTTIGEGTKIFP-----------------GAVIGG 63 (257)
T ss_pred CCCCEEECCCCEECCCCEEEEEEEECCCCEECCCCEECCCEEEECCEEECCCCEEEC-----------------CEEECC
T ss_conf 996218788668289857801888789758868858757368967708789988807-----------------607679
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEC
Q ss_conf 45433556665311044432000024444544443322222---211111222111234444650357718865556503
Q gi|254780771|r 199 DGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTID---DTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAG 275 (347)
Q Consensus 199 ~GFgf~~~~~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~---~t~Ig~~~~id~~v~i~hn~~iG~~~~~~~~~~~~g 275 (347)
+ |.+-++.-.+ -.|+||||+.|.+.+||.|||.+ -|+||++|.++-++||||||.||++|+++|.+.|||
T Consensus 64 ~-----PQdlky~GE~--t~l~IG~~n~IRE~VTi~~GT~~g~g~T~iG~~nllMAysHvAHDC~vGn~vv~aN~a~LAG 136 (257)
T TIGR01852 64 E-----PQDLKYKGER--TELIIGDNNTIREFVTINRGTKSGGGVTSIGNNNLLMAYSHVAHDCVVGNHVVLANNATLAG 136 (257)
T ss_pred C-----CCCCEECCCC--CEEEECCCCEEEEEEEECCCCCCCCCEEEECCCCEECCCCEEEECCEECCEEEEECCCEECE
T ss_conf 8-----8565014870--17998896569755785066258888899888765720535612436888169813631222
Q ss_pred CCEECCCCEEEECCEEECCEEECCCCEECCCCEEEEEECCCCEEEEE-CCHHHHHHHHHHHHHCCHHH
Q ss_conf 63656972973068783785988888986253260000798789982-41758889786786228267
Q gi|254780771|r 276 STYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGM-PARPIGEYLRHMVMLSKPSK 342 (347)
Q Consensus 276 ~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~v~~~~~~~G~-pa~~~~~~~~~~~~~~~l~~ 342 (347)
+|.|||+|+|||++.++|++|||.+||||+.|.|.+||||+.++.|+ ||++... |...|||.+-
T Consensus 137 HV~vgD~a~iGG~~avHQFvRIG~~aMigG~s~v~~DvpPY~~~~G~~~a~l~Gl---N~vGLrR~Gf 201 (257)
T TIGR01852 137 HVEVGDYAIIGGLVAVHQFVRIGRYAMIGGLSAVSKDVPPYGLVEGNSRAVLRGL---NIVGLRRRGF 201 (257)
T ss_pred EEEECCEEEECCCCCEEEEEEEHHHHHHHHHCCCCCCCCCCEEECCCCCCEEEEE---EEEEEECCCC
T ss_conf 7998889997789721101330002322120024678776178637875337887---0132213787
No 9
>TIGR01173 glmU UDP-N-acetylglucosamine pyrophosphorylase; InterPro: IPR005882 N-Acetylglucosamine-1-PO(4) uridyltransferase (GlmU, 2.7.7.23 from EC) is a trimeric bifunctional enzyme that catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-GlcNAc. The X-ray crystal structure of Escherichia coli GlmU in complex with UDP-GlcNAc and CoA has been determined to 2.1 A resolution and reveals a two-domain architecture that is responsible for these two reactions . The C-terminal domain is responsible for the CoA-dependent acetylation of Glc-1-PO(4) to GlcNAc-1-PO(4) and displays the longest left-handed parallel beta-helix observed to date. The acetyltransferase active site defined by the binding site for CoA makes use of residues from all three subunits and is positioned beneath an open cavity large enough to accommodate the Glc-1-PO(4) acetyl acceptor. The N-terminal domain catalyzes uridyl transfer from UTP to GlcNAc-1-PO(4) to form the final products UDP-GlcNAc and pyrophosphate. This domain is composed of a central seven-stranded beta-sheet surrounded by six alpha-helices in a Rossmann fold-like topology. ; GO: 0003977 UDP-N-acetylglucosamine diphosphorylase activity, 0009103 lipopolysaccharide biosynthetic process.
Probab=100.00 E-value=0 Score=301.06 Aligned_cols=265 Identities=28% Similarity=0.340 Sum_probs=221.0
Q ss_pred CCHHHCCCCCEEEECC--HHHHHHHHHCCCEEEEECHHHHHCCCCCC---CCEECC--------CCCHHHHHHCCCCCCC
Q ss_conf 7988889986999618--67677775458569998877610144455---310012--------3201122101211122
Q gi|254780771|r 40 SPIARASTGDISYIIS--RKFLNNIEKCKASAIICSQDIVPFIPKNI---PCLLSD--------KPEVSFAIAGSILYPQ 106 (347)
Q Consensus 40 ~~l~~A~~~~IsFi~~--~kyl~~l~~s~A~aiI~~~d~~~~~~~~~---~~Iiv~--------nP~~afA~i~~~l~~~ 106 (347)
..+.+.+.|-++|-.. +++|++|+++||+-.||.+|+++++..+- ....+. |-|...|++.+.|..+
T Consensus 169 k~I~eiNtG~y~~~~~~L~~~L~~l~n~NaqgEYYLTD~ia~a~~~g~~v~~~~~~d~~E~~GvNdR~qLa~lE~~~q~r 248 (461)
T TIGR01173 169 KAIKEINTGVYVFDGAALKRWLPKLSNNNAQGEYYLTDVIALAVADGEEVRAVQVDDSEEVLGVNDRLQLAQLERILQRR 248 (461)
T ss_pred HCCCEEEEEEEEECHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECCHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 03527888799983289998887628770444314789999985089478999808759833667988999999999999
Q ss_pred CCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEE
Q ss_conf 2112355765433310-015653233442000011001123203311221000000023321002332202331002442
Q gi|254780771|r 107 AMHMEASSFEGGISPQ-AFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIG 185 (347)
Q Consensus 107 ~~~~~~~~~~~~I~~~-a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG 185 (347)
..+.++.......+|. ..|.++++++.+|.|.|+++|+.+++||++|.|||+|.|. |+.||+++.|.|++++.++.||
T Consensus 249 ~~~~l~~~GVt~~dP~~~~i~~~v~~G~Dv~I~~~v~leG~v~iG~~v~IGp~~~I~-ns~I~~~~~I~~~s~~e~~~ig 327 (461)
T TIGR01173 249 IAKKLLLQGVTLIDPARTDIRGTVEIGQDVVIDPNVILEGKVQIGDDVVIGPGCVIK-NSVIGSNAVIKPYSVLEGSEIG 327 (461)
T ss_pred HHHHHHHCCCEEECCCEEEECCCEEECCEEEECCCCEECCEEEECCCEEECCCCEEE-EEEECCCCEEEEEEECCCCEEC
T ss_conf 999898589299868337873547987716975583883407987870788985899-7288688558888841467861
Q ss_pred ECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCC
Q ss_conf 0100000232134454335566653110444320000244445444433222222111112221112-----34444650
Q gi|254780771|r 186 NSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQ-----VQIGHNVH 260 (347)
Q Consensus 186 ~~~~I~~~~vIG~~GFgf~~~~~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~-----v~i~hn~~ 260 (347)
++|.|+|.|.+ |++.....- +.||+.||+- ++.||+++|..+| +.||.||+
T Consensus 328 ~~~~vGPFArL--------RP~~~L~~~-----~hiGNFVE~K-----------na~iG~gsKA~HLsYlGDAeiG~~vN 383 (461)
T TIGR01173 328 EGCDVGPFARL--------RPGSVLGAG-----VHIGNFVEVK-----------NARIGEGSKAGHLSYLGDAEIGSNVN 383 (461)
T ss_pred CCCEECCCCCC--------CCCCHHHCC-----CEEEEEEEEE-----------CCEECCCCCCCCCCEEEEEEECCCCE
T ss_conf 56402773001--------864321177-----8160258652-----------47618864423143332025079600
Q ss_pred CCCCEEEEEEEEEEC-CCEECCCCEEEECCEEECCEEECCCCEECCCCEEEEEECCCCEEEEECCHHHHH
Q ss_conf 357718865556503-636569729730687837859888889862532600007987899824175888
Q gi|254780771|r 261 IGCGCIIVSQVGIAG-STYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPIGE 329 (347)
Q Consensus 261 iG~~~~~~~~~~~~g-~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~v~~~~~~~G~pa~~~~~ 329 (347)
||++||+|||+|.++ .|+|||+||||+++.+.++|+||++|+|||||+||+|||++++....+.+.+.|
T Consensus 384 iGAGtITcNYDG~nK~~T~IGd~VFiGSnt~LVAPV~iG~gA~iaAGstvt~DVp~g~La~~R~~Q~~ie 453 (461)
T TIGR01173 384 IGAGTITCNYDGVNKHKTIIGDGVFIGSNTQLVAPVKIGDGATIAAGSTVTKDVPEGALAIARARQRNIE 453 (461)
T ss_pred ECCEEEEEECCCCCCCCCEECCCCEECCCCEEECCEEECCCCEECCCCEEECCCCCCCCEEECCCCEECC
T ss_conf 3231689932796220348648878776760455439438118712414802348885266245565522
No 10
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=100.00 E-value=0 Score=298.70 Aligned_cols=197 Identities=31% Similarity=0.456 Sum_probs=173.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEE
Q ss_conf 54333100156532334420000110011232033112210000000233210023322023310024420100000232
Q gi|254780771|r 116 EGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVR 195 (347)
Q Consensus 116 ~~~I~~~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~v 195 (347)
.+.|||||.|+|.|+|+++|.|||+|+|+++|+||+++.|+++++|...++||+++.|++. ++
T Consensus 3 ~~~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~-----------------A~ 65 (260)
T COG1043 3 MAKIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPF-----------------AS 65 (260)
T ss_pred CCCCCCCEEECCCCCCCCCCEECCEEEECCCCEECCCCEECCCEEEECCCEECCCCEEECC-----------------CC
T ss_conf 5645762152787882899888833798897198899588343799677077789879111-----------------04
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf 1344543355666531104443200002444454444332222---2211111222111234444650357718865556
Q gi|254780771|r 196 IGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTI---DDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVG 272 (347)
Q Consensus 196 IG~~GFgf~~~~~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~---~~t~Ig~~~~id~~v~i~hn~~iG~~~~~~~~~~ 272 (347)
||.+ |.+-++.-.|. +++|||++.|.+.+||.|||. +.|+||+++.++-.+||||||.||++|+++|++.
T Consensus 66 iG~~-----pQdlKykge~T--~l~IG~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnat 138 (260)
T COG1043 66 IGED-----PQDLKYKGEPT--RLIIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNAT 138 (260)
T ss_pred CCCC-----CCCCCCCCCCE--EEEECCCCEEEEEEEEECCCCCCCEEEEECCCCEEEEEEEEECCCEECCCEEEECCCE
T ss_conf 2898-----75450279842--7998899758668898615447861599778878987310313444567179966866
Q ss_pred EECCCEECCCCEEEECCEEECCEEECCCCEECCCCEEEEEECCCCEEEEECCHHHHHHHHHHHHHCC
Q ss_conf 5036365697297306878378598888898625326000079878998241758889786786228
Q gi|254780771|r 273 IAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPIGEYLRHMVMLSK 339 (347)
Q Consensus 273 ~~g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~v~~~~~~~G~pa~~~~~~~~~~~~~~~ 339 (347)
|+|++.|||+++|||.+.++|.++||++||+|+.|.|.+||||+.++.||||++-.. |...|||
T Consensus 139 LAGHV~igD~aiiGG~saVHQF~rIG~~amiGg~S~v~~DVpPy~~~~Gn~a~l~Gl---N~vGlkR 202 (260)
T COG1043 139 LAGHVEVGDYAIIGGLSAVHQFVRIGAHAMIGGLSAVSQDVPPYVIASGNHARLRGL---NIVGLKR 202 (260)
T ss_pred EECEEEECCEEEECCCCEEEEEEEECCHHEECCCHHHCCCCCCEEEECCCCCCCCCC---CEEEEEE
T ss_conf 854078877899747523777889740112344101036779838852870442121---3220110
No 11
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=100.00 E-value=0 Score=269.28 Aligned_cols=183 Identities=33% Similarity=0.499 Sum_probs=163.5
Q ss_pred CCCCC-CCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEE
Q ss_conf 43331-00156532334420000110011232033112210000000233210023322023310024420100000232
Q gi|254780771|r 117 GGISP-QAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVR 195 (347)
Q Consensus 117 ~~I~~-~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~v 195 (347)
..||| +++|+++++|++++.|+|+++|+++++||++|+|+++|+|+ ++.||++|.|++++++.++.||++|.|++++.
T Consensus 3 ~~i~p~s~~I~~~v~IG~~v~I~p~~~I~~~v~IG~~~~Ig~~~~I~-~~~IG~~~~I~~~~vi~~~~ig~~~~IG~~~~ 81 (193)
T cd03353 3 TLIDPETTYIDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIK-DSTIGDGVVIKASSVIEGAVIGNGATVGPFAH 81 (193)
T ss_pred EEECCCEEEECCCCEECCCCEECCCEEEECCCEECCCCEECCCEEEC-CCEECCCCEECCCEECCCCEECCCCEECCCEE
T ss_conf 79589806999982999999998982992985999998995734577-86888874002100113525176526668507
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCEEEEEE
Q ss_conf 134454335566653110444320000244445444433222222111112221112-----344446503577188655
Q gi|254780771|r 196 IGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQ-----VQIGHNVHIGCGCIIVSQ 270 (347)
Q Consensus 196 IG~~GFgf~~~~~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~-----v~i~hn~~iG~~~~~~~~ 270 (347)
|.. .+.|+++++||.++++. +|+|+++++++++ |+|+|||.||++++++++
T Consensus 82 i~~-------------------~~~I~~~~~iG~~v~i~-----~~~ig~~~~i~h~~~igd~~Ig~~v~Ig~~~i~~n~ 137 (193)
T cd03353 82 LRP-------------------GTVLGEGVHIGNFVEIK-----KSTIGEGSKANHLSYLGDAEIGEGVNIGAGTITCNY 137 (193)
T ss_pred ECC-------------------CCEECCEEEECCCEEEE-----CCCCCCCCEECCEEECCCCEECCCCEECCCEEEECC
T ss_conf 658-------------------76887516742535764-----443368848772446188567778888667588734
Q ss_pred EEEECC-CEECCCCEEEECCEEECCEEECCCCEECCCCEEEEEECCCCEEEEECCH
Q ss_conf 565036-3656972973068783785988888986253260000798789982417
Q gi|254780771|r 271 VGIAGS-TYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPAR 325 (347)
Q Consensus 271 ~~~~g~-~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~v~~~~~~~G~pa~ 325 (347)
++++++ ++|||+||||++++++++++||++++++|+|+|+||+||+++++|. ||
T Consensus 138 ~g~~~~~t~IGd~v~IG~~~~i~~~v~IG~~a~Igags~V~kdVpp~~lvvg~-~~ 192 (193)
T cd03353 138 DGVNKHRTVIGDNVFIGSNSQLVAPVTIGDGATIAAGSTITKDVPPGALAIAR-AR 192 (193)
T ss_pred CCCCCCCCEECCCCEECCCCEEECCEEECCCCEECCCCEECCCCCCCCEEEEE-CC
T ss_conf 34335623433561898898798983999998998698888423999789962-48
No 12
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=3.4e-44 Score=258.44 Aligned_cols=258 Identities=18% Similarity=0.259 Sum_probs=191.4
Q ss_pred EECCHHH----HHHHHHCCCEEEEECHHHHHCCCCCCCCE---ECC--------CCCHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 9618676----77775458569998877610144455310---012--------32011221012111222112355765
Q gi|254780771|r 52 YIISRKF----LNNIEKCKASAIICSQDIVPFIPKNIPCL---LSD--------KPEVSFAIAGSILYPQAMHMEASSFE 116 (347)
Q Consensus 52 Fi~~~ky----l~~l~~s~A~aiI~~~d~~~~~~~~~~~I---iv~--------nP~~afA~i~~~l~~~~~~~~~~~~~ 116 (347)
|+.+.+. ++.+...+++-.++.+|+.+.+..+-..+ ... |.+..++.+.+.+..+..+.......
T Consensus 173 y~f~~~~l~~~L~~i~~~n~~gEyyLTDii~~~~~~g~~v~~v~~~~~~e~~GvN~~~~La~~e~~~~~~~~~~~m~~GV 252 (456)
T PRK09451 173 LVANGADLKRWLAKLTNNNAQGEYYITDIIALAYQEGREIVAVHPTRLSEVEGVNNRLQLARLERVYQAEQAEKLLLAGV 252 (456)
T ss_pred EEECHHHHHHHHHHCCCCCCCCCEEECHHHHHHHHCCCEEEEEECCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99579999998875067554562563056788874695799998288799446798999999899999989999986798
Q ss_pred CCCCC-CCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEE
Q ss_conf 43331-00156532334420000110011232033112210000000233210023322023310024420100000232
Q gi|254780771|r 117 GGISP-QAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVR 195 (347)
Q Consensus 117 ~~I~~-~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~v 195 (347)
..++| +..|.+++.+++++.|+|+++|+.+++||+||.|+++|+|. |++||++|.|+++++|.+++||++|.|++.|.
T Consensus 253 ti~dP~~~~I~~~v~ig~dv~I~~nvvi~G~v~IG~~v~Ig~g~~I~-ns~Ig~~~~I~~~S~Ie~s~Ig~~~~IGPfA~ 331 (456)
T PRK09451 253 MLRDPARFDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGAGCVLK-NCVIGDDCEISPYSVVEDANLGAACTIGPFAR 331 (456)
T ss_pred EEECCCEEEEECCEEECCCEEECCCEEEECCEEECCCEEECCCEEEE-CCEECCCCEEECCEEECCCEECCCCEECCCCC
T ss_conf 88158807770328965750775770884424757975982407985-76984687894225650663436716888643
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEC
Q ss_conf 13445433556665311044432000024444544443322222211111222111234444650357718865556503
Q gi|254780771|r 196 IGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAG 275 (347)
Q Consensus 196 IG~~GFgf~~~~~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~v~i~hn~~iG~~~~~~~~~~~~g 275 (347)
| ++...... .+.||+.|||- |++|.+| |.+++-+||++ ..||.+|.||++|++|||.|..+
T Consensus 332 l--------Rp~t~i~~-----~~~iGnfvEiK-~s~i~~g----~k~~HlsYiGD-a~iG~~~NiGAGtit~NyDG~~K 392 (456)
T PRK09451 332 L--------RPGAELLE-----GAHVGNFVEMK-KARLGKG----SKAGHLTYLGD-AEIGDNVNIGAGTITCNYDGANK 392 (456)
T ss_pred C--------CCCCEECC-----CCEEEEEEEEE-CCEECCC----CEECCEEEECC-CEECCCCEECCCEEEEECCCCCC
T ss_conf 4--------88762367-----88882289982-4597589----77042336614-47658868888769972248766
Q ss_pred -CCEECCCCEEEECCEEECCEEECCCCEECCCCEEEEEECCCCEEEEECCHHHHH
Q ss_conf -636569729730687837859888889862532600007987899824175888
Q gi|254780771|r 276 -STYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPIGE 329 (347)
Q Consensus 276 -~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~v~~~~~~~G~pa~~~~~ 329 (347)
.|+|||+|++|.++.+.++++||++|++||||+||+|||+++++.+.+-+...+
T Consensus 393 ~~t~igd~~fiGsn~~lvapv~iG~~a~i~aGs~it~dVp~~~l~i~r~~q~~~~ 447 (456)
T PRK09451 393 FKTIIGDDVFVGSDTQLVAPVTVGKGATIGAGTTVTRDVAENELVISRVPQRHIQ 447 (456)
T ss_pred CCCEECCCCEECCCCEEECCEEECCCCEECCCCEECCCCCCCCEEECCCCCCCCC
T ss_conf 5648789829987844835849889979998987885069997777046623355
No 13
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3.1e-43 Score=253.29 Aligned_cols=271 Identities=28% Similarity=0.350 Sum_probs=214.6
Q ss_pred CHHHCCCCCEEEECC--HHHHHHHHHCCCEEEEECHHHHHCCCCC---CC--------CEECCCCCHHHHHHCCCCCCCC
Q ss_conf 988889986999618--6767777545856999887761014445---53--------1001232011221012111222
Q gi|254780771|r 41 PIARASTGDISYIIS--RKFLNNIEKCKASAIICSQDIVPFIPKN---IP--------CLLSDKPEVSFAIAGSILYPQA 107 (347)
Q Consensus 41 ~l~~A~~~~IsFi~~--~kyl~~l~~s~A~aiI~~~d~~~~~~~~---~~--------~Iiv~nP~~afA~i~~~l~~~~ 107 (347)
.+.+.+.+-+.|-.. .++++.+.+.+|+-.||.+|+++.+..+ .. .+.--|.|..+|++.+.|..+.
T Consensus 167 ~I~eiNtGiy~f~~~~L~~~L~~l~nnNaqgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~ 246 (460)
T COG1207 167 QIKEINTGIYAFDGAALLRALPKLSNNNAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRI 246 (460)
T ss_pred CCCEEEEEEEEECHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHCCCEEEEEECCCHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 08388206899867999999987256665574868999999985797699996696688627674999999999999999
Q ss_pred CCCCCCCCCCCCCC-CCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEE
Q ss_conf 11235576543331-00156532334420000110011232033112210000000233210023322023310024420
Q gi|254780771|r 108 MHMEASSFEGGISP-QAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGN 186 (347)
Q Consensus 108 ~~~~~~~~~~~I~~-~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~ 186 (347)
.+.++......++| +.+|+.++.|+.++.|.|++.+..+++||++|.|+|+|+|. ++.||+++.|.+.+++.++.||+
T Consensus 247 ~~~~m~~GVtl~dP~t~~i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~-ds~I~~~a~I~~~S~ie~s~vg~ 325 (460)
T COG1207 247 AEKLMLAGVTLIDPATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIK-DSVIGDNAVIKAYSVIEGSTVGE 325 (460)
T ss_pred HHHHHHCCCEEECCCEEEECCCEEECCCEEEECCCEEEEEEEECCCEEECCCCEEE-EEEECCCCEEEECCEEECCEECC
T ss_conf 99999769599678848873717987814991484894158967964999996787-53876998897510430558547
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 10000023213445433556665311044432000024444544443322222211111222111234444650357718
Q gi|254780771|r 187 SVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCI 266 (347)
Q Consensus 187 ~~~I~~~~vIG~~GFgf~~~~~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~v~i~hn~~iG~~~~ 266 (347)
+|.|++.+.+ +++...-.- +.||+.||+-- ++|..| |-.++-+||++ ..||-+|+||++++
T Consensus 326 ~~~VGPfA~L--------RPg~~L~~~-----~hIGNFVEvK~-a~ig~g----sKa~HLtYlGD-A~iG~~~NiGAGtI 386 (460)
T COG1207 326 GATVGPFARL--------RPGAVLGAD-----VHIGNFVEVKK-ATIGKG----SKAGHLTYLGD-AEIGENVNIGAGTI 386 (460)
T ss_pred CCCCCCCCCC--------CCCCCCCCC-----CEEEEEEEEEC-CCCCCC----CCCCCEEEECC-CEECCCCEECCCEE
T ss_conf 9633783101--------796852679-----76742599843-560688----63353234213-32068742144259
Q ss_pred EEEEEEEEC-CCEECCCCEEEECCEEECCEEECCCCEECCCCEEEEEECCCCEEEEECCHHHHHHH
Q ss_conf 865556503-63656972973068783785988888986253260000798789982417588897
Q gi|254780771|r 267 IVSQVGIAG-STYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPIGEYL 331 (347)
Q Consensus 267 ~~~~~~~~g-~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~v~~~~~~~G~pa~~~~~~~ 331 (347)
+|||.|.++ .|+|||++|+|+++.+..+|+||+++++||||+||+|||++++..+.+-+..++=|
T Consensus 387 tcNYDG~nK~~T~IGd~vFiGSns~LVAPV~IGd~a~iaAGStIT~DVp~~aLai~RarQ~~~egw 452 (460)
T COG1207 387 TCNYDGKNKFKTIIGDNVFIGSNSQLVAPVTIGDGATIAAGSTITKDVPEGALAISRARQTNKEGW 452 (460)
T ss_pred EECCCCCCCCEEEECCCCEECCCCCEEEEEEECCCCEECCCCEECCCCCCCCEEEEECCEEECCCC
T ss_conf 984788633200646885776687188648966984881463683657998446740441432442
No 14
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; InterPro: IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (2.3.1 from EC) catalyses an early step in lipid A biosynthesis : UDP-3-O-(3-hydroxytetradecanoyl)glucosamine + (R)-3-hydroxytetradecanoyl- [acyl carrier protein] = UDP-2,3-bis(3-hydroxytetradecanoyl)glucosamine + [acyl carrier protein] Members of this family also contain a hexapeptide repeat (IPR001451 from INTERPRO). This entry represents the non-repeating region of LPXD proteins.; GO: 0016747 transferase activity transferring groups other than amino-acyl groups, 0009245 lipid A biosynthetic process.
Probab=99.98 E-value=2.1e-33 Score=199.92 Aligned_cols=290 Identities=26% Similarity=0.336 Sum_probs=183.0
Q ss_pred CCCCCHHHHHHHHCCEEECCCCCCEEECCCCCH---HHCCCCCEEEECCHHHHHHHHHCCCEEEEECHHHHHCCCCCCCC
Q ss_conf 788039999998466995577663387156798---88899869996186767777545856999887761014445531
Q gi|254780771|r 10 HKGIALMKLAQSIGASLLDENFGERMIYSLSPI---ARASTGDISYIISRKFLNNIEKCKASAIICSQDIVPFIPKNIPC 86 (347)
Q Consensus 10 ~~~~sl~eIa~~l~~~l~g~~~~d~~I~~I~~l---~~A~~~~IsFi~~~kyl~~l~~s~A~aiI~~~d~~~~~~~~~~~ 86 (347)
.+.+.++.++.+..++-.. =..+.+-+.. .+.+.+- .|++.....+.+.+ +-.++++......+.. +..
T Consensus 15 ~g~~~i~~v~~l~~A~~~~----itF~~n~K~~~~l~~~~AgA-v~~~~~~~~~~~~~-~~~~L~v~~P~l~fA~--~~~ 86 (336)
T TIGR01853 15 EGDIKISGVAPLEKAKAEH----ITFLANPKYLKELKSSKAGA-VIVSADDQSKLVPK-KCAALVVKDPYLAFAK--VAE 86 (336)
T ss_pred CCCEEEEEECCCCCCCCCC----EEEECCHHHHHHHHCCCCEE-EEEEHHHCCCCCCC-CCCEEEECCCHHHHHH--HHH
T ss_conf 6766885307633588022----66533804787651577407-99715661785523-2505781781799999--998
Q ss_pred EECCCCCH-HHHHHCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCC
Q ss_conf 00123201-122101211122211235--576543331001565323344200001100112320331122100000002
Q gi|254780771|r 87 LLSDKPEV-SFAIAGSILYPQAMHMEA--SSFEGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGA 163 (347)
Q Consensus 87 Iiv~nP~~-afA~i~~~l~~~~~~~~~--~~~~~~I~~~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~ 163 (347)
++...|.. ..||...-|+|....... ......|-|.++|+.++.||+++.|+|+|+|+++|+||++|+|+|+++|+.
T Consensus 87 ~F~~~~~~~lvaR~~~gi~p~a~~~~~a~~~~~v~I~pnvvIG~~v~IG~~~~I~pg~~iG~~v~IG~~~~i~~~v~i~~ 166 (336)
T TIGR01853 87 LFDPPPKRLLVARMEAGIHPTAVVEPSAKIGEGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSVIYPNVVIYE 166 (336)
T ss_pred HHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEECCEEEECCCCEECCCCEECCCCEECCCCEECCCCEEECCCEEEE
T ss_conf 60887650121101035676873056531078436875417888868778636357768768868799677806708972
Q ss_pred CCCCCCCCCCCEEEEEEEE---------------------EEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEC
Q ss_conf 3321002332202331002---------------------4420100000232134454335566653110444320000
Q gi|254780771|r 164 GVRIGRNCSIGAGSSIYSS---------------------LIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQ 222 (347)
Q Consensus 164 ~~~IG~~~~I~~~~~I~~~---------------------iIG~~~~I~~~~vIG~~GFgf~~~~~~~~~~~~~G~v~Ig 222 (347)
++.||+||.|+++++|..+ +|+|+|.|++|+.|=--=| ++..++- ++.|.
T Consensus 167 ~~~lG~nV~I~~GaVIG~DGFGya~~~~g~~~KI~q~G~ViI~D~VEIGANTtIDRg~~-----~dT~i~~----gtKID 237 (336)
T TIGR01853 167 RVQLGKNVIIHAGAVIGSDGFGYAHTANGGHVKIPQIGRVIIEDDVEIGANTTIDRGAF-----DDTVIGE----GTKID 237 (336)
T ss_pred CCEECCEEEECCCCEECCCCCCEEECCCCCEEEEEEECEEEEECEEEECCCCHHHCCCC-----CCCEEEC----CCEEC
T ss_conf 41564715876887886787320357889715441302489602338746870211021-----4718723----84662
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEECCCCEEEECCEEECCEEECCCCE
Q ss_conf 24444544443322222211111222111234444650357718865556503636569729730687837859888889
Q gi|254780771|r 223 DKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQ 302 (347)
Q Consensus 223 ~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~v~i~hn~~iG~~~~~~~~~~~~g~~~ig~~~~ig~~~~i~~~v~ig~~~~ 302 (347)
|=|.|+-|| +||+||.|=.+|=|+=-++||+||+|++|+|++||..|||++.|++++++...| -++..
T Consensus 238 NLVQIAHNc----------~IG~n~~ivaqvGiaGSt~iG~~V~~GGqvGv~GHl~IgD~v~i~A~sgV~~~~--~~~~~ 305 (336)
T TIGR01853 238 NLVQIAHNC----------RIGENCIIVAQVGIAGSTKIGRNVILGGQVGVAGHLEIGDNVTIGAKSGVTKSV--PPNGR 305 (336)
T ss_pred CEEEEEEEE----------EECCCCEEEEEEECCEEEEECCEEEECCEEEEECEEEECCCCEEEEECCCCCCC--CCCCC
T ss_conf 315741334----------626642789642011346755806962602651108943834884512206777--98860
Q ss_pred ECCCCEEEEEEC--CCCEEEEECCHHHHHHHHHHHHHC
Q ss_conf 862532600007--987899824175888978678622
Q gi|254780771|r 303 IASKSGVLKDIP--AGQQYGGMPARPIGEYLRHMVMLS 338 (347)
Q Consensus 303 i~a~s~v~~~v~--~~~~~~G~pa~~~~~~~~~~~~~~ 338 (347)
-+++- +| |...| +...-|+|++..++
T Consensus 306 ygggi-----~Pa~~~~~w-----~k~~a~~~~l~~~~ 333 (336)
T TIGR01853 306 YGGGI-----IPAMPQKEW-----LKIAAKLKRLPELR 333 (336)
T ss_pred CCEEE-----CCCCHHHHH-----HHHHHHHHHCHHHH
T ss_conf 10011-----141202478-----99999987142553
No 15
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.97 E-value=1.5e-31 Score=189.89 Aligned_cols=162 Identities=33% Similarity=0.473 Sum_probs=134.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEE-------------
Q ss_conf 6543331001565323344200001100112320331122100000002332100233220233100-------------
Q gi|254780771|r 115 FEGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYS------------- 181 (347)
Q Consensus 115 ~~~~I~~~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~------------- 181 (347)
....|.|.++|+++++|++++.|+++|+|+++|+||+||.|+++++|++++.||++|.|+++++|..
T Consensus 115 ~~v~Igp~~vIg~~v~IG~~~~I~~~~~Ig~~v~IG~~~~I~~nv~I~~~~~IG~~~~I~~g~vIG~dGFGf~~~~~~~~ 194 (343)
T PRK00892 115 KSVSIGPNAVIGAGVEIGDGVIIGAGAVIGAGVKIGDDCRLHANVTIYHRVQIGNRVLIHSGAVIGQDGFGFAPDRGGWV 194 (343)
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEECCCEECCCEEECCCCEECCCCEECCCCCCCCCCCCCEE
T ss_conf 99889999899999899999999298199588188899588118566255588887564688622366754136799404
Q ss_pred -------EEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -------2442010000023213445433556665311044432000024444544443322222211111222111234
Q gi|254780771|r 182 -------SLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQ 254 (347)
Q Consensus 182 -------~iIG~~~~I~~~~vIG~~GFgf~~~~~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~v~ 254 (347)
-+|||+|.|++|++|-.-- ++.++||+++.|...+-|. -+++||++|.|-+++-
T Consensus 195 kip~~G~V~I~d~veIgan~tIdrg~---------------~~~T~Ig~~~kidn~vhIa----Hn~~IG~~~iia~~~g 255 (343)
T PRK00892 195 KIPQLGRVIIGDDVEIGANTTIDRGA---------------LDDTVIGEGVKIDNLVQIA----HNVRIGRHCAIAAQVG 255 (343)
T ss_pred ECCCCCEEEECCCCEECCCCEECCCC---------------CCCCEECCCCEEEEEEEEC----CCCEECCCCEEEECCE
T ss_conf 64643249988986888873272366---------------7797889896592111761----6747878838852114
Q ss_pred CCCCCCCCCCEEEEEEEEEECCCEECCCCEEEECCEEECCE
Q ss_conf 44465035771886555650363656972973068783785
Q gi|254780771|r 255 IGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYL 295 (347)
Q Consensus 255 i~hn~~iG~~~~~~~~~~~~g~~~ig~~~~ig~~~~i~~~v 295 (347)
||--|.||++|+|.+|++++++++|||++++++++++...+
T Consensus 256 iaGs~~igd~v~igG~~gi~~h~~Ig~~~~i~~~sgv~~di 296 (343)
T PRK00892 256 IAGSTKIGRYCMIGGQVGIAGHLEIGDGVQITAMSGVMKSI 296 (343)
T ss_pred EEEEEEECCCEEECCCCCCCCCCEECCCCEEEECCEECCCC
T ss_conf 70057999914994413234886989997990065143646
No 16
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.97 E-value=3.5e-30 Score=182.50 Aligned_cols=119 Identities=31% Similarity=0.482 Sum_probs=90.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCC
Q ss_conf 55765433310015653233442000011001123203311221000000023321002332202331002442010000
Q gi|254780771|r 112 ASSFEGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILH 191 (347)
Q Consensus 112 ~~~~~~~I~~~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~ 191 (347)
...+...|||+|.|+++++|++++.|+|+|+|+++++||++|.|.++|+|+++++|
T Consensus 83 ~~~f~~lIhp~a~i~~~~~ig~G~~I~~~~~i~~~~~IG~~~~i~~~~~I~Hd~~i------------------------ 138 (201)
T TIGR03570 83 GYRFATLIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVI------------------------ 138 (201)
T ss_pred CCEEEEEECCCCEECCCCEECCCCEEECCCEECCCCEEEEEEEECCCCCCCCCCEE------------------------
T ss_conf 99678999998098898678799899628698766478026798042321442547------------------------
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 02321344543355666531104443200002444454444332222221111122211123444465035771886555
Q gi|254780771|r 192 SGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQV 271 (347)
Q Consensus 192 ~~~vIG~~GFgf~~~~~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~v~i~hn~~iG~~~~~~~~~ 271 (347)
|++|.++.++
T Consensus 139 ----------------------------------------------------------------------g~~~~i~~~~ 148 (201)
T TIGR03570 139 ----------------------------------------------------------------------GDYVHIAPGV 148 (201)
T ss_pred ----------------------------------------------------------------------CCCCEECCCC
T ss_conf ----------------------------------------------------------------------7876899985
Q ss_pred EEECCCEECCCCEEEECCEEECCEEECCCCEECCCCEEEEEECCCCEEEEECC
Q ss_conf 65036365697297306878378598888898625326000079878998241
Q gi|254780771|r 272 GIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPA 324 (347)
Q Consensus 272 ~~~g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~v~~~~~~~G~pa 324 (347)
.++|.++||++|+||.++++.++++||++++|+|||+|+||+|++++|.|+||
T Consensus 149 ~i~G~v~Ig~~~~iG~~~~i~~~i~Ig~~~~Igags~V~~~v~~~~~~~G~PA 201 (201)
T TIGR03570 149 TLSGGVVIGEGVFIGAGATIIQGVTIGAGAIVGAGAVVTKDIPDGGVVVGVPA 201 (201)
T ss_pred EECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEECCCCCCCEEEEECC
T ss_conf 99898879777359898898899899999999979889043799979997587
No 17
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.97 E-value=9.4e-31 Score=185.59 Aligned_cols=167 Identities=34% Similarity=0.458 Sum_probs=135.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEE-----------
Q ss_conf 765433310015653233442000011001123203311221000000023321002332202331002-----------
Q gi|254780771|r 114 SFEGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSS----------- 182 (347)
Q Consensus 114 ~~~~~I~~~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~----------- 182 (347)
.....|.|.++|.+++.|++++.|+|+++|++++.||++|.|+++++|++++.||++|.|+++++|...
T Consensus 115 ~~~~~ig~~vvI~~~v~IG~~~~I~~~avIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~~~~g~ 194 (338)
T COG1044 115 GKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIGW 194 (338)
T ss_pred CCCCCCCCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEECCCEECCCEEECCCCEECCCCCCCCCCCCCC
T ss_conf 77873288749888978789858988978888968888858847878952757878228889988756852122466885
Q ss_pred ---------EEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf ---------44201000002321344543355666531104443200002444454444332222221111122211123
Q gi|254780771|r 183 ---------LIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQV 253 (347)
Q Consensus 183 ---------iIG~~~~I~~~~vIG~~GFgf~~~~~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~v 253 (347)
+|||+|.|++++.|...- ++.++|+++|.|..-+-|.+ +.+||++|.++.+|
T Consensus 195 ~Ki~q~g~V~Igd~VeIGanT~Idrga---------------~~dTvIg~~~kIdN~vqIaH----nv~IG~~~~I~~~v 255 (338)
T COG1044 195 VKIPQIGRVIIGDDVEIGANTTIDRGA---------------LDDTVIGEGVKIDNLVQIGH----NVRIGEHCIIAGQV 255 (338)
T ss_pred EECCEECEEEECCCEEECCCCEECCCC---------------CCCCEECCCCEECCEEEECC----CCEECCCCEEECCC
T ss_conf 671260659979824873552425655---------------56726537848764307815----52788883770263
Q ss_pred CCCCCCCCCCCEEEEEEEEEECCCEECCCCEEEECCEEECCEEECC
Q ss_conf 4444650357718865556503636569729730687837859888
Q gi|254780771|r 254 QIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGD 299 (347)
Q Consensus 254 ~i~hn~~iG~~~~~~~~~~~~g~~~ig~~~~ig~~~~i~~~v~ig~ 299 (347)
.|+--+.||++|+|..+++++|+..|+|+++|++++++...++-+.
T Consensus 256 gIaGs~~IG~~v~igg~vgI~gh~~IgD~~~I~~~~~v~~~i~~~~ 301 (338)
T COG1044 256 GIAGSVKIGKYVIIGGQVGIAGHLEIGDGVTIGARSGVMASITEPG 301 (338)
T ss_pred EEECCCEECCEEEECCCEEECCCEEECCCCEEECCCCCCCCCCCCC
T ss_conf 1613535778079876134648418757878804524312357886
No 18
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.96 E-value=2.6e-30 Score=183.19 Aligned_cols=160 Identities=21% Similarity=0.266 Sum_probs=131.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEE
Q ss_conf 65433310015653233442000011001123203311221000000023321002332202331002442010000023
Q gi|254780771|r 115 FEGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGV 194 (347)
Q Consensus 115 ~~~~I~~~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~ 194 (347)
.+..|||.|+|++.++|++++.|+|+++|+.++.||++|.|+++|+|++++.||++|+|++++.|.+++|++++.++..+
T Consensus 4 ~~~~I~p~a~I~~~v~Ig~~a~I~~~a~I~~~v~IG~~~~Ig~~~~I~~~~~IG~~~~IG~~~~I~~~vi~~~~~i~~~~ 83 (163)
T cd05636 4 IEGTVEEGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLN 83 (163)
T ss_pred EEEEECCCCEECCCEEECCCCEECCCCEEECCEEECCCCEEEECCCCCCCEEECCEEEECCCEEECCCCCCCCCCCCCCC
T ss_conf 26799999999898199999999999999797599899899364122698586130120551242124014784327756
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEE
Q ss_conf 21344543355666531104443200002444454444332222221111122211123444465035771886555650
Q gi|254780771|r 195 RIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIA 274 (347)
Q Consensus 195 vIG~~GFgf~~~~~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~v~i~hn~~iG~~~~~~~~~~~~ 274 (347)
.+ |..+||++|+||++++++...+++. .+++.++..+.+.... . .
T Consensus 84 ~i--------------------g~siIG~~v~IGagtvi~n~~~~~~----------~~~v~~~~~~~~~~~~----~-~ 128 (163)
T cd05636 84 YV--------------------GDSVLGENVNLGAGTITANLRFDDK----------PVKVRLKGERVDTGRR----K-L 128 (163)
T ss_pred EE--------------------CCCEECCCCEECCCEEEECCCCCCC----------CEEEEECCEEECCCCE----E-C
T ss_conf 87--------------------7729929969889837817767886----------3478407706236770----4-0
Q ss_pred CCCEECCCCEEEECCEEECCEEECCCCEECCCCEEE
Q ss_conf 363656972973068783785988888986253260
Q gi|254780771|r 275 GSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVL 310 (347)
Q Consensus 275 g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~ 310 (347)
.++|||+|+||.++.+.++++||++|+|+|||+|.
T Consensus 129 -G~vIGd~~~IG~ns~I~~G~~IG~~a~IgaGsvVr 163 (163)
T cd05636 129 -GAIIGDGVKTGINVSLNPGVKIGPGSWVYPGCVVR 163 (163)
T ss_pred -CCEECCCCEECCCCEECCCEEECCCCEECCCCEEC
T ss_conf -77977997999898986995999998999997969
No 19
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.96 E-value=6.2e-30 Score=181.15 Aligned_cols=160 Identities=23% Similarity=0.253 Sum_probs=102.2
Q ss_pred CCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 33442000011001123203311221000000023321002332202331002442010000023213445433556665
Q gi|254780771|r 130 KIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSD 209 (347)
Q Consensus 130 ~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vIG~~GFgf~~~~~~ 209 (347)
.+++...|+|.|.|. ++++|++|.|+++|.|. +++||++++|++++.|.++.||..|.|.+++.||.. .-+. .
T Consensus 4 ~l~~~p~Ihp~a~i~-~~~lG~~v~Ig~~~~i~-ns~IGDySyI~~~~~I~n~~IGkfcsIa~~v~I~~~---nHp~--~ 76 (204)
T TIGR03308 4 LLSPEPTLHPTAELT-ESKLGRYTEIGERTRLR-EVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINAT---NHPM--E 76 (204)
T ss_pred CCCCCCEECCCCEEC-CCCCCCCEEECCCCEEE-CCEECCCCEECCCCEEECCEECCCCEECCCCEECCC---CCCC--C
T ss_conf 347997689998683-27837833999995883-379999858889975988869998488898798987---7876--6
Q ss_pred CCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEECCCCEEEECC
Q ss_conf 31104443200002444454444332222221111122211123444465035771886555650363656972973068
Q gi|254780771|r 210 IHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQC 289 (347)
Q Consensus 210 ~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~v~i~hn~~iG~~~~~~~~~~~~g~~~ig~~~~ig~~~ 289 (347)
+....|. +..++. ..+.+. .+ .+..+. --...++||++||||.++
T Consensus 77 ~~s~~~f--~y~~~~-------~~~~~~-~~-----~~~~~~--------------------~~~~~~~Ig~dvwiG~~~ 121 (204)
T TIGR03308 77 RPTLHHF--TYRAAM-------YFDDAS-DD-----ADFFAW--------------------RRAKRVTIGHDVWIGHGA 121 (204)
T ss_pred CCEECCE--EEECCC-------CCCCCC-CC-----HHHHCC--------------------CCCCCEEECCCCEECCCC
T ss_conf 7267777--553753-------346666-61-----223213--------------------347870989976887998
Q ss_pred EEECCEEECCCCEECCCCEEEEEECCCCEEEEECCHHHHHHH
Q ss_conf 783785988888986253260000798789982417588897
Q gi|254780771|r 290 GIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPIGEYL 331 (347)
Q Consensus 290 ~i~~~v~ig~~~~i~a~s~v~~~v~~~~~~~G~pa~~~~~~~ 331 (347)
.|+++++||++|+|||||+|||||||+++|+|+|||.+|...
T Consensus 122 ~i~~gv~IG~gavigagsvVtkdv~~~~iv~G~PAk~ir~RF 163 (204)
T TIGR03308 122 VILPGVTIGNGAVIAAGAVVTKDVAPYTIVAGVPAKLIRRRF 163 (204)
T ss_pred EECCCCEECCCCEECCCCEECCCCCCCEEEEECCCEEEECCC
T ss_conf 991997999998997799899517998499841885663109
No 20
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.96 E-value=1.7e-29 Score=178.80 Aligned_cols=66 Identities=33% Similarity=0.393 Sum_probs=55.5
Q ss_pred CEECCCCEEEECCEEECCEEECCCCEECCCCEEE--EEECCCCEEEEECCHHHHHHHH-HHHHHCCHHH
Q ss_conf 3656972973068783785988888986253260--0007987899824175888978-6786228267
Q gi|254780771|r 277 TYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVL--KDIPAGQQYGGMPARPIGEYLR-HMVMLSKPSK 342 (347)
Q Consensus 277 ~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~--~~v~~~~~~~G~pa~~~~~~~~-~~~~~~~l~~ 342 (347)
++|||+||||.++.++++++||++|+|+|||+|+ +|+|++++|.|+|||.+|+.-. +...++++.+
T Consensus 78 ~~Ig~~~~IG~~a~I~~gv~IG~~~vIgagsvV~~~~~vp~~~v~~G~PAr~ir~~~~~e~~~~~~~~~ 146 (153)
T cd04645 78 CTIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPPGKVIPPGSLVAGSPAKVVRELTDEEIAELRESAE 146 (153)
T ss_pred EEEEEEEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEECCCEEECCCCHHHHHHHHHHHH
T ss_conf 187300477054398569998899799449897489796998599962837971599999999999999
No 21
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.96 E-value=1.5e-29 Score=179.02 Aligned_cols=66 Identities=24% Similarity=0.298 Sum_probs=58.0
Q ss_pred CEECCCCEEEECCEEECCEEECCCCEECCCCEEEE--EECCCCEEEEECCHHHHHH-HHHHHHHCCHHH
Q ss_conf 36569729730687837859888889862532600--0079878998241758889-786786228267
Q gi|254780771|r 277 TYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLK--DIPAGQQYGGMPARPIGEY-LRHMVMLSKPSK 342 (347)
Q Consensus 277 ~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~--~v~~~~~~~G~pa~~~~~~-~~~~~~~~~l~~ 342 (347)
++||++||||.++.++++++||++++|+|+|+|++ ++|++++|+|+|||.+|+. -.+..++++..+
T Consensus 79 ~~Ig~~~~IG~~a~I~~G~~IG~~siIgagSvV~~~~~VP~~~l~~GnPAk~ir~l~~~e~~~~~~~~~ 147 (155)
T cd04745 79 CTIGRNALVGMNAVVMDGAVIGEESIVGAMAFVKAGTVIPPRSLIAGSPAKVIRELSDEEVAWKTRGTK 147 (155)
T ss_pred CEEEEEEEECCCCEEECCCEECCCCEEEECCEECCCCCCCCCEEEEEECCEEEECCCHHHHHHHHHHHH
T ss_conf 177432497687599597798999799418787699683799899972867974399999999999999
No 22
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.96 E-value=2.4e-29 Score=177.98 Aligned_cols=66 Identities=26% Similarity=0.376 Sum_probs=56.0
Q ss_pred CEECCCCEEEECCEEECCEEECCCCEECCCCEEE--EEECCCCEEEEECCHHHHHHH-HHHHHHCCHHH
Q ss_conf 3656972973068783785988888986253260--000798789982417588897-86786228267
Q gi|254780771|r 277 TYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVL--KDIPAGQQYGGMPARPIGEYL-RHMVMLSKPSK 342 (347)
Q Consensus 277 ~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~--~~v~~~~~~~G~pa~~~~~~~-~~~~~~~~l~~ 342 (347)
++|||+||||.++.|+++++||++++|+|||+|+ +|+|++++|+|+|||.+|+.- ++..++++..+
T Consensus 79 ~~Ig~~v~IG~~a~I~~Gv~IG~~svIgaGsVV~~~~~Vp~~~lv~G~PAr~ir~l~~~~~~~~~~~~~ 147 (154)
T cd04650 79 AKVGNYVIVGMGAILLNGAKIGDHVIIGAGAVVTPGKEIPDYSLVLGVPAKVVRKLTEEEIEWIKKNAE 147 (154)
T ss_pred CEECCEEEECCCEEEECCCEECCCCEECCCCEECCCCEECCCCEEEECCEEEEEECCHHHHHHHHHHHH
T ss_conf 022013598872299628798999799889888799791998499961818977299999999999999
No 23
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.96 E-value=4.3e-29 Score=176.59 Aligned_cols=117 Identities=32% Similarity=0.475 Sum_probs=89.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCE
Q ss_conf 57654333100156532334420000110011232033112210000000233210023322023310024420100000
Q gi|254780771|r 113 SSFEGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHS 192 (347)
Q Consensus 113 ~~~~~~I~~~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~ 192 (347)
..+...|||+|.++++++|++++.|.|+++|+++++||++|.|.+++.|+++++||++
T Consensus 81 ~~~~niIhp~a~i~~~~~ig~G~~I~~~~~i~~~~~IG~~~~i~~~~~i~Hd~~ig~~---------------------- 138 (197)
T cd03360 81 YRFATLIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDF---------------------- 138 (197)
T ss_pred CEEEEEECCCCEECCCCEECCCCEEECCCEECCCCCCCCEEEECCCHHCCCCCCCCCC----------------------
T ss_conf 9678999999598777479994299317598656530436898770010531501310----------------------
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf 23213445433556665311044432000024444544443322222211111222111234444650357718865556
Q gi|254780771|r 193 GVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVG 272 (347)
Q Consensus 193 ~~vIG~~GFgf~~~~~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~v~i~hn~~iG~~~~~~~~~~ 272 (347)
|.++.++.
T Consensus 139 ------------------------------------------------------------------------~~i~~~~~ 146 (197)
T cd03360 139 ------------------------------------------------------------------------VHIAPGVV 146 (197)
T ss_pred ------------------------------------------------------------------------CEECCCEE
T ss_conf ------------------------------------------------------------------------10667236
Q ss_pred EECCCEECCCCEEEECCEEECCEEECCCCEECCCCEEEEEECCCCEEEEEC
Q ss_conf 503636569729730687837859888889862532600007987899824
Q gi|254780771|r 273 IAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMP 323 (347)
Q Consensus 273 ~~g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~v~~~~~~~G~p 323 (347)
++|.++||++|+||.++++.++++||++++|+|||+|+||+|++++|+|+|
T Consensus 147 i~g~v~Ig~~~~iG~~~~i~~~i~Ig~~~~igags~v~~~i~~~~~~~G~P 197 (197)
T cd03360 147 LSGGVTIGEGAFIGAGATIIQGVTIGAGAIIGAGAVVTKDVPDGSVVVGNP 197 (197)
T ss_pred ECCCEEEEEECCCCCCCEECCCCEECCCCEECCCCEEEEECCCCEEEEECC
T ss_conf 778308912162989989879989999999997998912569990999309
No 24
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.95 E-value=1.7e-28 Score=173.28 Aligned_cols=129 Identities=28% Similarity=0.418 Sum_probs=95.0
Q ss_pred CCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEE-EEEEECCCCCEEEECCCCCCCCCCCCCCCCC
Q ss_conf 200001100112320331122100000002332100233220233100-2442010000023213445433556665311
Q gi|254780771|r 134 GVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYS-SLIGNSVILHSGVRIGNDGFGYARGVSDIHK 212 (347)
Q Consensus 134 ~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~-~iIG~~~~I~~~~vIG~~GFgf~~~~~~~~~ 212 (347)
++.|.|.++|.+.+.||+|++|.++++|..++.||++|.|..++++.+ +.||++|+|++|++||.
T Consensus 86 ~aRIepgaiir~~v~IG~~aVImmga~INiGA~IGegtmId~~Avvg~~a~IGk~~HisaGa~laG-------------- 151 (231)
T TIGR03532 86 NARIEPGAIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAG-------------- 151 (231)
T ss_pred CCEECCCCEEECCEEECCCEEEECCCEEECCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEC--------------
T ss_conf 835778858842529879839913888704859878945805856445468879705889864300--------------
Q ss_pred CCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEECCCCEEEECCEEE
Q ss_conf 04443200002444454444332222221111122211123444465035771886555650363656972973068783
Q gi|254780771|r 213 IVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIA 292 (347)
Q Consensus 213 ~~~~G~v~Ig~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~v~i~hn~~iG~~~~~~~~~~~~g~~~ig~~~~ig~~~~i~ 292 (347)
| ++. . -+.-|+|||+||||.++.+.
T Consensus 152 ------V-leP------------~------------------------------------~a~PViIeDnV~IGAnAvIl 176 (231)
T TIGR03532 152 ------V-IEP------------P------------------------------------SAKPVVIEDNVLIGANAVIL 176 (231)
T ss_pred ------C-CCC------------C------------------------------------CCCCEEECCCEEECCCCEEC
T ss_conf ------2-257------------6------------------------------------67997987885987997991
Q ss_pred CCEEECCCCEECCCCEEEEEECCCCEEEEECCHHHHHHH
Q ss_conf 785988888986253260000798789982417588897
Q gi|254780771|r 293 GYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPIGEYL 331 (347)
Q Consensus 293 ~~v~ig~~~~i~a~s~v~~~v~~~~~~~G~pa~~~~~~~ 331 (347)
++++||++++|+|||+|++|+|++++|+|+|||.+|+.-
T Consensus 177 ~GV~IG~gsVIgAGsVVtkdVP~~sVVaG~PAKIIK~vD 215 (231)
T TIGR03532 177 EGVRVGKGAVVAAGAIVTEDVPPNTVVAGVPAKVIKQVD 215 (231)
T ss_pred CCCEECCCCEECCCCEECCCCCCCCEEEECCEEEEEECC
T ss_conf 998999999998498895657999799854819998557
No 25
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.95 E-value=5.3e-28 Score=170.66 Aligned_cols=171 Identities=36% Similarity=0.520 Sum_probs=140.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEE-------------
Q ss_conf 6543331001565323344200001100112320331122100000002332100233220233100-------------
Q gi|254780771|r 115 FEGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYS------------- 181 (347)
Q Consensus 115 ~~~~I~~~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~------------- 181 (347)
....|||+|+|+++++|++++.|+|+++|+++++||++|.|+++++|++++.||++|.|+++++|..
T Consensus 6 ~~v~I~~~avI~~~v~Ig~n~~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~~f~~~~~~~~~~ 85 (205)
T cd03352 6 ENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGGWV 85 (205)
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEECCCEECCCCEECCEEEECCCEEECCCCCCCCCCCCCCE
T ss_conf 99999998799999999999999898899999688988366003447278687544777153486213532314798404
Q ss_pred -------EEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -------2442010000023213445433556665311044432000024444544443322222211111222111234
Q gi|254780771|r 182 -------SLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQ 254 (347)
Q Consensus 182 -------~iIG~~~~I~~~~vIG~~GFgf~~~~~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~v~ 254 (347)
..||++|.|++++.|-. | . .+.++|||++.+...+.|. .++.||+++.+-+.+.
T Consensus 86 ~~~~~g~v~Ig~~v~Ig~~~~I~~-g--------~------~~~T~IG~~~~i~~~v~ig----h~~~iG~~~~i~~~~~ 146 (205)
T cd03352 86 KIPQLGGVIIGDDVEIGANTTIDR-G--------A------LGDTVIGDGTKIDNLVQIA----HNVRIGENCLIAAQVG 146 (205)
T ss_pred ECCCCCCEEECCCEEECCCCEECC-C--------C------CCCCCCCCCCEECCCCCCC----CCCCCCCCEEECCCCC
T ss_conf 514213189848849888627636-6--------4------2677478776864545255----6404158707503200
Q ss_pred CCCCCCCCCCEEEEEEEEEECCCEECCCCEEEECCEEECCEEECCCCEECCC
Q ss_conf 4446503577188655565036365697297306878378598888898625
Q gi|254780771|r 255 IGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASK 306 (347)
Q Consensus 255 i~hn~~iG~~~~~~~~~~~~g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~ 306 (347)
++-.|.||+++++.+.+.+...++||+++++|+++.+... +.+++++.+.
T Consensus 147 ~~g~~~Igd~~~iG~~s~i~~gv~IG~~a~VgagSvVtkd--Vp~~~iv~G~ 196 (205)
T cd03352 147 IAGSTTIGDNVIIGGQVGIAGHLTIGDGVVIGAGSGVTSI--VPPGEYVSGT 196 (205)
T ss_pred CCCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCC--CCCCCEEEEE
T ss_conf 0265249743539896488299399999899868879648--6999699976
No 26
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.94 E-value=6.3e-27 Score=164.83 Aligned_cols=207 Identities=24% Similarity=0.282 Sum_probs=159.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEE-------EEEEEEE
Q ss_conf 765433310015653233442000011001123203311221000000023321002332202331-------0024420
Q gi|254780771|r 114 SFEGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSI-------YSSLIGN 186 (347)
Q Consensus 114 ~~~~~I~~~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I-------~~~iIG~ 186 (347)
.+.+.|+|+|.|++++.|++.++|++++.|++++.|+.+++|..++.|+++++|+.+++|+....- ...+||+
T Consensus 3 HptAiI~~~A~IG~~v~Igp~~vIg~~V~IG~~~~I~~~v~I~~~t~IG~~~~I~~~avIG~~pqd~~~~g~~~~v~IG~ 82 (254)
T cd03351 3 HPTAIVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGD 82 (254)
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCEEECCCCCCCCCCCCCCCCCCCCEEEECC
T ss_conf 89779699899999799999989999999999999979968919979776525605753477876767379867699799
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 10000023213445433556665311044432000024444544443322222211111222111234444650357718
Q gi|254780771|r 187 SVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCI 266 (347)
Q Consensus 187 ~~~I~~~~vIG~~GFgf~~~~~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~v~i~hn~~iG~~~~ 266 (347)
++.|+++++|..- ...+ -|.++|||++.|.+++-|.. |+.||+++.+.|.+.+|-.|+||++++
T Consensus 83 ~~~Ire~vtI~rg-----t~~~-------~~~T~IG~~~~im~~~HIaH----dc~IG~~~iian~~~laGhv~Igd~a~ 146 (254)
T cd03351 83 NNTIREFVTIHRG-----TAQG-------GGVTRIGNNNLLMAYVHVAH----DCVIGNNVILANNATLAGHVEIGDYAI 146 (254)
T ss_pred CCEECCCCCCCCC-----CCCC-------CCCEEECCCCEEEECCCCCC----CCCCCCCEEEECCCCCCCCEEECCCCE
T ss_conf 7789953302367-----4378-------87559788857820254456----773379759933445568569899848
Q ss_pred EEEEEEEECCCEECCCCEEEECCEEECCEEECCCCEECCCCEEEEEEC-CCCEEEEECCHHHHHHHHHHHHHC
Q ss_conf 865556503636569729730687837859888889862532600007-987899824175888978678622
Q gi|254780771|r 267 IVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIP-AGQQYGGMPARPIGEYLRHMVMLS 338 (347)
Q Consensus 267 ~~~~~~~~g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~v~-~~~~~~G~pa~~~~~~~~~~~~~~ 338 (347)
+.+++++...++||+++++|+++.+... |.+++++.+.-.-.+-+- -+-.-.|.....+++.++.+..|-
T Consensus 147 IGg~~~v~q~v~IG~~a~Igags~V~kD--Vpp~~~v~G~PA~~~glN~vGl~R~g~~~~~i~~i~~ayr~l~ 217 (254)
T cd03351 147 IGGLSAVHQFCRIGRHAMVGGGSGVVQD--VPPYVIAAGNRARLRGLNLVGLKRRGFSREEIRALKRAYRILY 217 (254)
T ss_pred ECCCCEECCCCEECCCEEECCCCEEECC--CCCCCEECCCCCEEEEEEHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 9883677598199966199767456113--6987265179657872148988677999999999999999996
No 27
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.94 E-value=1.3e-26 Score=163.09 Aligned_cols=209 Identities=23% Similarity=0.292 Sum_probs=159.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEE-------EEEEE
Q ss_conf 55765433310015653233442000011001123203311221000000023321002332202331-------00244
Q gi|254780771|r 112 ASSFEGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSI-------YSSLI 184 (347)
Q Consensus 112 ~~~~~~~I~~~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I-------~~~iI 184 (347)
...+.+.|+|+|.|++++.|++.++|++++.|++++.|+.+++|..++.|+++++|..+++|+....- ..-.|
T Consensus 4 ~IHptAiI~~~A~IG~~v~Igp~~vIg~~v~IG~~~~I~~~v~I~~~t~IG~~~~I~~~avIG~~pqd~~~~g~~~~v~I 83 (261)
T PRK05289 4 KIHPTAIVEPGAEIGENVEIGPFCVIGPDVVIGDGTEIGSHVVIDGHTTIGKNNRIFPFASIGEEPQDLKYKGEPTRLVI 83 (261)
T ss_pred CCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEECCCEECCCCEECCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 40898898998999998999999999999999999999799689189888988345247533778766660698536998
Q ss_pred EECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 20100000232134454335566653110444320000244445444433222222111112221112344446503577
Q gi|254780771|r 185 GNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCG 264 (347)
Q Consensus 185 G~~~~I~~~~vIG~~GFgf~~~~~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~v~i~hn~~iG~~ 264 (347)
|+++.|++++.|..- ...+ -|.++|||++.+-+++-|.. |+.||++|.+-|++.+|-.|.||++
T Consensus 84 Gd~~~Ire~vtI~rg-----T~~~-------~g~T~IG~~~~im~~vhIaH----d~~IG~~~iian~~~laG~v~Igd~ 147 (261)
T PRK05289 84 GDNNTIREFVTINRG-----TVQG-------GGVTRIGDNNLLMAYVHVAH----DCVVGNNVILANNATLAGHVEVGDY 147 (261)
T ss_pred CCCCEECCCCEECCC-----CCCC-------CCCEEECCCCEEECCCCCCC----CCCCCCCCEECCCEEECCCEEECCC
T ss_conf 997789854144366-----1058-------86449888854400364344----5512787165430566460798897
Q ss_pred EEEEEEEEEECCCEECCCCEEEECCEEECCEEECCCCEECCCCEEEEEEC-CCCEEEEECCHHHHHHHHHHHHHC
Q ss_conf 18865556503636569729730687837859888889862532600007-987899824175888978678622
Q gi|254780771|r 265 CIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIP-AGQQYGGMPARPIGEYLRHMVMLS 338 (347)
Q Consensus 265 ~~~~~~~~~~g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~v~-~~~~~~G~pa~~~~~~~~~~~~~~ 338 (347)
+++.+++++...++||+++++|+++.+... |.+++++.+.-.-.+-+- -+-.-.|.....+++.++.+..|-
T Consensus 148 v~iGg~~~v~q~v~IG~~a~vgagS~V~kD--Vpp~~~v~G~PAr~~glN~vGL~R~g~s~~~i~~i~~ayr~l~ 220 (261)
T PRK05289 148 AIIGGLSGVHQFVRIGAHAMVGGMSAVVQD--VPPYVLAEGNPARLRGLNIVGLKRRGFSREEIHALRRAYKLLY 220 (261)
T ss_pred EEECCCCEECCCCEECCCEEECCCCEECCC--CCCCCEEECCCCEEEEEEHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 099761566488398987199976365424--7998678468356886128888677999999999999999997
No 28
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.93 E-value=1.2e-26 Score=163.30 Aligned_cols=53 Identities=28% Similarity=0.337 Sum_probs=50.4
Q ss_pred CCCEECCCCEEEECCEEECCEEECCCCEECCCCEEEEEECCCCEEEEECCHHH
Q ss_conf 36365697297306878378598888898625326000079878998241758
Q gi|254780771|r 275 GSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPI 327 (347)
Q Consensus 275 g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~v~~~~~~~G~pa~~~ 327 (347)
+.++|||+||||.++.++++++||++++|+|+|+|+||+|++++|+|+|||.+
T Consensus 66 ~~v~Ig~~v~IG~~~~I~~gv~IG~~~~IgagSvV~~dv~~~~i~~G~PAk~I 118 (119)
T cd03358 66 KGTTVKRGASIGANATILPGVTIGEYALVGAGAVVTKDVPPYALVVGNPARII 118 (119)
T ss_pred CCCEECCCEEECCCCEEECCEEECCCCEECCCCEECCCCCCCCEEEEECCEEE
T ss_conf 48398788384887477899498999899779989036599979997497991
No 29
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.93 E-value=5e-26 Score=159.96 Aligned_cols=48 Identities=21% Similarity=0.257 Sum_probs=30.1
Q ss_pred CCCCCCCCEEEEEEEEEECCCEECCCCEEEECCEEECCEEECCCCEECCC
Q ss_conf 46503577188655565036365697297306878378598888898625
Q gi|254780771|r 257 HNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASK 306 (347)
Q Consensus 257 hn~~iG~~~~~~~~~~~~g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~ 306 (347)
|.+.||++|+|.+++++.++++||+++++|+++.+... |.+++++-++
T Consensus 143 ~~t~IGd~v~IG~~~~i~~~v~IG~~a~Igags~V~kd--Vpp~~lvvg~ 190 (193)
T cd03353 143 HRTVIGDNVFIGSNSQLVAPVTIGDGATIAAGSTITKD--VPPGALAIAR 190 (193)
T ss_pred CCCEECCCCEECCCCEEECCEEECCCCEECCCCEECCC--CCCCCEEEEE
T ss_conf 62343356189889879898399999899869888842--3999789962
No 30
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.93 E-value=8.3e-26 Score=158.77 Aligned_cols=207 Identities=22% Similarity=0.235 Sum_probs=158.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEE-------EEEEEE
Q ss_conf 5765433310015653233442000011001123203311221000000023321002332202331-------002442
Q gi|254780771|r 113 SSFEGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSI-------YSSLIG 185 (347)
Q Consensus 113 ~~~~~~I~~~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I-------~~~iIG 185 (347)
..+.+.|+|+|.|+++++|++.++|++++.|+++++|+.+++|++++.|++++.|..+++|+....- ...+||
T Consensus 3 IHptAiI~~~A~Ig~~v~Igp~~vIg~~V~IG~~~~I~~~v~I~~~t~IG~~~~I~~~avIG~~pqd~~~~g~~~~v~IG 82 (256)
T PRK12461 3 IHPTAVIDPSAKLGEGVEIGPFAVIGADVEIGDGTWIMPHAVILGWTRIGKNNKIHQGAVVGDEPQDFGYKGEESHLIIG 82 (256)
T ss_pred CCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCEEEEECCCCCCCCCCCCCCCCCCEEEEC
T ss_conf 99987989989999999999999999999999999994981891998999743997543117633344415862069989
Q ss_pred ECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 01000002321344543355666531104443200002444454444332222221111122211123444465035771
Q gi|254780771|r 186 NSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGC 265 (347)
Q Consensus 186 ~~~~I~~~~vIG~~GFgf~~~~~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~v~i~hn~~iG~~~ 265 (347)
+++.|+++++|-.- ... -+.+.||+++.+-+++-|. -|+.||++|.+-|++.+|-.|.||+++
T Consensus 83 d~~~Ire~~tI~rg---------t~~----~~~T~IG~~~~im~~vhIa----Hd~~IG~~~iian~~~laG~v~Igd~v 145 (256)
T PRK12461 83 DNNVIREGVTIHRG---------TKG----GTVTRIGNDNLLMANSHIA----HDCQIGNNVILVNGALLAGHVTVGDRA 145 (256)
T ss_pred CCCEECCCCCCCCC---------CCC----CCCEEECCCCEEECCCCCC----CCCCCCCCEEEECCEEECCCEEECCCC
T ss_conf 98787987556786---------148----9866988785874364334----643136770672220232425999972
Q ss_pred EEEEEEEEECCCEECCCCEEEECCEEECCEEECCCCEECCCCEEEEEEC-CCCEEEEECCHHHHHHHHHHHHHC
Q ss_conf 8865556503636569729730687837859888889862532600007-987899824175888978678622
Q gi|254780771|r 266 IIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIP-AGQQYGGMPARPIGEYLRHMVMLS 338 (347)
Q Consensus 266 ~~~~~~~~~g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~v~-~~~~~~G~pa~~~~~~~~~~~~~~ 338 (347)
++.+++++.+.++||+++++|+++.+... |.+++++.+.-.-.+-+- -+-.-.|.+...++..++.+..+-
T Consensus 146 ~iGg~~~v~q~v~IG~~a~Ig~gS~V~kD--VPp~~~v~G~pA~~~glN~vGl~R~gf~~~~i~~i~~ay~~l~ 217 (256)
T PRK12461 146 IISGNCLVHQFCRIGRLAMMAGGSRISKD--VPPYCMMAGNTTNVHGLNAVGLRRNGFSSRAIRALKRAYKIIY 217 (256)
T ss_pred EECCCCEECCCCEECCCCEECCCCEEEEE--CCCCEEEECCCCEEEECHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99573477179799999699878577753--7998388268776540104404528989999999999999997
No 31
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.93 E-value=2.2e-26 Score=161.90 Aligned_cols=55 Identities=27% Similarity=0.255 Sum_probs=50.4
Q ss_pred CEECCCCEEEECCEEECCEEECCCCEECCCCEEEE--EECCCCEEEEECCHHHHHHH
Q ss_conf 36569729730687837859888889862532600--00798789982417588897
Q gi|254780771|r 277 TYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLK--DIPAGQQYGGMPARPIGEYL 331 (347)
Q Consensus 277 ~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~--~v~~~~~~~G~pa~~~~~~~ 331 (347)
++|||+|+||.++.|+++.+||++++|+|||+|+. .+|++++|+|+|||.+|+--
T Consensus 89 c~Igd~~lIGmgavVldga~Ig~~~iI~AgslV~~g~~ip~~~L~~G~PAk~vR~lt 145 (196)
T PRK13627 89 CVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEKRQLLMGTPARAVRSVS 145 (196)
T ss_pred EEEECCCEECCCCEEECCCEECCCCEECCCCEECCCCCCCCCCEEEECCEEEEECCC
T ss_conf 499489788469799288899999899768645799493898199877816811499
No 32
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; InterPro: IPR010137 This entry describes LpxA, an enzyme for the biosynthesis of lipid A, a component of lipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat.; GO: 0008780 acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity, 0008610 lipid biosynthetic process.
Probab=99.92 E-value=2.4e-25 Score=156.23 Aligned_cols=206 Identities=22% Similarity=0.309 Sum_probs=145.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEE--E-----EEEEEE
Q ss_conf 765433310015653233442000011001123203311221000000023321002332202331--0-----024420
Q gi|254780771|r 114 SFEGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSI--Y-----SSLIGN 186 (347)
Q Consensus 114 ~~~~~I~~~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I--~-----~~iIG~ 186 (347)
.+.+.|+|.|.|+++++||+-+.|++++.|+++|+|+.+|+|.-.+.||.|++|-.++.||.--.- + .-+||+
T Consensus 2 HPTA~ie~gA~iG~~V~iGPf~~v~~~V~ig~g~~l~shV~i~G~T~iG~~~~i~p~A~iG~~PQdlky~GE~t~l~IG~ 81 (257)
T TIGR01852 2 HPTAIIEPGAEIGEDVEIGPFCIVGPGVKIGDGVELKSHVVIEGHTTIGEGTKIFPGAVIGGEPQDLKYKGERTELIIGD 81 (257)
T ss_pred CCCEEECCCCEECCCCEEEEEEEECCCCEECCCCEECCCEEEECCEEECCCCEEECCEEECCCCCCCEECCCCCEEEECC
T ss_conf 96218788668289857801888789758868858757368967708789988807607679885650148701799889
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 10000023213445433556665311044432000024444544443322222211111222111234444650357718
Q gi|254780771|r 187 SVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCI 266 (347)
Q Consensus 187 ~~~I~~~~vIG~~GFgf~~~~~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~v~i~hn~~iG~~~~ 266 (347)
||+|..+++|-. ... +.-|.+.||||+.+-|.|=|. -|++||+++.|-|.+++|=-|.||++++
T Consensus 82 ~n~IRE~VTi~~--------GT~----~g~g~T~iG~~nllMAysHvA----HDC~vGn~vv~aN~a~LAGHV~vgD~a~ 145 (257)
T TIGR01852 82 NNTIREFVTINR--------GTK----SGGGVTSIGNNNLLMAYSHVA----HDCVVGNHVVLANNATLAGHVEVGDYAI 145 (257)
T ss_pred CCEEEEEEEECC--------CCC----CCCCEEEECCCCEECCCCEEE----ECCEECCEEEEECCCEECEEEEECCEEE
T ss_conf 656975578506--------625----888889988876572053561----2436888169813631222799888999
Q ss_pred EEEEEEEECCCEECCCCEEEECCEEECCEEECCCCEECCC-CEEEEEEC-CCCEEEEECCHHHHHHHHHHHHH
Q ss_conf 8655565036365697297306878378598888898625-32600007-98789982417588897867862
Q gi|254780771|r 267 IVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASK-SGVLKDIP-AGQQYGGMPARPIGEYLRHMVML 337 (347)
Q Consensus 267 ~~~~~~~~g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~-s~v~~~v~-~~~~~~G~pa~~~~~~~~~~~~~ 337 (347)
|.+.+.+=--|+||++|||||.|.|..- |-.++++.+. -....-+- -|-.=.|.+.+.+..-+|-+..|
T Consensus 146 iGG~~avHQFvRIG~~aMigG~s~v~~D--vpPY~~~~G~~~a~l~GlN~vGLrR~Gf~~~~i~~i~~ayr~l 216 (257)
T TIGR01852 146 IGGLVAVHQFVRIGRYAMIGGLSAVSKD--VPPYGLVEGNSRAVLRGLNIVGLRRRGFDREEITAIKKAYRLL 216 (257)
T ss_pred ECCCCCEEEEEEEHHHHHHHHHCCCCCC--CCCCEEECCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 7789721101330002322120024678--7761786378753378870132213787989999999998876
No 33
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.91 E-value=4.3e-25 Score=154.90 Aligned_cols=118 Identities=24% Similarity=0.380 Sum_probs=78.4
Q ss_pred CCCCCCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEECC
Q ss_conf 33310015653233442000011001123203311221000000023321002332202331002442010000023213
Q gi|254780771|r 118 GISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIG 197 (347)
Q Consensus 118 ~I~~~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vIG 197 (347)
.|||.|.|.++++|++++.|+++++|+.+++||++|.|+.+++|+++++||++|.|++++++ +
T Consensus 3 rI~P~A~I~~ga~IG~g~vI~~~a~I~~g~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~g~~i-----------------~ 65 (139)
T cd03350 3 RVPPGAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVI-----------------G 65 (139)
T ss_pred EECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEE-----------------C
T ss_conf 74998298899999999899889998439898987278666602686699993289888678-----------------4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCC
Q ss_conf 44543355666531104443200002444454444332222221111122211123444465035771886555650363
Q gi|254780771|r 198 NDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGST 277 (347)
Q Consensus 198 ~~GFgf~~~~~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~v~i~hn~~iG~~~~~~~~~~~~g~~ 277 (347)
.. .+ |. . ...+
T Consensus 66 g~-----------~~-p~------------------------------~---------------------------~~~v 76 (139)
T cd03350 66 GV-----------LE-PL------------------------------Q---------------------------ATPV 76 (139)
T ss_pred CC-----------CC-CC------------------------------C---------------------------CCCC
T ss_conf 44-----------25-76------------------------------4---------------------------6886
Q ss_pred EECCCCEEEECCEEECCEEECCCCEECCCCEEEEEECCCCEEEE
Q ss_conf 65697297306878378598888898625326000079878998
Q gi|254780771|r 278 YIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGG 321 (347)
Q Consensus 278 ~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~v~~~~~~~G 321 (347)
+|+|+||||+++.+.++++||++++|||||+||||+|++.++.|
T Consensus 77 ~IeD~~~IGa~a~V~~Gv~IG~~avIGAGsVVtkdvp~y~~~~g 120 (139)
T cd03350 77 IIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQSTPIYDRETG 120 (139)
T ss_pred EECCCEEEEECCEEECCCEECCCCEECCCCEEECCCCCEEEECC
T ss_conf 88799599309989468799999899979889189884682378
No 34
>PRK10502 putative colanic acid biosynthesis acetyltransferase WcaF; Provisional
Probab=99.91 E-value=6.7e-25 Score=153.84 Aligned_cols=56 Identities=29% Similarity=0.437 Sum_probs=53.0
Q ss_pred ECCCEECCCCEEEECCEEECCEEECCCCEECCCCEEEEEECCCCEEEEECCHHHHH
Q ss_conf 03636569729730687837859888889862532600007987899824175888
Q gi|254780771|r 274 AGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPIGE 329 (347)
Q Consensus 274 ~g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~v~~~~~~~G~pa~~~~~ 329 (347)
.+.++|||+||||+++.|.++++||++++|||+|+|+||+|++++|+|+|||.+|+
T Consensus 123 ~~pI~Igd~~wIga~a~I~pGv~Ig~gavigA~SvV~kdv~~~~i~~G~PA~~ik~ 178 (179)
T PRK10502 123 AAPIVIGEGCWLATDVFVAPGVTIGDGAVVGARSSVFKSLPANTVCRGNPAVVIRQ 178 (179)
T ss_pred CCCCEECCCEEECCCCEEECCCEECCCCEECCCCEEEEECCCCCEEEECCCEEEEC
T ss_conf 48858589969999969908899999979954998921779996999318478713
No 35
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=99.91 E-value=9e-25 Score=153.16 Aligned_cols=107 Identities=34% Similarity=0.436 Sum_probs=86.4
Q ss_pred CEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCEEEEEEEEEECCCEECCCCEEEECCEEECCEEE
Q ss_conf 0000244445444433222222111112221112344-446503577188655565036365697297306878378598
Q gi|254780771|r 219 VIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQI-GHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKI 297 (347)
Q Consensus 219 v~Ig~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~v~i-~hn~~iG~~~~~~~~~~~~g~~~ig~~~~ig~~~~i~~~v~i 297 (347)
+.||++|.||++|+|+.+ +..+||++|.|+..|+| +|+..+++.+....+..+.+.++|||+||||.++.++++++|
T Consensus 2 v~IG~~~~Ig~~~~I~~~--~~i~IG~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~IG~~~~I~~gv~I 79 (109)
T cd04647 2 ISIGDNVYIGPGCVISAG--GGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPGVTI 79 (109)
T ss_pred CEECCCCEECCCCEEECC--CCEEECCCCEECCEEEEEEEEEECCCCCEECCCCCEECCEEEECCCEECCCEEEEECCEE
T ss_conf 199999899999999689--887999984993508983300132887525267637189799423578898399285130
Q ss_pred CCCCEECCCCEEEEEECCCCEEEEECCHHH
Q ss_conf 888898625326000079878998241758
Q gi|254780771|r 298 GDNVQIASKSGVLKDIPAGQQYGGMPARPI 327 (347)
Q Consensus 298 g~~~~i~a~s~v~~~v~~~~~~~G~pa~~~ 327 (347)
|++++|+|+|+|+||+|++++|.|+|||.+
T Consensus 80 g~~~iIga~SvV~k~i~~~~i~~G~PAk~i 109 (109)
T cd04647 80 GDGAVVGAGSVVTKDVPPNSIVAGNPAKVI 109 (109)
T ss_pred CCCCEECCCCEECCCCCCCCEEEEECCEEC
T ss_conf 898699379889148399989997586999
No 36
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.91 E-value=6e-25 Score=154.12 Aligned_cols=56 Identities=16% Similarity=0.148 Sum_probs=50.3
Q ss_pred CEECCCCEEEECCEEECCEEECCCCEECCCCEEEEE--ECCCCEEEEECCHHHHHHHH
Q ss_conf 365697297306878378598888898625326000--07987899824175888978
Q gi|254780771|r 277 TYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKD--IPAGQQYGGMPARPIGEYLR 332 (347)
Q Consensus 277 ~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~--v~~~~~~~G~pa~~~~~~~~ 332 (347)
++||++++||.++.++++.+||++|+|||+|+|+.+ +||+++++|+||+..+.+-+
T Consensus 84 ~~IG~~~lIg~~a~V~~ga~Ig~~ciIgags~V~~~~~ip~~slv~G~pa~~~~~~~~ 141 (164)
T cd04646 84 LKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPENTVIYGADCLRRTQTDR 141 (164)
T ss_pred CEECCCCEECCCCEECCCCEECCCCEECCCCCCCCCCEECCCEEEECCCEEEEECCCC
T ss_conf 5976788896898999998999998999898928997929985997887478121567
No 37
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=99.90 E-value=1.9e-24 Score=151.41 Aligned_cols=56 Identities=38% Similarity=0.498 Sum_probs=53.4
Q ss_pred CCCEECCCCEEEECCEEECCEEECCCCEECCCCEEEEEECCCCEEEEECCHHHHHH
Q ss_conf 36365697297306878378598888898625326000079878998241758889
Q gi|254780771|r 275 GSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPIGEY 330 (347)
Q Consensus 275 g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~v~~~~~~~G~pa~~~~~~ 330 (347)
+.++|||+||||.++.|+++++||++++|||+|+||||+||+++|+|+|||.+|+.
T Consensus 72 ~~i~Ig~~vwIG~n~~Il~GV~IG~gavIgAgSvVtkdvp~~~i~~G~PAk~ik~R 127 (145)
T cd03349 72 GDVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVTKDVPPYAIVGGNPAKVIRYR 127 (145)
T ss_pred CCEEECCCEEECCCCEEECCCEECCCCEEECCCEECCCCCCCCEEEEECCEEEECC
T ss_conf 99798899699998889588096788689289789704699949983388788155
No 38
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=99.90 E-value=3.1e-24 Score=150.26 Aligned_cols=58 Identities=31% Similarity=0.459 Sum_probs=54.6
Q ss_pred ECCCEECCCCEEEECCEEECCEEECCCCEECCCCEEEEEECCCCEEEEECCHHHHHHH
Q ss_conf 0363656972973068783785988888986253260000798789982417588897
Q gi|254780771|r 274 AGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPIGEYL 331 (347)
Q Consensus 274 ~g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~v~~~~~~~G~pa~~~~~~~ 331 (347)
.+.++|||+||||.++.|.++++||++++|||+|+|++|+|++++++|+|||.+|+|-
T Consensus 128 ~~pv~Ig~~~wIg~~~~Il~Gv~Ig~~~vvgA~SvV~~dvp~~~i~~G~PAk~Ik~~~ 185 (192)
T PRK09677 128 SSAVVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTKSIPENTVIAGNPAKIIKKYN 185 (192)
T ss_pred CCCEEECCCCEECCCCEEECCCEECCCCEECCCCEECCCCCCCEEEEEECCEEEEECC
T ss_conf 5998989998999999991996999998991699998585999199970838897127
No 39
>TIGR01173 glmU UDP-N-acetylglucosamine pyrophosphorylase; InterPro: IPR005882 N-Acetylglucosamine-1-PO(4) uridyltransferase (GlmU, 2.7.7.23 from EC) is a trimeric bifunctional enzyme that catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-GlcNAc. The X-ray crystal structure of Escherichia coli GlmU in complex with UDP-GlcNAc and CoA has been determined to 2.1 A resolution and reveals a two-domain architecture that is responsible for these two reactions . The C-terminal domain is responsible for the CoA-dependent acetylation of Glc-1-PO(4) to GlcNAc-1-PO(4) and displays the longest left-handed parallel beta-helix observed to date. The acetyltransferase active site defined by the binding site for CoA makes use of residues from all three subunits and is positioned beneath an open cavity large enough to accommodate the Glc-1-PO(4) acetyl acceptor. The N-terminal domain catalyzes uridyl transfer from UTP to GlcNAc-1-PO(4) to form the final products UDP-GlcNAc and pyrophosphate. This domain is composed of a central seven-stranded beta-sheet surrounded by six alpha-helices in a Rossmann fold-like topology. ; GO: 0003977 UDP-N-acetylglucosamine diphosphorylase activity, 0009103 lipopolysaccharide biosynthetic process.
Probab=99.89 E-value=5.5e-24 Score=148.88 Aligned_cols=164 Identities=27% Similarity=0.422 Sum_probs=121.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEE-EEEEECCCCCEEE
Q ss_conf 543331001565323344200001100112320331122100000002332100233220233100-2442010000023
Q gi|254780771|r 116 EGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYS-SLIGNSVILHSGV 194 (347)
Q Consensus 116 ~~~I~~~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~-~iIG~~~~I~~~~ 194 (347)
..-|+|...+...++||++|.|||+|+|. |+.|++++.|.|+|++. ++.||++|.|||++.+++ |+|++++.|+.++
T Consensus 277 Dv~I~~~v~leG~v~iG~~v~IGp~~~I~-ns~I~~~~~I~~~s~~e-~~~ig~~~~vGPFArLRP~~~L~~~~hiGNFV 354 (461)
T TIGR01173 277 DVVIDPNVILEGKVQIGDDVVIGPGCVIK-NSVIGSNAVIKPYSVLE-GSEIGEGCDVGPFARLRPGSVLGAGVHIGNFV 354 (461)
T ss_pred EEEECCCCEECCEEEECCCEEECCCCEEE-EEEECCCCEEEEEEECC-CCEECCCCEECCCCCCCCCCHHHCCCEEEEEE
T ss_conf 16975583883407987870788985899-72886885588888414-67861564027730018643211778160258
Q ss_pred ECCCCCCCCCCCCCCCCCCCCC---CCCEECCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 2134454335566653110444---32000024444544443322---22221111122211123444465035771886
Q gi|254780771|r 195 RIGNDGFGYARGVSDIHKIVHI---GRVIIQDKVEIGANSAIDRG---TIDDTIIGENTKIDNQVQIGHNVHIGCGCIIV 268 (347)
Q Consensus 195 vIG~~GFgf~~~~~~~~~~~~~---G~v~Ig~~v~IG~n~tIdrg---~~~~t~Ig~~~~id~~v~i~hn~~iG~~~~~~ 268 (347)
=+-..-+ +.-.|..|| |...||.+|.|||+|-...- .--.|+||+++ .||.+|.+.
T Consensus 355 E~Kna~i------G~gsKA~HLsYlGDAeiG~~vNiGAGtITcNYDG~nK~~T~IGd~V------------FiGSnt~LV 416 (461)
T TIGR01173 355 EVKNARI------GEGSKAGHLSYLGDAEIGSNVNIGAGTITCNYDGVNKHKTIIGDGV------------FIGSNTQLV 416 (461)
T ss_pred EEECCEE------CCCCCCCCCCEEEEEEECCCCEECCEEEEEECCCCCCCCCEECCCC------------EECCCCEEE
T ss_conf 6524761------8864423143332025079600323168993279622034864887------------877676045
Q ss_pred EEEEEECCCEECCCCEEEECCEEECCEEECCCCEECCCC
Q ss_conf 555650363656972973068783785988888986253
Q gi|254780771|r 269 SQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKS 307 (347)
Q Consensus 269 ~~~~~~g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s 307 (347)
|= ++||++++||++++|... |..+++.-+++
T Consensus 417 AP------V~iG~gA~iaAGstvt~D--Vp~g~La~~R~ 447 (461)
T TIGR01173 417 AP------VKIGDGATIAAGSTVTKD--VPEGALAIARA 447 (461)
T ss_pred CC------EEECCCCEECCCCEEECC--CCCCCCEEECC
T ss_conf 54------394381187124148023--48885266245
No 40
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.89 E-value=4.6e-24 Score=149.29 Aligned_cols=53 Identities=49% Similarity=0.569 Sum_probs=50.1
Q ss_pred CCCEECCCCEEEECCEEECCEEECCCCEECCCCEEEEEECCCCEEEEECCHHH
Q ss_conf 36365697297306878378598888898625326000079878998241758
Q gi|254780771|r 275 GSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPI 327 (347)
Q Consensus 275 g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~v~~~~~~~G~pa~~~ 327 (347)
.-++|||+||||+++.|.++|+||++++|||||+||||+|++++++|+|||.+
T Consensus 117 ~PI~Igd~vWIG~~~~IlpGVtIG~~~vIgAGsVVtkdip~~~v~~GnPArvi 169 (169)
T cd03357 117 KPITIGDNVWIGGGVIILPGVTIGDNSVIGAGSVVTKDIPANVVAAGNPARVI 169 (169)
T ss_pred CCEEECCCCEECCCCEEECCCEECCCCEECCCCEECCCCCCCEEEEEECCEEC
T ss_conf 55698974362899789099799999999889879746599919997586989
No 41
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.89 E-value=6.4e-24 Score=148.52 Aligned_cols=54 Identities=41% Similarity=0.487 Sum_probs=50.3
Q ss_pred CEECCCCEEEECCEEECCEEECCCCEECCCCEEEEE--ECCCCEEEEECCHHHHHH
Q ss_conf 365697297306878378598888898625326000--079878998241758889
Q gi|254780771|r 277 TYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKD--IPAGQQYGGMPARPIGEY 330 (347)
Q Consensus 277 ~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~--v~~~~~~~G~pa~~~~~~ 330 (347)
++||++|+||.++.+.+++.||++++|+++|+|..+ +|++++|+|+|||.+|+-
T Consensus 90 ~~Ig~~v~IG~~~~I~~g~~Ig~~~~I~~gsvV~~~~~ip~~~~~~G~Pak~i~~l 145 (161)
T cd03359 90 AQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPYSVVSGRPARFIGEL 145 (161)
T ss_pred CEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEECCEEEEEEC
T ss_conf 89667715579819949979999989988989889989899819985180895769
No 42
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.89 E-value=2e-23 Score=145.82 Aligned_cols=142 Identities=22% Similarity=0.313 Sum_probs=85.9
Q ss_pred HCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 00112320331122100000002332100233220233100244201000002321344543355666531104443200
Q gi|254780771|r 141 AVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVI 220 (347)
Q Consensus 141 ~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vIG~~GFgf~~~~~~~~~~~~~G~v~ 220 (347)
+.|...+.||.++.|+++++|+.++.||++|.|+++++|.+|+||++|.|.++++|- ..+
T Consensus 260 ~~I~~~v~ig~dv~I~~nvvi~G~v~IG~~v~Ig~g~~I~ns~Ig~~~~I~~~S~Ie--------------------~s~ 319 (456)
T PRK09451 260 FDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGAGCVLKNCVIGDDCEISPYSVVE--------------------DAN 319 (456)
T ss_pred EEEECCEEECCCEEECCCEEEECCEEECCCEEECCCEEEECCEECCCCEEECCEEEC--------------------CCE
T ss_conf 777032896575077577088442475797598240798576984687894225650--------------------663
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEECCCCEEEECCEEEC-------
Q ss_conf 0024444544443322222211111222111234444650357718865556503636569729730687837-------
Q gi|254780771|r 221 IQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAG------- 293 (347)
Q Consensus 221 Ig~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~v~i~hn~~iG~~~~~~~~~~~~g~~~ig~~~~ig~~~~i~~------- 293 (347)
||++|.||.++-|- ..|.|+++++++|.|.| -|..||+++-+--.+-+ |-++||++|-||+++....
T Consensus 320 Ig~~~~IGPfA~lR----p~t~i~~~~~iGnfvEi-K~s~i~~g~k~~HlsYi-GDa~iG~~~NiGAGtit~NyDG~~K~ 393 (456)
T PRK09451 320 LGAACTIGPFARLR----PGAELLEGAHVGNFVEM-KKARLGKGSKAGHLTYL-GDAEIGDNVNIGAGTITCNYDGANKF 393 (456)
T ss_pred ECCCCEECCCCCCC----CCCEECCCCEEEEEEEE-ECCEECCCCEECCEEEE-CCCEECCCCEECCCEEEEECCCCCCC
T ss_conf 43671688864348----87623678888228998-24597589770423366-14476588688887699722487665
Q ss_pred CEEECCCCEECCCCE
Q ss_conf 859888889862532
Q gi|254780771|r 294 YLKIGDNVQIASKSG 308 (347)
Q Consensus 294 ~v~ig~~~~i~a~s~ 308 (347)
+..||++|++|..+.
T Consensus 394 ~t~igd~~fiGsn~~ 408 (456)
T PRK09451 394 KTIIGDDVFVGSDTQ 408 (456)
T ss_pred CCEECCCCEECCCCE
T ss_conf 648789829987844
No 43
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=99.89 E-value=1.1e-23 Score=147.24 Aligned_cols=55 Identities=42% Similarity=0.539 Sum_probs=51.9
Q ss_pred CCEECCCCEEEECCEEECCEEECCCCEECCCCEEEEEECCCCEEEEECCHHHHHH
Q ss_conf 6365697297306878378598888898625326000079878998241758889
Q gi|254780771|r 276 STYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPIGEY 330 (347)
Q Consensus 276 ~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~v~~~~~~~G~pa~~~~~~ 330 (347)
-++||++||||+++.|.++|+||++++|||||+|+||+|++++++|+|||.+|+.
T Consensus 131 pi~Ig~~vwIG~~~~I~pGv~IG~~~vigAgsvVtkdip~~~v~~G~Parvir~i 185 (203)
T PRK09527 131 PITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVTKDIPPNVVAAGVPCRVIREI 185 (203)
T ss_pred CEEECCEEEECCCCEECCCCEECCCCEECCCCEECCCCCCCCEEEEECCEEEEEC
T ss_conf 8599986898999999099299999799149888530699829996282889868
No 44
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=99.88 E-value=3.3e-23 Score=144.64 Aligned_cols=55 Identities=29% Similarity=0.545 Sum_probs=52.2
Q ss_pred EECCCEECCCCEEEECCEEECCEEECCCCEECCCCEEEEEECCCCEEEEECCHHH
Q ss_conf 5036365697297306878378598888898625326000079878998241758
Q gi|254780771|r 273 IAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPI 327 (347)
Q Consensus 273 ~~g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~v~~~~~~~G~pa~~~ 327 (347)
.++.++|||+||||+++.++++++||++++++|+|+|+||+|++++|+|+|||++
T Consensus 53 ~~~~v~Ig~~v~IG~~~~I~~gv~Ig~~svVgagSvV~kdvp~~~i~~G~PAk~I 107 (107)
T cd05825 53 ITAPIVIGDGAWVAAEAFVGPGVTIGEGAVVGARSVVVRDLPAWTVYAGNPAVPV 107 (107)
T ss_pred ECCCEEECCCCEECCCCEEECCCEECCCCEEECCCEECCCCCCCCEEEEECCEEC
T ss_conf 6399799388587498789699191899799489889038599979981475899
No 45
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=99.88 E-value=5.4e-23 Score=143.49 Aligned_cols=100 Identities=36% Similarity=0.503 Sum_probs=84.0
Q ss_pred CCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEECCCCEEEECCEEECCEEE
Q ss_conf 20000244445444433222222111112221112344446503577188655565036365697297306878378598
Q gi|254780771|r 218 RVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKI 297 (347)
Q Consensus 218 ~v~Ig~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~v~i~hn~~iG~~~~~~~~~~~~g~~~ig~~~~ig~~~~i~~~v~i 297 (347)
++.|+.+++||.++.|+++. ..+|+++++|++.|+|.|||.||.++.+. ..++++|||+||||.++.+.++++|
T Consensus 2 Gv~I~~~~~IG~~~~I~~~~--~v~Ig~~~~Ig~~~~I~~~~~ig~~~~~~----~~~~~~Ig~~v~IG~~~~I~~gv~I 75 (101)
T cd03354 2 GIDIHPGAKIGPGLFIDHGT--GIVIGETAVIGDNCTIYQGVTLGGKGKGG----GKRHPTIGDNVVIGAGAKILGNITI 75 (101)
T ss_pred CCEECCCCEECCCEEECCCC--CEEECCCCEECCCCEECCCCEECCCCCCC----CCCCCCCCCCEEECCCCEEECCCEE
T ss_conf 62989999999492991998--77999998999998998887886631146----8777614875863589889298799
Q ss_pred CCCCEECCCCEEEEEECCCCEEEEEC
Q ss_conf 88889862532600007987899824
Q gi|254780771|r 298 GDNVQIASKSGVLKDIPAGQQYGGMP 323 (347)
Q Consensus 298 g~~~~i~a~s~v~~~v~~~~~~~G~p 323 (347)
|++++|+|+|+|+||+|++++|.|+|
T Consensus 76 G~~~vIgagsvV~~dv~~~si~~G~P 101 (101)
T cd03354 76 GDNVKIGANAVVTKDVPANSTVVGVP 101 (101)
T ss_pred CCCCEECCCCEECCCCCCCCEEEECC
T ss_conf 99879987988996859998998039
No 46
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=99.88 E-value=6.4e-23 Score=143.12 Aligned_cols=56 Identities=45% Similarity=0.610 Sum_probs=52.9
Q ss_pred ECCCEECCCCEEEECCEEECCEEECCCCEECCCCEEEEEECCCCEEEEECCHHHHH
Q ss_conf 03636569729730687837859888889862532600007987899824175888
Q gi|254780771|r 274 AGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPIGE 329 (347)
Q Consensus 274 ~g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~v~~~~~~~G~pa~~~~~ 329 (347)
+.-++|||+||||+++.|.++|+||++++|||||+|+||+|++++++|+|||.+|+
T Consensus 127 ~~pi~Ig~~vwig~~~~i~pGv~IG~~~vigagsvV~~dip~~~v~~G~Par~ir~ 182 (183)
T PRK10092 127 GKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKDVPDNVVVGGNPARIIKK 182 (183)
T ss_pred CCCEEECCCCEECCCCEEECCCEECCCCEECCCCEEEEECCCCCEEEEECCEEEEC
T ss_conf 68779899868889989907989999989975988922779992999747578861
No 47
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.86 E-value=9.5e-22 Score=136.75 Aligned_cols=211 Identities=24% Similarity=0.292 Sum_probs=154.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEE-E-E---E--EEE
Q ss_conf 5576543331001565323344200001100112320331122100000002332100233220233-1-0---0--244
Q gi|254780771|r 112 ASSFEGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSS-I-Y---S--SLI 184 (347)
Q Consensus 112 ~~~~~~~I~~~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~-I-~---~--~iI 184 (347)
...+.+-|.|.|.|+++++|++-+.|++++.|+++++|+.+++|.-.+.|+.+++|-..+.|+.--. + + . .+|
T Consensus 5 ~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~I 84 (260)
T COG1043 5 KIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLII 84 (260)
T ss_pred CCCCCEEECCCCCCCCCCEECCEEEECCCCEECCCCEECCCEEEECCCEECCCCEEECCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 45762152787882899888833798897198899588343799677077789879111042898754502798427998
Q ss_pred EECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 20100000232134454335566653110444320000244445444433222222111112221112344446503577
Q gi|254780771|r 185 GNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCG 264 (347)
Q Consensus 185 G~~~~I~~~~vIG~~GFgf~~~~~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~v~i~hn~~iG~~ 264 (347)
|+||.|..++.|-.- ...+ -|.+.||||..+-+++-|. -|++||++|.+-|.+.+|=-|.||++
T Consensus 85 G~~n~IRE~vTi~~G-----T~~g-------~g~T~IGdnnl~May~HVA----HDC~iGn~~ilaNnatLAGHV~igD~ 148 (260)
T COG1043 85 GDNNTIREFVTIHRG-----TVQG-------GGVTRIGDNNLIMAYAHVA----HDCVIGNNCILANNATLAGHVEVGDY 148 (260)
T ss_pred CCCCEEEEEEEEECC-----CCCC-------CEEEEECCCCEEEEEEEEE----CCCEECCCEEEECCCEEECEEEECCE
T ss_conf 899758668898615-----4478-------6159977887898731031----34445671799668668540788778
Q ss_pred EEEEEEEEEECCCEECCCCEEEECCEEECCEEECCCCEECCCCEEEEEEC-CCCEEEEECCHHHHHHHHHHHHHCCH
Q ss_conf 18865556503636569729730687837859888889862532600007-98789982417588897867862282
Q gi|254780771|r 265 CIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIP-AGQQYGGMPARPIGEYLRHMVMLSKP 340 (347)
Q Consensus 265 ~~~~~~~~~~g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~v~-~~~~~~G~pa~~~~~~~~~~~~~~~l 340 (347)
+++.+.+.+-.-++||++|++||.+.+..- +-.++++.+.-...+.+- .|-.-.|.|+..+..-+|-+..+=|.
T Consensus 149 aiiGG~saVHQF~rIG~~amiGg~S~v~~D--VpPy~~~~Gn~a~l~GlN~vGlkRrgf~~e~i~alr~ayk~lfr~ 223 (260)
T COG1043 149 AIIGGLSAVHQFVRIGAHAMIGGLSAVSQD--VPPYVIASGNHARLRGLNIVGLKRRGFSREEIHALRKAYKLLFRS 223 (260)
T ss_pred EEECCCCEEEEEEEECCHHEECCCHHHCCC--CCCEEEECCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHEEC
T ss_conf 997475237778897401123441010367--798388528704421213220110699989999999999998018
No 48
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.85 E-value=1e-21 Score=136.54 Aligned_cols=53 Identities=34% Similarity=0.458 Sum_probs=49.5
Q ss_pred CEECCCCEEEECCEEECCEEECCCCEECCCCEEEE--EECCCCEEEEECCHHHHH
Q ss_conf 36569729730687837859888889862532600--007987899824175888
Q gi|254780771|r 277 TYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLK--DIPAGQQYGGMPARPIGE 329 (347)
Q Consensus 277 ~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~--~v~~~~~~~G~pa~~~~~ 329 (347)
++||++|+||.++.++++.+||++++|+|||+|+. -+|++++++|.|||..|+
T Consensus 90 c~Ig~~~lIGmgA~vldga~IG~~~iVgAgalV~~~k~~p~~~L~~G~Pak~~r~ 144 (176)
T COG0663 90 CTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIPGGSLVVGSPAKVVRP 144 (176)
T ss_pred EEECCCCEEECCCEEECCCEECCCCEECCCCCCCCCCCCCCCEEEECCCCEEEEC
T ss_conf 5987885891386675786988986986687005883779975962374014402
No 49
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.85 E-value=1.9e-21 Score=135.07 Aligned_cols=63 Identities=16% Similarity=0.236 Sum_probs=53.3
Q ss_pred CCCCCCCCEEEEEEEEEECCCEECCCCEEEECCEEECCEEECCCCEECCCCEEEEEECCCCEE
Q ss_conf 465035771886555650363656972973068783785988888986253260000798789
Q gi|254780771|r 257 HNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQY 319 (347)
Q Consensus 257 hn~~iG~~~~~~~~~~~~g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~v~~~~~~ 319 (347)
|.|.||++|++..++.+...++||++|+||+++.+.++..|.+++++.+.....+...+....
T Consensus 82 h~~~IG~~~lIg~~a~V~~ga~Ig~~ciIgags~V~~~~~ip~~slv~G~pa~~~~~~~~~~~ 144 (164)
T cd04646 82 EALKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPENTVIYGADCLRRTQTDRPKP 144 (164)
T ss_pred ECCEECCCCEECCCCEECCCCEECCCCEECCCCCCCCCCEECCCEEEECCCEEEEECCCCCCC
T ss_conf 555976788896898999998999998999898928997929985997887478121567631
No 50
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.84 E-value=1.4e-21 Score=135.92 Aligned_cols=82 Identities=22% Similarity=0.252 Sum_probs=43.0
Q ss_pred CCCCCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCC
Q ss_conf 33100156532334420000110011232033112210000000233210023322023310024420100000232134
Q gi|254780771|r 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGN 198 (347)
Q Consensus 119 I~~~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vIG~ 198 (347)
|+|.|+|.+.+.|++++.|+++|+|.+++.||++|.|++++.|. ++.|++++.+++.+.+.+++||++|.|++++++..
T Consensus 26 I~~~a~I~~~v~IG~~~~Ig~~~~I~~~~~IG~~~~IG~~~~I~-~~vi~~~~~i~~~~~ig~siIG~~v~IGagtvi~n 104 (163)
T cd05636 26 VRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVK-NSIIMDGTKVPHLNYVGDSVLGENVNLGAGTITAN 104 (163)
T ss_pred ECCCCEEECCEEECCCCEEEECCCCCCCEEECCEEEECCCEEEC-CCCCCCCCCCCCCCEECCCEECCCCEECCCEEEEC
T ss_conf 99999997975998998993641226985861301205512421-24014784327756877729929969889837817
Q ss_pred CCC
Q ss_conf 454
Q gi|254780771|r 199 DGF 201 (347)
Q Consensus 199 ~GF 201 (347)
..|
T Consensus 105 ~~~ 107 (163)
T cd05636 105 LRF 107 (163)
T ss_pred CCC
T ss_conf 767
No 51
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.84 E-value=5e-21 Score=132.86 Aligned_cols=55 Identities=33% Similarity=0.508 Sum_probs=43.6
Q ss_pred ECCCEECCCCEEEECCEEECCEEECCCCEECCCCEEE-------EEECCCCEE-EEECCHHHHH
Q ss_conf 0363656972973068783785988888986253260-------000798789-9824175888
Q gi|254780771|r 274 AGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVL-------KDIPAGQQY-GGMPARPIGE 329 (347)
Q Consensus 274 ~g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~-------~~v~~~~~~-~G~pa~~~~~ 329 (347)
-|.++|||+|+||.++.+++ .+||++++|+|+|+|. +-+|+|+++ .|.||+.+|+
T Consensus 80 hG~c~Igd~~~IG~gaiv~~-a~Ig~~~vIgags~V~g~~i~~g~~v~~G~~v~~~~pa~~~~~ 142 (167)
T cd00710 80 HGPAYIGDNCFIGFRSVVFN-AKVGDNCVIGHNAVVDGVEIPPGRYVPAGAVITSQTQADALPD 142 (167)
T ss_pred CCEEEECCCCEECCCCEEEC-CEECCCCEECCCCEEECCCCCCCCEECCCCEEECCCCHHHCCC
T ss_conf 12049839988988989982-5976998998898884778399989558828836996697337
No 52
>TIGR01172 cysE serine O-acetyltransferase; InterPro: IPR005881 The biosynthesis of L-cysteine is the predominant way by which inorganic sulphur is incorporated into organic compounds. In this process, the most abundant utilizable source of sulphur, inorganic sulphate, is taken up and reduced to sulphide. Sulphide is used to produce L-cysteine, which serves for protein synthesis or the production of other sulphur-containing organic compounds. Two routes for cysteine biosynthesis in nature have been documented. Serine transacetylase (2.3.1.30 from EC) catalyzes steps in pathway I, the activation of L-serine by acetyl-coenzyme A, yielding O-acetyl-L-serine.; GO: 0009001 serine O-acetyltransferase activity, 0006535 cysteine biosynthetic process from serine, 0005737 cytoplasm.
Probab=99.83 E-value=3.5e-21 Score=133.70 Aligned_cols=50 Identities=42% Similarity=0.759 Sum_probs=48.1
Q ss_pred CCEECCCCEEEECCEEECCEEECCCCEECCCCEEEEEECCCCEEEEECCH
Q ss_conf 63656972973068783785988888986253260000798789982417
Q gi|254780771|r 276 STYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPAR 325 (347)
Q Consensus 276 ~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~v~~~~~~~G~pa~ 325 (347)
+-+|+|+|+||.+|.|+.+++||+||.|||+|+|++|||++.++.|.|||
T Consensus 114 HPt~~~gV~iGAGAKvLG~I~vG~~AkiGAnsVVl~dVP~~~TVVGvPar 163 (163)
T TIGR01172 114 HPTIGEGVVIGAGAKVLGNIEVGENAKIGANSVVLKDVPAGATVVGVPAR 163 (163)
T ss_pred CCCCCCCEEEEECCEEECCEEECCCCEECCCEEECCCCCCCCEEEEECCC
T ss_conf 88256871784078240376677997772332673537898658743589
No 53
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.82 E-value=8.3e-21 Score=131.66 Aligned_cols=129 Identities=22% Similarity=0.252 Sum_probs=92.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEE
Q ss_conf 76543331001565323344200001100112320331122100000002332100233220233100244201000002
Q gi|254780771|r 114 SFEGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSG 193 (347)
Q Consensus 114 ~~~~~I~~~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~ 193 (347)
.+.+.|.+.|.|++++.|.++++|..++.|++++.|+.++.|++.|.|+++|.|+.++++.....-.+.
T Consensus 5 ~P~A~I~~ga~IG~g~vI~~~a~I~~g~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~g~~i~g~~~p~~~----------- 73 (139)
T cd03350 5 PPGAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLEPLQA----------- 73 (139)
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCCCCCC-----------
T ss_conf 998298899999999899889998439898987278666602686699993289888678444257646-----------
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 32134454335566653110444320000244445444433222222111112221112344446503577188655565
Q gi|254780771|r 194 VRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGI 273 (347)
Q Consensus 194 ~vIG~~GFgf~~~~~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~v~i~hn~~iG~~~~~~~~~~~ 273 (347)
. .++|+|+|.||+|++|-.|
T Consensus 74 -------------------~----~v~IeD~~~IGa~a~V~~G------------------------------------- 93 (139)
T cd03350 74 -------------------T----PVIIEDDVFIGANCEVVEG------------------------------------- 93 (139)
T ss_pred -------------------C----CCEECCCEEEEECCEEECC-------------------------------------
T ss_conf -------------------8----8688799599309989468-------------------------------------
Q ss_pred ECCCEECCCCEEEECCEEECCEEECCCCEECCCCEEEEEECCCCEE
Q ss_conf 0363656972973068783785988888986253260000798789
Q gi|254780771|r 274 AGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQY 319 (347)
Q Consensus 274 ~g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~v~~~~~~ 319 (347)
++||+++++|+++.+...+.+=+ +.++..+.-.+||++++
T Consensus 94 ---v~IG~~avIGAGsVVtkdvp~y~---~~~g~~~~~~~p~~~~~ 133 (139)
T cd03350 94 ---VIVGKGAVLAAGVVLTQSTPIYD---RETGEIYYGRVPPGSVV 133 (139)
T ss_pred ---CEECCCCEECCCCEEECCCCCEE---EECCCEEECCCCCCCEE
T ss_conf ---79999989997988918988468---23780970116998787
No 54
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.82 E-value=3.6e-20 Score=128.20 Aligned_cols=62 Identities=18% Similarity=0.264 Sum_probs=52.2
Q ss_pred CCCCCCCCEEEEEEEEEECCCEECCCCEEEECCEEECCEEECCCCEECCC-CEEEEEECCCCE
Q ss_conf 46503577188655565036365697297306878378598888898625-326000079878
Q gi|254780771|r 257 HNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASK-SGVLKDIPAGQQ 318 (347)
Q Consensus 257 hn~~iG~~~~~~~~~~~~g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~-s~v~~~v~~~~~ 318 (347)
|+|.||++|++..++.+...++||++|+||+++.+.++-.|.+++++++. +-+.|++++.++
T Consensus 76 ~g~~Ig~~~~IG~~a~I~~gv~IG~~~vIgagsvV~~~~~vp~~~v~~G~PAr~ir~~~~~e~ 138 (153)
T cd04645 76 HGCTIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPPGKVIPPGSLVAGSPAKVVRELTDEEI 138 (153)
T ss_pred ECEEEEEEEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEECCCEEECCCCHHHH
T ss_conf 241873004770543985699988997994498974897969985999628379715999999
No 55
>PRK10191 putative colanic acid biosynthesis acetyltransferase WcaB; Provisional
Probab=99.79 E-value=2e-19 Score=124.16 Aligned_cols=51 Identities=31% Similarity=0.465 Sum_probs=48.1
Q ss_pred CCEECCCCEEEECCEEECCEEECCCCEECCCCEEEEEECCCCEEEEECCHH
Q ss_conf 636569729730687837859888889862532600007987899824175
Q gi|254780771|r 276 STYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARP 326 (347)
Q Consensus 276 ~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~v~~~~~~~G~pa~~ 326 (347)
.-+|||+|+||.++.+.++++||++++|||+|+|++|+|+++++.|+|||-
T Consensus 92 ~P~Ig~~V~Igaga~IlG~i~IG~~~~IGA~svV~~dvp~~~~v~G~Pari 142 (146)
T PRK10191 92 CPHIGNGVELGANVIILGDITLGNNVTVGAGSVVLDSVPDNALVVGEKARV 142 (146)
T ss_pred CCEECCCEEEECCCEEECCCEECCCCEECCCCEECCCCCCCCEEEEECCEE
T ss_conf 898799959928999964859999999998958970359999999768099
No 56
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.78 E-value=2e-19 Score=124.21 Aligned_cols=92 Identities=18% Similarity=0.267 Sum_probs=60.4
Q ss_pred CEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCEEEEEEEEEECCCEECCCCEEEECCEEECCEEE
Q ss_conf 0000244445444433222222111112221112344446-503577188655565036365697297306878378598
Q gi|254780771|r 219 VIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHN-VHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKI 297 (347)
Q Consensus 219 v~Ig~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~v~i~hn-~~iG~~~~~~~~~~~~g~~~ig~~~~ig~~~~i~~~v~i 297 (347)
+.||++|.||.+++| |. |+||++|.+..++.+.. ++||++|+||.++.+ .+++|
T Consensus 65 ~~IG~~vtIgh~a~i-----------------------hG~c~Igd~~~IG~gaiv~~-a~Ig~~~vIgags~V-~g~~i 119 (167)
T cd00710 65 VWIGKNVSIAHGAIV-----------------------HGPAYIGDNCFIGFRSVVFN-AKVGDNCVIGHNAVV-DGVEI 119 (167)
T ss_pred EEECCCCEECCCCEE-----------------------CCEEEECCCCEECCCCEEEC-CEECCCCEECCCCEE-ECCCC
T ss_conf 497798289898488-----------------------12049839988988989982-597699899889888-47783
Q ss_pred CCCCEECCCCEEEEEECCCCEEEEECCHHHHHHHHHHHHH
Q ss_conf 8888986253260000798789982417588897867862
Q gi|254780771|r 298 GDNVQIASKSGVLKDIPAGQQYGGMPARPIGEYLRHMVML 337 (347)
Q Consensus 298 g~~~~i~a~s~v~~~v~~~~~~~G~pa~~~~~~~~~~~~~ 337 (347)
..+.++.+|+.|++..|+..+--- ...-++|.|..+..
T Consensus 120 ~~g~~v~~G~~v~~~~pa~~~~~l--t~~~~~~~~~~~~~ 157 (167)
T cd00710 120 PPGRYVPAGAVITSQTQADALPDV--TDSAREFNEKVITV 157 (167)
T ss_pred CCCCEECCCCEEECCCCHHHCCCC--CHHHHHHHHHHHHH
T ss_conf 999895588288369966973379--99999999999999
No 57
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.77 E-value=3.3e-19 Score=122.96 Aligned_cols=61 Identities=20% Similarity=0.286 Sum_probs=45.0
Q ss_pred CCCCCCCCEEEEEEEEEECCCEECCCCEEEECCEEECCEEECCCCEECCC-CEEEEEECCCC
Q ss_conf 46503577188655565036365697297306878378598888898625-32600007987
Q gi|254780771|r 257 HNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASK-SGVLKDIPAGQ 317 (347)
Q Consensus 257 hn~~iG~~~~~~~~~~~~g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~-s~v~~~v~~~~ 317 (347)
|.|.||++|++.+++.+.-.++||++|++|+++.+.++-.|.+++++++. +-+.|++++.+
T Consensus 77 ~g~~Ig~~v~IG~~a~I~~Gv~IG~~svIgaGsVV~~~~~Vp~~~lv~G~PAr~ir~l~~~~ 138 (154)
T cd04650 77 HGAKVGNYVIVGMGAILLNGAKIGDHVIIGAGAVVTPGKEIPDYSLVLGVPAKVVRKLTEEE 138 (154)
T ss_pred ECCEECCEEEECCCEEEECCCEECCCCEECCCCEECCCCEECCCCEEEECCEEEEEECCHHH
T ss_conf 23022013598872299628798999799889888799791998499961818977299999
No 58
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.77 E-value=6.1e-19 Score=121.52 Aligned_cols=61 Identities=16% Similarity=0.302 Sum_probs=49.6
Q ss_pred CCCCCCCCEEEEEEEEEECCCEECCCCEEEECCEEECCEEECCCCEECCC-CEEEEEECCCC
Q ss_conf 46503577188655565036365697297306878378598888898625-32600007987
Q gi|254780771|r 257 HNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASK-SGVLKDIPAGQ 317 (347)
Q Consensus 257 hn~~iG~~~~~~~~~~~~g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~-s~v~~~v~~~~ 317 (347)
|+|.||++|++..++.+..+++||++|++|.++.+..+..|.+++++++. +.+.|++.+.+
T Consensus 77 ~g~~Ig~~~~IG~~a~I~~G~~IG~~siIgagSvV~~~~~VP~~~l~~GnPAk~ir~l~~~e 138 (155)
T cd04745 77 HGCTIGRNALVGMNAVVMDGAVIGEESIVGAMAFVKAGTVIPPRSLIAGSPAKVIRELSDEE 138 (155)
T ss_pred CCCEEEEEEEECCCCEEECCCEECCCCEEEECCEECCCCCCCCCEEEEEECCEEEECCCHHH
T ss_conf 15177432497687599597798999799418787699683799899972867974399999
No 59
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=99.76 E-value=5.7e-19 Score=121.71 Aligned_cols=56 Identities=38% Similarity=0.494 Sum_probs=52.7
Q ss_pred ECCCEECCCCEEEECCEEECCEEECCCCEECCCCEEEEEECCCCEEEEECCHHHHH
Q ss_conf 03636569729730687837859888889862532600007987899824175888
Q gi|254780771|r 274 AGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPIGE 329 (347)
Q Consensus 274 ~g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~v~~~~~~~G~pa~~~~~ 329 (347)
++.++||++||||.++.++++|+||+++++||+|+|+||+|++.++.|+||+.+|+
T Consensus 122 ~~~v~IG~~vwIG~~a~IlpGV~IG~gavigagsVVtkdvp~~~iv~G~Pa~vir~ 177 (190)
T COG0110 122 AGPVTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVTKDVPPYGIVAGNPARVIRK 177 (190)
T ss_pred CCCCEECCCCEECCCCEECCCEEECCCEEEECCEEEECCCCCCEEEECCCCEEEEE
T ss_conf 78978899858778978979859899819978858957779982897999889874
No 60
>KOG4750 consensus
Probab=99.75 E-value=7.7e-19 Score=121.00 Aligned_cols=81 Identities=37% Similarity=0.496 Sum_probs=62.7
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEECCCCEEEECCEEECCEEECCCCEECCCCEEEEEECCCCEEEEECCH
Q ss_conf 22211123444465035771886555650363656972973068783785988888986253260000798789982417
Q gi|254780771|r 246 NTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPAR 325 (347)
Q Consensus 246 ~~~id~~v~i~hn~~iG~~~~~~~~~~~~g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~v~~~~~~~G~pa~ 325 (347)
-..+++.|.|.|++.+|..- +.-=..+.+|||+||||++++|.++|+||.+++|+|||+|+||||++++..|||||
T Consensus 174 TAvvg~~vSilH~Vtlggtg----k~~gdrhP~Igd~vliGaGvtILgnV~IGegavIaAGsvV~kDVP~~~~AvGnPAk 249 (269)
T KOG4750 174 TAVVGDNVSILHPVTLGGTG----KGSGDRHPKIGDNVLIGAGVTILGNVTIGEGAVIAAGSVVLKDVPPNTLAVGNPAK 249 (269)
T ss_pred EEEECCCEEEECCEEECCCC----CCCCCCCCCCCCCEEECCCCEEECCEEECCCCEEECCCEEEECCCCCCEECCCCHH
T ss_conf 24742644664443114654----66555688556770875541785781677886773050697216987530488233
Q ss_pred HHHHH
Q ss_conf 58889
Q gi|254780771|r 326 PIGEY 330 (347)
Q Consensus 326 ~~~~~ 330 (347)
+++..
T Consensus 250 lIg~~ 254 (269)
T KOG4750 250 LIGKI 254 (269)
T ss_pred HCCCC
T ss_conf 23434
No 61
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.75 E-value=1.7e-18 Score=119.12 Aligned_cols=150 Identities=29% Similarity=0.410 Sum_probs=73.7
Q ss_pred CCCCCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEE-EEEEECCCCCEEEECC
Q ss_conf 331001565323344200001100112320331122100000002332100233220233100-2442010000023213
Q gi|254780771|r 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYS-SLIGNSVILHSGVRIG 197 (347)
Q Consensus 119 I~~~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~-~iIG~~~~I~~~~vIG 197 (347)
|+|...+.....|++++.|||+++|. ++.||+|+.|.++++|. +++||++|.|||.+.+++ +.+++++.|+..+=+-
T Consensus 277 I~p~v~l~G~t~ig~~v~iGpg~~i~-ds~I~~~a~I~~~S~ie-~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEvK 354 (460)
T COG1207 277 IEPNVILEGNTVIGDNVVIGPGSVIK-DSVIGDNAVIKAYSVIE-GSTVGEGATVGPFARLRPGAVLGADVHIGNFVEVK 354 (460)
T ss_pred EECCCEEEEEEEECCCEEECCCCEEE-EEEECCCCEEEECCEEE-CCEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEE
T ss_conf 91484894158967964999996787-53876998897510430-55854796337831017968526797674259984
Q ss_pred CCCCCCCCCCCCCCCCCCC---CCCEECCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 4454335566653110444---32000024444544443322---22221111122211123444465035771886555
Q gi|254780771|r 198 NDGFGYARGVSDIHKIVHI---GRVIIQDKVEIGANSAIDRG---TIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQV 271 (347)
Q Consensus 198 ~~GFgf~~~~~~~~~~~~~---G~v~Ig~~v~IG~n~tIdrg---~~~~t~Ig~~~~id~~v~i~hn~~iG~~~~~~~~~ 271 (347)
..- =+.-.|.+|+ |...||.+|.|||++....- ..-.|+||+ |+.||.++.+.|-
T Consensus 355 ~a~------ig~gsKa~HLtYlGDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd------------~vFiGSns~LVAP- 415 (460)
T COG1207 355 KAT------IGKGSKAGHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGD------------NVFIGSNSQLVAP- 415 (460)
T ss_pred CCC------CCCCCCCCCEEEECCCEECCCCEECCCEEEECCCCCCCCEEEECC------------CCEECCCCCEEEE-
T ss_conf 356------068863353234213320687421442599847886332006468------------8577668718864-
Q ss_pred EEECCCEECCCCEEEECCEEECC
Q ss_conf 65036365697297306878378
Q gi|254780771|r 272 GIAGSTYIGDNVLIGGQCGIAGY 294 (347)
Q Consensus 272 ~~~g~~~ig~~~~ig~~~~i~~~ 294 (347)
++|||++++|++++|...
T Consensus 416 -----V~IGd~a~iaAGStIT~D 433 (460)
T COG1207 416 -----VTIGDGATIAAGSTITKD 433 (460)
T ss_pred -----EEECCCCEECCCCEECCC
T ss_conf -----896698488146368365
No 62
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.74 E-value=3.3e-18 Score=117.60 Aligned_cols=153 Identities=23% Similarity=0.202 Sum_probs=97.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEE-EEEEECCCCCE
Q ss_conf 76543331001565323344200001100112320331122100000002332100233220233100-24420100000
Q gi|254780771|r 114 SFEGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYS-SLIGNSVILHS 192 (347)
Q Consensus 114 ~~~~~I~~~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~-~iIG~~~~I~~ 192 (347)
...+.|||+|.|. ++++|+++.|++++.+. ++.||++++|+++|.|. +++||+.|.|++++.|.. ..-.+.+..+.
T Consensus 6 ~~~p~Ihp~a~i~-~~~lG~~v~Ig~~~~i~-ns~IGDySyI~~~~~I~-n~~IGkfcsIa~~v~I~~~nHp~~~~s~~~ 82 (204)
T TIGR03308 6 SPEPTLHPTAELT-ESKLGRYTEIGERTRLR-EVALGDYSYVMRDCDII-YTTIGKFCSIAAMVRINATNHPMERPTLHH 82 (204)
T ss_pred CCCCEECCCCEEC-CCCCCCCEEECCCCEEE-CCEECCCCEECCCCEEE-CCEECCCCEECCCCEECCCCCCCCCCEECC
T ss_conf 7997689998683-27837833999995883-37999985888997598-886999848889879898778766726777
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf 23213445433556665311044432000024444544443322222211111222111234444650357718865556
Q gi|254780771|r 193 GVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVG 272 (347)
Q Consensus 193 ~~vIG~~GFgf~~~~~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~v~i~hn~~iG~~~~~~~~~~ 272 (347)
.+-.+...|.-......+..-..-..++||++|.||+|++|-
T Consensus 83 f~y~~~~~~~~~~~~~~~~~~~~~~~~~Ig~dvwiG~~~~i~-------------------------------------- 124 (204)
T TIGR03308 83 FTYRAAMYFDDASDDADFFAWRRAKRVTIGHDVWIGHGAVIL-------------------------------------- 124 (204)
T ss_pred EEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCEECCCCEEC--------------------------------------
T ss_conf 755375334666661223213347870989976887998991--------------------------------------
Q ss_pred EECCCEECCCCEEEECCEEECCEEECCCCEECCC-CEEEE
Q ss_conf 5036365697297306878378598888898625-32600
Q gi|254780771|r 273 IAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASK-SGVLK 311 (347)
Q Consensus 273 ~~g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~-s~v~~ 311 (347)
..++||+++++|+++.+.. .|.+++++++. +.+.|
T Consensus 125 --~gv~IG~gavigagsvVtk--dv~~~~iv~G~PAk~ir 160 (204)
T TIGR03308 125 --PGVTIGNGAVIAAGAVVTK--DVAPYTIVAGVPAKLIR 160 (204)
T ss_pred --CCCEECCCCEECCCCEECC--CCCCCEEEEECCCEEEE
T ss_conf --9979999989977998995--17998499841885663
No 63
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=99.73 E-value=2.4e-18 Score=118.31 Aligned_cols=54 Identities=44% Similarity=0.706 Sum_probs=50.3
Q ss_pred CCEECCCCEEEECCEEECCEEECCCCEECCCCEEEEEECCCCEEEEECCHHHHH
Q ss_conf 636569729730687837859888889862532600007987899824175888
Q gi|254780771|r 276 STYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPIGE 329 (347)
Q Consensus 276 ~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~v~~~~~~~G~pa~~~~~ 329 (347)
+.+||++|+||+++.|...++||+++.|||+|+|.+|||++.++.|.|||.++.
T Consensus 119 hPtIg~~V~IGagAkILG~I~IGd~a~IGA~sVVlkdVP~~~tvvGvPArii~~ 172 (194)
T COG1045 119 HPTIGNGVYIGAGAKILGNIEIGDNAKIGAGSVVLKDVPPNATVVGVPARVIGR 172 (194)
T ss_pred CCCCCCCEEECCCCEEECCEEECCCCEECCCCEECCCCCCCCEEECCCCEEECC
T ss_conf 983178859899988971668878978887866815789996686676468535
No 64
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.73 E-value=1.3e-17 Score=114.34 Aligned_cols=124 Identities=23% Similarity=0.262 Sum_probs=71.4
Q ss_pred CCCCCCCCCCCEEEEEEE---EE-EEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCC
Q ss_conf 332100233220233100---24-42010000023213445433556665311044432000024444544443322222
Q gi|254780771|r 164 GVRIGRNCSIGAGSSIYS---SL-IGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTID 239 (347)
Q Consensus 164 ~~~IG~~~~I~~~~~I~~---~i-IG~~~~I~~~~vIG~~GFgf~~~~~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~ 239 (347)
|++||++|.|+++++|+. .+ ||++|.|++|++|......+. ..+....+.|||+|.||.+|.++
T Consensus 21 nI~IG~~ssI~~~avirGD~~~I~IG~~~~I~d~~~I~~~~~~~~-------~~~~~~p~~IGd~v~Ig~~~~i~----- 88 (161)
T cd03359 21 NIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFS-------KGVAFFPLHIGDYVFIGENCVVN----- 88 (161)
T ss_pred CEEECCCCEECCCCEEECCCCCEEECCCCEECCCCEEECCCCCCC-------CCCCCCCCEECCCEEECCCEEEE-----
T ss_conf 759999878999968967886549999858889989924644357-------78888772848987989982884-----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEECCCCEEEECCEEECCEEECCCCEECCC-CEEEEEECCCC
Q ss_conf 2111112221112344446503577188655565036365697297306878378598888898625-32600007987
Q gi|254780771|r 240 DTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASK-SGVLKDIPAGQ 317 (347)
Q Consensus 240 ~t~Ig~~~~id~~v~i~hn~~iG~~~~~~~~~~~~g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~-s~v~~~v~~~~ 317 (347)
.+.+++.|.||.||.|+ ..++||++|+|+.++.+.++..|.+++++++. +.+.+++++.+
T Consensus 89 ------~~~Ig~~v~IG~~~~I~------------~g~~Ig~~~~I~~gsvV~~~~~ip~~~~~~G~Pak~i~~l~e~~ 149 (161)
T cd03359 89 ------AAQIGSYVHIGKNCVIG------------RRCIIKDCVKILDGTVVPPDTVIPPYSVVSGRPARFIGELPECT 149 (161)
T ss_pred ------CCEECCCEEECCCCEEC------------CCCEECCCCEECCCCEECCCCEECCCCEEEECCEEEEEECCHHH
T ss_conf ------88966771557981994------------99799999899889898899898998199851808957699999
No 65
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.72 E-value=3.7e-18 Score=117.26 Aligned_cols=97 Identities=11% Similarity=0.204 Sum_probs=74.2
Q ss_pred EEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 42010000023213445433556665311044432000024444544443322222211111222111234444650357
Q gi|254780771|r 184 IGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGC 263 (347)
Q Consensus 184 IG~~~~I~~~~vIG~~GFgf~~~~~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~v~i~hn~~iG~ 263 (347)
||+++.|++|++|..+. + ..+.||++|.||.++.+ |.|.||+
T Consensus 52 IG~~tNIQD~~viH~~~-------~--------~~~~IG~~vtIGH~ail-----------------------hgc~Igd 93 (196)
T PRK13627 52 VQAGANLQDGCIMHGYC-------D--------TDTIVGENGHIGHGAIL-----------------------HGCVIGR 93 (196)
T ss_pred ECCCCEECCCCEEECCC-------C--------CCCEECCCEEECCCEEE-----------------------EEEEEEC
T ss_conf 89986767983781489-------9--------98588898058787299-----------------------6349948
Q ss_pred CEEEEEEEEEECCCEECCCCEEEECCEEECCEEECCCCEECCC-CEEEEEECCCCE
Q ss_conf 7188655565036365697297306878378598888898625-326000079878
Q gi|254780771|r 264 GCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASK-SGVLKDIPAGQQ 318 (347)
Q Consensus 264 ~~~~~~~~~~~g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~-s~v~~~v~~~~~ 318 (347)
+|++..++.+.-.++||++|++|+++.+.++.+|.++.++++. +.+.|++.+.++
T Consensus 94 ~~lIGmgavVldga~Ig~~~iI~AgslV~~g~~ip~~~L~~G~PAk~vR~lt~~ei 149 (196)
T PRK13627 94 DALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEKRQLLMGTPARAVRSVSDQEL 149 (196)
T ss_pred CCEECCCCEEECCCEECCCCEECCCCEECCCCCCCCCCEEEECCEEEEECCCHHHH
T ss_conf 97884697992888999998997686457994938981998778168114999999
No 66
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=99.71 E-value=7.3e-18 Score=115.69 Aligned_cols=54 Identities=31% Similarity=0.579 Sum_probs=50.5
Q ss_pred CCEECCCCEEEECCEEECCEEECCCCEECCCCEEEEEECCCCEEEEECCHHHHH
Q ss_conf 636569729730687837859888889862532600007987899824175888
Q gi|254780771|r 276 STYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPIGE 329 (347)
Q Consensus 276 ~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~v~~~~~~~G~pa~~~~~ 329 (347)
+-+||++|.||.++.|.++++||+++.|||+|+|++|||+++++.|.|||...+
T Consensus 193 HP~i~~~v~igaga~iLG~i~iG~~a~igA~svVl~dvp~~~tv~GvPa~~vg~ 246 (273)
T PRK11132 193 HPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQPVPPHTTAAGVPARIVGK 246 (273)
T ss_pred CCCCCCCEEECCCCEEECCEEECCCCEECCCCEECCCCCCCCEEECCCCEEECC
T ss_conf 980488848754888971858899988867866864379998796667203088
No 67
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY; InterPro: IPR011974 Members of this family are located next to other genes organised into apparent operons for phenylacetic acid degradation . PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator..
Probab=99.70 E-value=2e-17 Score=113.26 Aligned_cols=102 Identities=24% Similarity=0.393 Sum_probs=75.1
Q ss_pred CCEECCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEECCCCEEEECCEEECCEE
Q ss_conf 20000244445444433222-22211111222111234444650357718865556503636569729730687837859
Q gi|254780771|r 218 RVIIQDKVEIGANSAIDRGT-IDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLK 296 (347)
Q Consensus 218 ~v~Ig~~v~IG~n~tIdrg~-~~~t~Ig~~~~id~~v~i~hn~~iG~~~~~~~~~~~~g~~~ig~~~~ig~~~~i~~~v~ 296 (347)
+.++.|...|.-+|.-. |. -.||+++++= ||||...+- +++||+|+.+|.|+.++|+..
T Consensus 47 rIvl~eGAN~QD~CVMH-GFPg~DTvVeenG------HvGHgAiLH-------------gC~vgrnaLvGMNAVVMDgAv 106 (193)
T TIGR02287 47 RIVLKEGANVQDTCVMH-GFPGQDTVVEENG------HVGHGAILH-------------GCRVGRNALVGMNAVVMDGAV 106 (193)
T ss_pred CEEEECCCCCCCCCEEC-CCCCCCEEEECCC------CCCCCEEEC-------------CCEECCCCEECCCEEEECCCE
T ss_conf 25753488614642436-7299886760688------233212351-------------546325231116506616646
Q ss_pred ECCCCEECCCCEEEE--EECCCCEEEEECCHHHHHHHHHHHHHCC
Q ss_conf 888889862532600--0079878998241758889786786228
Q gi|254780771|r 297 IGDNVQIASKSGVLK--DIPAGQQYGGMPARPIGEYLRHMVMLSK 339 (347)
Q Consensus 297 ig~~~~i~a~s~v~~--~v~~~~~~~G~pa~~~~~~~~~~~~~~~ 339 (347)
||++++|+|.|-|.- .+|+..+++|+|||-+|+.-++...-|+
T Consensus 107 ige~sIVaA~aFVKAg~E~paq~Lv~GsPAkv~R~LseQElaWK~ 151 (193)
T TIGR02287 107 IGERSIVAASAFVKAGAEIPAQVLVVGSPAKVVRELSEQELAWKK 151 (193)
T ss_pred ECCCCCEEHHHHHHCCCCCCCCCEEECCCCEEEECCHHHHHHHHH
T ss_conf 677412002033434734784612662873055331146788741
No 68
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.69 E-value=1.4e-17 Score=114.23 Aligned_cols=95 Identities=34% Similarity=0.526 Sum_probs=81.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCE
Q ss_conf 57654333100156532334420000110011232033112210000000233210023322023310024420100000
Q gi|254780771|r 113 SSFEGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHS 192 (347)
Q Consensus 113 ~~~~~~I~~~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~ 192 (347)
....+.|.|.|+|.+.+.||++++|-+.++|..+++||+++.|..++++++.++||++|+|+++++|.. ++.+
T Consensus 83 ~~~~aRIepgaiir~~v~IG~~aVImmga~INiGA~IGegtmId~~Avvg~~a~IGk~~HisaGa~laG-------VleP 155 (231)
T TIGR03532 83 KNINARIEPGAIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAG-------VIEP 155 (231)
T ss_pred CCCCCEECCCCEEECCEEECCCEEEECCCEEECCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEC-------CCCC
T ss_conf 147835778858842529879839913888704859878945805856445468879705889864300-------2257
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCC
Q ss_conf 2321344543355666531104443200002444454444332
Q gi|254780771|r 193 GVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDR 235 (347)
Q Consensus 193 ~~vIG~~GFgf~~~~~~~~~~~~~G~v~Ig~~v~IG~n~tIdr 235 (347)
||..-|+|||+|.||+|++|-.
T Consensus 156 ---------------------~~a~PViIeDnV~IGAnAvIl~ 177 (231)
T TIGR03532 156 ---------------------PSAKPVVIEDNVLIGANAVILE 177 (231)
T ss_pred ---------------------CCCCCEEECCCEEECCCCEECC
T ss_conf ---------------------6679979878859879979919
No 69
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.64 E-value=3.5e-16 Score=106.57 Aligned_cols=155 Identities=23% Similarity=0.333 Sum_probs=92.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEE
Q ss_conf 65433310015653233442000011001123203311221000000023321002332202331002442010000023
Q gi|254780771|r 115 FEGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGV 194 (347)
Q Consensus 115 ~~~~I~~~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~ 194 (347)
..+.||++|+|+++|.+=- +|+||+++.|+++++|..+. ..-.||+++.|++|+
T Consensus 10 ~~P~i~~~a~Va~~A~viG------------dV~Ig~~vsIw~~aVlRgD~--------------~~I~IG~~tNIQDg~ 63 (176)
T COG0663 10 LSPKIDPTAFVAPSATVIG------------DVRIGAGVSIWPGAVLRGDV--------------EPIRIGARTNIQDGV 63 (176)
T ss_pred CCCCCCCCEEECCCCEEEE------------EEEECCCCEECCCEEEECCC--------------CCEEECCCCEECCCE
T ss_conf 7987898628779997998------------59999997887763897467--------------756987885603783
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEE
Q ss_conf 21344543355666531104443200002444454444332222221111122211123444465035771886555650
Q gi|254780771|r 195 RIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIA 274 (347)
Q Consensus 195 vIG~~GFgf~~~~~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~v~i~hn~~iG~~~~~~~~~~~~ 274 (347)
+|.++.. . -+.||++|.||-++.| |.|.||++|++.-++.+.
T Consensus 64 ViH~~~~-----------~----p~~IG~~vtIGH~aiv-----------------------HGc~Ig~~~lIGmgA~vl 105 (176)
T COG0663 64 VIHADPG-----------Y----PVTIGDDVTIGHGAVV-----------------------HGCTIGDNVLIGMGATVL 105 (176)
T ss_pred EEECCCC-----------C----CEEECCCCEECCCCEE-----------------------EEEEECCCCEEECCCEEE
T ss_conf 8952799-----------9----9297799588576589-----------------------885987885891386675
Q ss_pred CCCEECCCCEEEECCEEECCEEECCCCEECCC-CEEEEEECCCCEEEEECCHHHHHHHHHHHHHCC
Q ss_conf 36365697297306878378598888898625-326000079878998241758889786786228
Q gi|254780771|r 275 GSTYIGDNVLIGGQCGIAGYLKIGDNVQIASK-SGVLKDIPAGQQYGGMPARPIGEYLRHMVMLSK 339 (347)
Q Consensus 275 g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~-s~v~~~v~~~~~~~G~pa~~~~~~~~~~~~~~~ 339 (347)
-.++||++|++|.++.+.++-.+.++.++-+- +.+.+.+.+-+ ...+++.-++++.+++
T Consensus 106 dga~IG~~~iVgAgalV~~~k~~p~~~L~~G~Pak~~r~l~~~~------~~~~~~~a~~Yv~~~~ 165 (176)
T COG0663 106 DGAVIGDGSIVGAGALVTPGKEIPGGSLVVGSPAKVVRPLDDEE------LAWLRENAENYVKLAD 165 (176)
T ss_pred CCCEECCCCEECCCCCCCCCCCCCCCEEEECCCCEEEECCCHHH------HHHHHHHHHHHHHHHH
T ss_conf 78698898698668700588377997596237401440288667------6666674899999888
No 70
>pfam04613 LpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD. UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.-) catalyses an early step in lipid A biosynthesis: UDP-3-O-(3-hydroxytetradecanoyl)glucosamine + (R)-3-hydroxytetradecanoyl- [acyl carrier protein] - UDP-2,3-bis(3-hydroxytetradecanoyl)glucosamine + [acyl carrier protein]. Members of this family also contain a hexapeptide repeat (pfam00132). This family constitutes the non-repeating region of LPXD proteins.
Probab=99.64 E-value=3.1e-16 Score=106.88 Aligned_cols=72 Identities=32% Similarity=0.628 Sum_probs=68.7
Q ss_pred CCEEECCCCCHHHCCCCCEEEECCHHHHHHHHHCCCEEEEECHHHHHCCCCCCCCEECCCCCHHHHHHCCCC
Q ss_conf 633871567988889986999618676777754585699988776101444553100123201122101211
Q gi|254780771|r 32 GERMIYSLSPIARASTGDISYIISRKFLNNIEKCKASAIICSQDIVPFIPKNIPCLLSDKPEVSFAIAGSIL 103 (347)
Q Consensus 32 ~d~~I~~I~~l~~A~~~~IsFi~~~kyl~~l~~s~A~aiI~~~d~~~~~~~~~~~Iiv~nP~~afA~i~~~l 103 (347)
+|.+|+++++|++|++++|||+.++||.+.+.+|+|+++|+++++....|.+.+.|+++|||++||+++++|
T Consensus 1 gd~~I~~va~l~~A~~~~isF~~n~ky~~~l~~t~A~aviv~~~~~~~~~~~~~~Iiv~nP~~afa~i~~lF 72 (72)
T pfam04613 1 GDREISGIAPLEEAGPGDISFLANPKYLKQLKTTKASAVIVTPDFADLVPEGIALLVVKNPYLAFAKLLQLF 72 (72)
T ss_pred CCCEEECCCCHHHCCCCCEEEECCHHHHHHHHHCCCCEEEECHHHHHHCCCCCCEEEECCHHHHHHHHHHHC
T ss_conf 994780454764389997899668878999986889899973788745768986899899899999999759
No 71
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.61 E-value=7.6e-16 Score=104.76 Aligned_cols=83 Identities=24% Similarity=0.309 Sum_probs=49.6
Q ss_pred CCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 34420000110011232033112210000000233210023322023310024420100000232134454335566653
Q gi|254780771|r 131 IEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDI 210 (347)
Q Consensus 131 I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vIG~~GFgf~~~~~~~ 210 (347)
||+++.|+++++|+++++||++|.|++++.|+++++||++|.|++++++.+ +-|-. ...
T Consensus 1 IG~~~~Ig~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~~~~-----------------~~~~~----~~~ 59 (119)
T cd03358 1 IGDNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTN-----------------DLYPR----SKI 59 (119)
T ss_pred CCCCCEECCCCEECCCCEECCCEEECCCCCCCCCCEEEEEEEECCCCCCCC-----------------CCCCC----CCC
T ss_conf 989989999989999999999969999863678999843779778863304-----------------44667----643
Q ss_pred CCCCCCCCCEECCCCCCCCCCCCC
Q ss_conf 110444320000244445444433
Q gi|254780771|r 211 HKIVHIGRVIIQDKVEIGANSAID 234 (347)
Q Consensus 211 ~~~~~~G~v~Ig~~v~IG~n~tId 234 (347)
..-...+.++|||+|.||++++|-
T Consensus 60 ~~~~~~~~v~Ig~~v~IG~~~~I~ 83 (119)
T cd03358 60 YRKWELKGTTVKRGASIGANATIL 83 (119)
T ss_pred CCCCCCCCCEECCCEEECCCCEEE
T ss_conf 467632483987883848874778
No 72
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.56 E-value=2.1e-15 Score=102.35 Aligned_cols=96 Identities=23% Similarity=0.251 Sum_probs=52.6
Q ss_pred CCCCCCEEHHHCCCCCCEEEECCCCCCCCHHC---CCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCCCCCCCCCCC
Q ss_conf 34420000110011232033112210000000---233210023322023310024420100000232134454335566
Q gi|254780771|r 131 IEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIG---AGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGV 207 (347)
Q Consensus 131 I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~---~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vIG~~GFgf~~~~ 207 (347)
+.....+.|.+++++++.| .++.|+++|+|. .++.||++|.|+++++|.+|+|+++|.|+++|+|.
T Consensus 273 i~~~~~~~~p~~i~~~~~I-~~s~i~~gc~I~g~V~nSvIg~~v~Ig~ga~I~nSiI~~~~~Ig~~~~I~---------- 341 (381)
T PRK05293 273 IYSVNPILPPQYIAENAKV-KNSLVVEGCEVYGTVKHSVLFQGVQVGEGSIVKDSVIMPGAKIGENVVIE---------- 341 (381)
T ss_pred EECCCCCCCCEEECCCCEE-ECCEECCCCEEEEEEECCEECCCCEECCCCEEECCEECCCCEECCCCEEE----------
T ss_conf 4146877899298799789-68889079899626754898899899999999778985969999899990----------
Q ss_pred CCCCCCCCCCCCEECCCCCCCCCCCCCCCCCC-CCCCCCCC
Q ss_conf 65311044432000024444544443322222-21111122
Q gi|254780771|r 208 SDIHKIVHIGRVIIQDKVEIGANSAIDRGTID-DTIIGENT 247 (347)
Q Consensus 208 ~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~-~t~Ig~~~ 247 (347)
+.+|+++|.||+|+.+..++.+ +++||+++
T Consensus 342 ----------nsIi~~~~~Ig~~~~~~~~~~~~~~vi~~~~ 372 (381)
T PRK05293 342 ----------RAIIGENAVIGDGVIGVISGIDEVVVIGEGE 372 (381)
T ss_pred ----------EEEECCCCEECCCCEEECCEECCCEEECCCC
T ss_conf ----------1299597999979689577426888989994
No 73
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=99.56 E-value=5.8e-15 Score=99.95 Aligned_cols=122 Identities=26% Similarity=0.395 Sum_probs=83.9
Q ss_pred CCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEE-EEEECCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 3442000011001123203311221000000023321002332202331002-442010000023213445433556665
Q gi|254780771|r 131 IEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSS-LIGNSVILHSGVRIGNDGFGYARGVSD 209 (347)
Q Consensus 131 I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~-iIG~~~~I~~~~vIG~~GFgf~~~~~~ 209 (347)
.-+++.|.|.+.|-.++.|++|+++++.++|-=|+.++..|.|..++++..| +||++|.|+.|++|+.- . .+
T Consensus 105 ~~~g~RI~p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GV----L-ep-- 177 (271)
T COG2171 105 VPEGVRIVPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGV----L-EP-- 177 (271)
T ss_pred CCCCEEECCCCEEEECCEECCCCEECCCCEEEECCCCCCCEEEEEEEEEECCEEECCCCCCCCCCEEEEE----E-CC--
T ss_conf 5576363676477605287799387555668777602752589615655131797998452786367677----3-48--
Q ss_pred CCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEECCCCEEEECC
Q ss_conf 31104443200002444454444332222221111122211123444465035771886555650363656972973068
Q gi|254780771|r 210 IHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQC 289 (347)
Q Consensus 210 ~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~v~i~hn~~iG~~~~~~~~~~~~g~~~ig~~~~ig~~~ 289 (347)
+|-. -+.|||+|+||.++
T Consensus 178 ----~~a~----------------------------------------------------------Pv~IgdncliGAns 195 (271)
T COG2171 178 ----LQAN----------------------------------------------------------PVIIGDNCLIGANS 195 (271)
T ss_pred ----CCCC----------------------------------------------------------CEEECCCCEECCCC
T ss_conf ----8878----------------------------------------------------------86987761862453
Q ss_pred EEECCEEECCCCEECCCCEEEEEECCCCEEEE
Q ss_conf 78378598888898625326000079878998
Q gi|254780771|r 290 GIAGYLKIGDNVQIASKSGVLKDIPAGQQYGG 321 (347)
Q Consensus 290 ~i~~~v~ig~~~~i~a~s~v~~~v~~~~~~~G 321 (347)
-+..++.+|++|+|+||..|++|+|.+....|
T Consensus 196 ~~veGV~vGdg~VV~aGv~I~~~tki~~~~~g 227 (271)
T COG2171 196 EVVEGVIVGDGCVVAAGVFITQDTKIYDRVAG 227 (271)
T ss_pred CEEEEEEECCCCEEECCEEEECCCCEEEEECC
T ss_conf 34861696789688545089379514774346
No 74
>KOG1461 consensus
Probab=99.56 E-value=3.3e-15 Score=101.29 Aligned_cols=84 Identities=36% Similarity=0.513 Sum_probs=56.1
Q ss_pred CCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 33442000011001123203311221000000023321002332202331002442010000023213445433556665
Q gi|254780771|r 130 KIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSD 209 (347)
Q Consensus 130 ~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vIG~~GFgf~~~~~~ 209 (347)
.-++.+++.+.+.++.++.||.++.|+.++.|. |+.||++|.|++|++|.++.|+++|.|+.||.|.
T Consensus 317 Yk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~-NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~------------ 383 (673)
T KOG1461 317 YKSPDVVLSHSVIVGANVVIGAGTKIGSGSKIS-NSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRID------------ 383 (673)
T ss_pred CCCCCCEEHHHCCCCCEEEECCCCCCCCCCEEE-CCEECCCCEECCCEEEEEEEEECCCEECCCCEEE------------
T ss_conf 147401000120124407951454126798555-2266589774574588513662583887886573------------
Q ss_pred CCCCCCCCCCEECCCCCCCCCCCCC
Q ss_conf 3110444320000244445444433
Q gi|254780771|r 210 IHKIVHIGRVIIQDKVEIGANSAID 234 (347)
Q Consensus 210 ~~~~~~~G~v~Ig~~v~IG~n~tId 234 (347)
.-+|+|+|.|++++.+.
T Consensus 384 --------~aii~d~v~i~~~~~l~ 400 (673)
T KOG1461 384 --------HAIICDDVKIGEGAILK 400 (673)
T ss_pred --------EEEEECCCEECCCCCCC
T ss_conf --------46860583767884407
No 75
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.53 E-value=2e-14 Score=97.04 Aligned_cols=118 Identities=31% Similarity=0.381 Sum_probs=77.9
Q ss_pred CCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEE-EEEECCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 442000011001123203311221000000023321002332202331002-4420100000232134454335566653
Q gi|254780771|r 132 EDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSS-LIGNSVILHSGVRIGNDGFGYARGVSDI 210 (347)
Q Consensus 132 ~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~-iIG~~~~I~~~~vIG~~GFgf~~~~~~~ 210 (347)
..++.+=|++++-.++.|+.|++++| ++|.=++.+|+++.|...+++..| .||+||+|..|+.||.-
T Consensus 94 ~~gvRvVP~a~vR~Gayi~~~vVlMP-s~VNiGAyv~~gtmiDtwatvGScAqiGknvhls~g~gigGv----------- 161 (265)
T PRK11830 94 EAGVRVVPGAVVRRGAYIAKNVVLMP-SYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGV----------- 161 (265)
T ss_pred HCCEEECCCCEEEECEEECCCCEEEE-EEEEEEEEECCCCEEECCCCEECHHEECCCEEECCCCEEEEE-----------
T ss_conf 67908878853760305459958864-177760398489548047624115323783368787414265-----------
Q ss_pred CCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEECCCC
Q ss_conf 1104443200002444454444332222221111122211123444465035771886555650363656972
Q gi|254780771|r 211 HKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNV 283 (347)
Q Consensus 211 ~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~v~i~hn~~iG~~~~~~~~~~~~g~~~ig~~~ 283 (347)
+.=+|..-|+|+|+|.||++|-|- -.|.++++++++.++.|..||.|=|..
T Consensus 162 leP~~a~p~iied~~fiGa~~~v~----------------------eGv~v~~~avl~~gv~l~~st~I~D~~ 212 (265)
T PRK11830 162 LEPLQANPVIIEDNCFIGARSEVV----------------------EGVIVEEGAVIGMGVFLGQSTKIYDRE 212 (265)
T ss_pred ECCCCCCCEEEECCCEECCCCEEE----------------------EEEEEECCCEECCEEEECCCCEEEECC
T ss_conf 247667987983682873574796----------------------139994586972104760671678724
No 76
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=2.3e-14 Score=96.77 Aligned_cols=105 Identities=36% Similarity=0.521 Sum_probs=77.4
Q ss_pred EEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00110011232033112210000000233210023322023310024420100000232134454335566653110444
Q gi|254780771|r 137 IAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHI 216 (347)
Q Consensus 137 I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vIG~~GFgf~~~~~~~~~~~~~ 216 (347)
+.. +.|...+.||++|.|++++.|++++.||++|.|+.++.|.+++|.++|.|+.++.|+
T Consensus 253 ~~~-~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~------------------- 312 (358)
T COG1208 253 IRS-AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIG------------------- 312 (358)
T ss_pred CCC-EEEECCEEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEEECCCEECCCCEEC-------------------
T ss_conf 662-388589498269789888486898789999888998778754887787988888882-------------------
Q ss_pred CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEECCCCEEEECCEEECCEE
Q ss_conf 32000024444544443322222211111222111234444650357718865556503636569729730687837859
Q gi|254780771|r 217 GRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLK 296 (347)
Q Consensus 217 G~v~Ig~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~v~i~hn~~iG~~~~~~~~~~~~g~~~ig~~~~ig~~~~i~~~v~ 296 (347)
..+|+++|.||+ + + . +|| +.+|.++.+.++++
T Consensus 313 -~sIi~~~~~ig~-~---------------------------------~-~-----------i~d-~~~g~~~~i~~g~~ 344 (358)
T COG1208 313 -DSIIGENCKIGA-S---------------------------------L-I-----------IGD-VVIGINSEILPGVV 344 (358)
T ss_pred -CEEECCCCEECC-C---------------------------------C-E-----------EEE-EEECCCEEECCCEE
T ss_conf -069818859998-6---------------------------------1-5-----------701-58636608627618
Q ss_pred ECCCCEECCCCEE
Q ss_conf 8888898625326
Q gi|254780771|r 297 IGDNVQIASKSGV 309 (347)
Q Consensus 297 ig~~~~i~a~s~v 309 (347)
++.++.+..++.+
T Consensus 345 ~~~~~~~~~~~~~ 357 (358)
T COG1208 345 VGPGSVVESGEIE 357 (358)
T ss_pred ECCCCCCCCCCCC
T ss_conf 4786061576303
No 77
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.47 E-value=1.5e-14 Score=97.69 Aligned_cols=102 Identities=28% Similarity=0.380 Sum_probs=69.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCC
Q ss_conf 23557654333100156532334420000110011232033112210000000233210023322023310024420100
Q gi|254780771|r 110 MEASSFEGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVI 189 (347)
Q Consensus 110 ~~~~~~~~~I~~~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~ 189 (347)
.....+.+.+.+.+.|++++.|.+++.|++++.||+++.|..++.|++.|.|++++.|+.++.|..++. ||++|.
T Consensus 84 ~niIhp~a~i~~~~~ig~G~~I~~~~~i~~~~~IG~~~~i~~~~~i~Hd~~ig~~~~i~~~~~i~g~v~-----Ig~~~~ 158 (197)
T cd03360 84 ATLIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVT-----IGEGAF 158 (197)
T ss_pred EEEECCCCEECCCCEECCCCEEECCCEECCCCCCCCEEEECCCHHCCCCCCCCCCCEECCCEEECCCEE-----EEEECC
T ss_conf 899999959877747999429931759865653043689877001053150131010667236778308-----912162
Q ss_pred CCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCC
Q ss_conf 0002321344543355666531104443200002444454444332
Q gi|254780771|r 190 LHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDR 235 (347)
Q Consensus 190 I~~~~vIG~~GFgf~~~~~~~~~~~~~G~v~Ig~~v~IG~n~tIdr 235 (347)
|+++++|- -++.||+++.||+++++-|
T Consensus 159 iG~~~~i~-------------------~~i~Ig~~~~igags~v~~ 185 (197)
T cd03360 159 IGAGATII-------------------QGVTIGAGAIIGAGAVVTK 185 (197)
T ss_pred CCCCCEEC-------------------CCCEECCCCEECCCCEEEE
T ss_conf 98998987-------------------9989999999997998912
No 78
>KOG1461 consensus
Probab=99.46 E-value=6.1e-14 Score=94.44 Aligned_cols=71 Identities=34% Similarity=0.500 Sum_probs=48.1
Q ss_pred CCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf 23203311221000000023321002332202331002442010000023213445433556665311044432000024
Q gi|254780771|r 145 PGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDK 224 (347)
Q Consensus 145 ~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vIG~~GFgf~~~~~~~~~~~~~G~v~Ig~~ 224 (347)
.++.-+..+++.+.+.++.++.||.++.|+.++.|.|++||.+|.|++|++|- +-.|+++
T Consensus 314 ~~IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~--------------------~S~iw~~ 373 (673)
T KOG1461 314 RNIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIK--------------------NSFIWNN 373 (673)
T ss_pred CCCCCCCCCEEHHHCCCCCEEEECCCCCCCCCCEEECCEECCCCEECCCEEEE--------------------EEEEECC
T ss_conf 44014740100012012440795145412679855522665897745745885--------------------1366258
Q ss_pred CCCCCCCCCCC
Q ss_conf 44454444332
Q gi|254780771|r 225 VEIGANSAIDR 235 (347)
Q Consensus 225 v~IG~n~tIdr 235 (347)
|.||.||-|++
T Consensus 374 v~Igdnc~I~~ 384 (673)
T KOG1461 374 VTIGDNCRIDH 384 (673)
T ss_pred CEECCCCEEEE
T ss_conf 38878865734
No 79
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.45 E-value=2.6e-13 Score=91.05 Aligned_cols=102 Identities=27% Similarity=0.349 Sum_probs=61.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCC
Q ss_conf 23557654333100156532334420000110011232033112210000000233210023322023310024420100
Q gi|254780771|r 110 MEASSFEGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVI 189 (347)
Q Consensus 110 ~~~~~~~~~I~~~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~ 189 (347)
.....+.+.|++++.|++++.|.+++.|++++.||+++.|..+|.|++.|.|++++.|+.++.++.++. ||++|.
T Consensus 87 ~~lIhp~a~i~~~~~ig~G~~I~~~~~i~~~~~IG~~~~i~~~~~I~Hd~~ig~~~~i~~~~~i~G~v~-----Ig~~~~ 161 (201)
T TIGR03570 87 ATLIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVV-----IGEGVF 161 (201)
T ss_pred EEEECCCCEECCCCEECCCCEEECCCEECCCCEEEEEEEECCCCCCCCCCEECCCCEECCCCEECCCCE-----ECCCCE
T ss_conf 899999809889867879989962869876647802679804232144254778768999859989887-----977735
Q ss_pred CCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCC
Q ss_conf 0002321344543355666531104443200002444454444332
Q gi|254780771|r 190 LHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDR 235 (347)
Q Consensus 190 I~~~~vIG~~GFgf~~~~~~~~~~~~~G~v~Ig~~v~IG~n~tIdr 235 (347)
|+.+++|- -++.||+++.||+++++-|
T Consensus 162 iG~~~~i~-------------------~~i~Ig~~~~Igags~V~~ 188 (201)
T TIGR03570 162 IGAGATII-------------------QGVTIGAGAIVGAGAVVTK 188 (201)
T ss_pred ECCCCEEC-------------------CCCEECCCCEECCCCEEEC
T ss_conf 98988988-------------------9989999999997988904
No 80
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=99.45 E-value=1.2e-13 Score=92.80 Aligned_cols=35 Identities=49% Similarity=0.608 Sum_probs=33.0
Q ss_pred CCEECCCCEEEECCEEECCEEECCCCEECCCCEEE
Q ss_conf 63656972973068783785988888986253260
Q gi|254780771|r 276 STYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVL 310 (347)
Q Consensus 276 ~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~ 310 (347)
.++|||+||||.++.++++++||++++|+|+|+||
T Consensus 44 ~~~Ig~~v~Ig~~a~I~~gv~IGdn~~IgagavVt 78 (78)
T cd00208 44 PTIIGDNVEIGANAVIHGGVKIGDNAVIGAGAVVT 78 (78)
T ss_pred CCEECCCEEECCCCEEECCEEECCCCEECCCCEEC
T ss_conf 98999996998689897981999999999885699
No 81
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.42 E-value=5.6e-14 Score=94.63 Aligned_cols=65 Identities=25% Similarity=0.304 Sum_probs=37.3
Q ss_pred CCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEC
Q ss_conf 565323344200001100112320331122100000002332100233220233100244201000002321
Q gi|254780771|r 125 LGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRI 196 (347)
Q Consensus 125 I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vI 196 (347)
|+|+|+|++++.|||+++||++|+||++|+| .+|+|.++++|+ +++.+.+++||++|.|++.+.+
T Consensus 2 Idpsa~Ig~~~~IGp~vvIG~nv~IG~gv~I-~~~vI~~~~~I~------~~s~i~~siIG~~~~iG~~~ri 66 (80)
T cd05824 2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRL-QRCVILSNSTVR------DHSWVKSSIVGWNSTVGRWTRL 66 (80)
T ss_pred CCCCCEECCCCEECCCCEECCCCEECCCCEE-EEEEEECCCEEC------CCCEEECCEECCCCCCCCCEEE
T ss_conf 3787898999999998589999999999799-730895789998------9869978998579704894036
No 82
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.38 E-value=2.6e-13 Score=91.03 Aligned_cols=35 Identities=29% Similarity=0.212 Sum_probs=13.8
Q ss_pred EECCCCEEEECCEEECCEEECCCCEECCCCEEEEEE
Q ss_conf 656972973068783785988888986253260000
Q gi|254780771|r 278 YIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDI 313 (347)
Q Consensus 278 ~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~v 313 (347)
+||++|.||.++.+. ..++++.++|+-++.|..|+
T Consensus 344 Ii~~~~~Ig~~~~~~-~~~~~~~~vi~~~~~~~~~~ 378 (381)
T PRK05293 344 IIGENAVIGDGVIGV-ISGIDEVVVIGEGEVVGVDK 378 (381)
T ss_pred EECCCCEECCCCEEE-CCEECCCEEECCCCEECCCC
T ss_conf 995979999796895-77426888989994889763
No 83
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.37 E-value=2.1e-13 Score=91.48 Aligned_cols=71 Identities=25% Similarity=0.470 Sum_probs=34.2
Q ss_pred CCCCCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCC-----CCCCCCCCCCEEEEEEE-EEEEECCCC
Q ss_conf 3310015653233442000011001123203311221000000023-----32100233220233100-244201000
Q gi|254780771|r 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAG-----VRIGRNCSIGAGSSIYS-SLIGNSVIL 190 (347)
Q Consensus 119 I~~~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~-----~~IG~~~~I~~~~~I~~-~iIG~~~~I 190 (347)
|||+|.|+++++|++++.|||++.||++|+| .+++|..++.|+++ +.||.+|.|++++.+++ ++||+++.|
T Consensus 2 Idpsa~Ig~~~~IGp~vvIG~nv~IG~gv~I-~~~vI~~~~~I~~~s~i~~siIG~~~~iG~~~ri~~~~viGd~v~I 78 (80)
T cd05824 2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRL-QRCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLENVTVLGDDVTI 78 (80)
T ss_pred CCCCCEECCCCEECCCCEECCCCEECCCCEE-EEEEEECCCEECCCCEEECCEECCCCCCCCCEEECCCCEECCCCEE
T ss_conf 3787898999999998589999999999799-7308957899989869978998579704894036586298898698
No 84
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.36 E-value=9.7e-13 Score=87.91 Aligned_cols=81 Identities=25% Similarity=0.379 Sum_probs=70.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECC--------CEECCCCEEEECCEEECCEEECCCCEECCCCEEEE--
Q ss_conf 11112221112344446503577188655565036--------36569729730687837859888889862532600--
Q gi|254780771|r 242 IIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGS--------TYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLK-- 311 (347)
Q Consensus 242 ~Ig~~~~id~~v~i~hn~~iG~~~~~~~~~~~~g~--------~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~-- 311 (347)
.+|++|++|...++|.=.+||++|-+.+.++|+|- +.|+|+|+||+.+.+..++.|++++++++|..+++
T Consensus 127 yv~~gtmiDtwatvGScAqiGknvhls~g~gigGvleP~~a~p~iied~~fiGa~~~v~eGv~v~~~avl~~gv~l~~st 206 (265)
T PRK11830 127 YVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEEGAVIGMGVFLGQST 206 (265)
T ss_pred EECCCCEEECCCCEECHHEECCCEEECCCCEEEEEECCCCCCCEEEECCCEECCCCEEEEEEEEECCCEECCEEEECCCC
T ss_conf 98489548047624115323783368787414265247667987983682873574796139994586972104760671
Q ss_pred -------------EECCCCEE-EEE
Q ss_conf -------------00798789-982
Q gi|254780771|r 312 -------------DIPAGQQY-GGM 322 (347)
Q Consensus 312 -------------~v~~~~~~-~G~ 322 (347)
.+|+++++ .|+
T Consensus 207 ~I~D~~~~ev~~g~vP~~svvv~Gs 231 (265)
T PRK11830 207 KIYDRETGEVHYGRVPAGSVVVPGS 231 (265)
T ss_pred EEEECCCCCEEECCCCCCCEEECCC
T ss_conf 6787247828743479998895574
No 85
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.34 E-value=7.8e-13 Score=88.42 Aligned_cols=65 Identities=17% Similarity=0.419 Sum_probs=33.7
Q ss_pred CCCEEHHHCCC----CCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCCC
Q ss_conf 20000110011----2320331122100000002332100233220233100244201000002321344
Q gi|254780771|r 134 GVVIAPMAVVY----PGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGND 199 (347)
Q Consensus 134 ~v~I~~~~~I~----~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vIG~~ 199 (347)
++.|+++|+|+ ++++||.+|.|++++.|. |+.|.++|.|+.+++|.+++|+++|.|++|++||.+
T Consensus 315 ~s~I~~g~~I~g~~V~nSvIg~~v~Ig~ga~I~-nSII~~~~~Ig~~a~I~~sIidk~v~Ig~gt~I~~~ 383 (409)
T PRK00844 315 DSIVSAGSIISGGSVRNSVLSPNVRVDSGAIVE-GSVLMDGVRIGRGAVVRRAILDKNVVVPPGTQIGVD 383 (409)
T ss_pred CCEECCCEEEECCEEECCEECCCCEECCCCEEE-CCEEECCCEECCCCEEEEEEECCCCEECCCCEECCC
T ss_conf 588879709969988888977998999998995-189929499999999980198999898999898978
No 86
>PRK10502 putative colanic acid biosynthesis acetyltransferase WcaF; Provisional
Probab=99.32 E-value=2e-12 Score=86.16 Aligned_cols=52 Identities=31% Similarity=0.505 Sum_probs=27.1
Q ss_pred CCCCCCCCCEEHHHCCC--CCCEEEECCCCCCCCHHC--CCCCCCCCCCCCEEEEE
Q ss_conf 32334420000110011--232033112210000000--23321002332202331
Q gi|254780771|r 128 DVKIEDGVVIAPMAVVY--PGVEIGRKTYVGPGSVIG--AGVRIGRNCSIGAGSSI 179 (347)
Q Consensus 128 ~a~I~~~v~I~~~~~I~--~~v~IG~~~~I~~~~~I~--~~~~IG~~~~I~~~~~I 179 (347)
.|+|++++.|.|.+.|. -+.+||++|.|+++|.|. ..++||++|.|++++.|
T Consensus 52 GAkIG~~v~I~p~v~I~~PwnL~IGd~~~Ig~~v~i~~~~~I~IG~~v~Isq~v~l 107 (179)
T PRK10502 52 GAKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVVLYTLGEITIGAHCVISQKSYL 107 (179)
T ss_pred CCEECCCCEECCCCEEEECCCEEECCCCEECCCCEEEECCCCEECCCEEECCCCEE
T ss_conf 88679998899965795043079889657889818984896179884127797189
No 87
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.30 E-value=8.1e-13 Score=88.34 Aligned_cols=47 Identities=43% Similarity=0.678 Sum_probs=27.6
Q ss_pred EEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEC
Q ss_conf 331122100000002332100233220233100244201000002321
Q gi|254780771|r 149 IGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRI 196 (347)
Q Consensus 149 IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vI 196 (347)
||+++.|+++++|. ++.||++|+|++++.|.+++|++++.|+++++|
T Consensus 2 IG~~t~Ig~~~~I~-~svIG~nc~Ig~~~~I~~svi~d~~~Ig~~~~i 48 (79)
T cd05787 2 IGRGTSIGEGTTIK-NSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTI 48 (79)
T ss_pred CCCCCEECCCCEEE-CCEECCCCEECCCCEEECCEEECCCEECCCCEE
T ss_conf 99989999999995-999899999999988948999197899999999
No 88
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=99.30 E-value=3.6e-12 Score=84.83 Aligned_cols=125 Identities=20% Similarity=0.269 Sum_probs=57.1
Q ss_pred CCCCCCCCEEHHHCCC----CCCEEEECCCCCCCCHHC--CCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCCCCCC
Q ss_conf 2334420000110011----232033112210000000--2332100233220233100244201000002321344543
Q gi|254780771|r 129 VKIEDGVVIAPMAVVY----PGVEIGRKTYVGPGSVIG--AGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFG 202 (347)
Q Consensus 129 a~I~~~v~I~~~~~I~----~~v~IG~~~~I~~~~~I~--~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vIG~~GFg 202 (347)
..+++++.+++.|.++ ...+||+||.|+++|.|. .+++||++|.|+++|.|.+ ...+
T Consensus 44 I~~g~~~~~g~~~rl~~~~~gkl~IGdNv~Ig~~~~I~~~~~I~IG~nVlIa~~V~I~d-----------------~nH~ 106 (192)
T PRK09677 44 INFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITD-----------------HNHG 106 (192)
T ss_pred EEECCCEEECCCEEEEEECCCEEEECCCCEECCCCEEEECCCEEECCCCEECCCEEEEC-----------------CCCC
T ss_conf 68789619668779997067508999984899985898677679899868879889967-----------------8887
Q ss_pred CCCCCC--CCCCCC------CCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEE
Q ss_conf 355666--531104------443200002444454444332222221111122211123444465035771886555650
Q gi|254780771|r 203 YARGVS--DIHKIV------HIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIA 274 (347)
Q Consensus 203 f~~~~~--~~~~~~------~~G~v~Ig~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~v~i~hn~~iG~~~~~~~~~~~~ 274 (347)
+..... ....+| ..+.|+|||+|.||+|++|-
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~pv~Ig~~~wIg~~~~Il---------------------------------------- 146 (192)
T PRK09677 107 SFKHSDDFSSPNLPPDMRTLESSAVVIGQRVWIGENVTIL---------------------------------------- 146 (192)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEECCCCEEE----------------------------------------
T ss_conf 6555454345676821266775998989998999999991----------------------------------------
Q ss_pred CCCEECCCCEEEECCEEECCEEECCCCEECCC-CEEEEE
Q ss_conf 36365697297306878378598888898625-326000
Q gi|254780771|r 275 GSTYIGDNVLIGGQCGIAGYLKIGDNVQIASK-SGVLKD 312 (347)
Q Consensus 275 g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~-s~v~~~ 312 (347)
..++||++|++|++|.+... +.+++++++. +.+.|-
T Consensus 147 ~Gv~Ig~~~vvgA~SvV~~d--vp~~~i~~G~PAk~Ik~ 183 (192)
T PRK09677 147 PGVSIGNGCIVGANSVVTKS--IPENTVIAGNPAKIIKK 183 (192)
T ss_pred CCCEECCCCEECCCCEECCC--CCCCEEEEEECCEEEEE
T ss_conf 99699999899169999858--59991999708388971
No 89
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function; InterPro: IPR012728 This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size..
Probab=99.30 E-value=1.3e-12 Score=87.16 Aligned_cols=84 Identities=27% Similarity=0.439 Sum_probs=71.3
Q ss_pred CCCCCCCCCCC-------CCCCCCCCCCCCCEEEEEE-----EEEECCCEECCCCEEEECCEEECCEEECCCCEECCCCE
Q ss_conf 11111222111-------2344446503577188655-----56503636569729730687837859888889862532
Q gi|254780771|r 241 TIIGENTKIDN-------QVQIGHNVHIGCGCIIVSQ-----VGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSG 308 (347)
Q Consensus 241 t~Ig~~~~id~-------~v~i~hn~~iG~~~~~~~~-----~~~~g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~ 308 (347)
..||++|++|. ||.||.++.++++|.+=.+ +...-.++|||+|.||..+.++.++.||+++.++..|.
T Consensus 622 ~kiGr~v~~d~~~ltE~dLv~IG~d~tlN~G~~~QtHlfeDRv~k~D~v~igdgatlG~~aiVlY~~~~G~~a~lgp~Sl 701 (719)
T TIGR02353 622 VKIGRGVYIDTTDLTERDLVTIGDDSTLNEGSVIQTHLFEDRVMKSDTVTIGDGATLGPGAIVLYGAVVGEDAVLGPDSL 701 (719)
T ss_pred CEECCCCEECCCCCCCHHHEEECCCCEECCCCCEECCCCCCCEEEECEEEEECEEEECCCCEECCCEEECCCCEECCCCE
T ss_conf 24555322267567522203656861246875111140006756745289724038888635857315568643468432
Q ss_pred EEE--EECCCCEEEEECC
Q ss_conf 600--0079878998241
Q gi|254780771|r 309 VLK--DIPAGQQYGGMPA 324 (347)
Q Consensus 309 v~~--~v~~~~~~~G~pa 324 (347)
|.| .||+.+.|.||||
T Consensus 702 VMkGE~vP~~trW~GnPa 719 (719)
T TIGR02353 702 VMKGEEVPAHTRWEGNPA 719 (719)
T ss_pred EECCCCCCCCCCCCCCCC
T ss_conf 503552888785888899
No 90
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.29 E-value=3.7e-12 Score=84.79 Aligned_cols=87 Identities=25% Similarity=0.313 Sum_probs=45.0
Q ss_pred CCCCCCEEHHHC--CCCCCEEEECCCCCCCCHHCC--CCCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCCCCCCCCCC
Q ss_conf 344200001100--112320331122100000002--3321002332202331002442010000023213445433556
Q gi|254780771|r 131 IEDGVVIAPMAV--VYPGVEIGRKTYVGPGSVIGA--GVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARG 206 (347)
Q Consensus 131 I~~~v~I~~~~~--I~~~v~IG~~~~I~~~~~I~~--~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vIG~~GFgf~~~ 206 (347)
+++++.|.|.-. -|.+..||+++.|+.+|++.+ .++||++|.|+|+|.|+..- +++ +
T Consensus 45 ~g~~~~I~~pf~~dyG~ni~iG~~~~in~n~~ild~~~I~IG~~v~igp~v~i~t~~---------------H~~----d 105 (169)
T cd03357 45 VGENVYIEPPFHCDYGYNIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTAG---------------HPL----D 105 (169)
T ss_pred CCCCCEEECCEEEECCCCEEECCEEEECCCCEEEECCCEEECCCEEECCCCEEECCC---------------CCC----C
T ss_conf 899958978889834367798884488788489706887999980787985897689---------------999----9
Q ss_pred CCCCCCCCCCC-CCEECCCCCCCCCCCCCCC
Q ss_conf 66531104443-2000024444544443322
Q gi|254780771|r 207 VSDIHKIVHIG-RVIIQDKVEIGANSAIDRG 236 (347)
Q Consensus 207 ~~~~~~~~~~G-~v~Ig~~v~IG~n~tIdrg 236 (347)
......-...+ -++|||+|+||+|++|-.|
T Consensus 106 ~~~r~~~~~~~~PI~Igd~vWIG~~~~IlpG 136 (169)
T cd03357 106 PEERNRGLEYAKPITIGDNVWIGGGVIILPG 136 (169)
T ss_pred HHHHHCCCCCCCCEEECCCCEECCCCEEECC
T ss_conf 7896346652455698974362899789099
No 91
>PRK03282 consensus
Probab=99.26 E-value=3.9e-12 Score=84.61 Aligned_cols=50 Identities=18% Similarity=0.452 Sum_probs=23.6
Q ss_pred CEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEECC
Q ss_conf 203311221000000023321002332202331002442010000023213
Q gi|254780771|r 147 VEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIG 197 (347)
Q Consensus 147 v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vIG 197 (347)
++||.+|.|++++.| .++.|.++|.|++++.|.+++|+++|.|++|++||
T Consensus 330 SvIg~~v~Ig~ga~I-~~SIIm~~~~Ig~~a~l~~~Iidk~v~Ig~g~~Ig 379 (406)
T PRK03282 330 SVLSPNVVVDSGAIV-EGSVLMPGVRIGRGAVVRHAILDKNVVVPPGAMVG 379 (406)
T ss_pred CEECCCCEECCCCEE-ECCEEECCCEECCCCEEECCEECCCCEECCCCEEC
T ss_conf 997899899999899-70889096899999999731989999999898999
No 92
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY; InterPro: IPR011974 Members of this family are located next to other genes organised into apparent operons for phenylacetic acid degradation . PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator..
Probab=99.26 E-value=5.7e-12 Score=83.76 Aligned_cols=125 Identities=14% Similarity=0.264 Sum_probs=76.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEHHHCCCCCC---------EEEECCCCCCCCHHC----CCCCCCCCCCCCEEEEEEE
Q ss_conf 654333100156532334420000110011232---------033112210000000----2332100233220233100
Q gi|254780771|r 115 FEGGISPQAFLGEDVKIEDGVVIAPMAVVYPGV---------EIGRKTYVGPGSVIG----AGVRIGRNCSIGAGSSIYS 181 (347)
Q Consensus 115 ~~~~I~~~a~I~~~a~I~~~v~I~~~~~I~~~v---------~IG~~~~I~~~~~I~----~~~~IG~~~~I~~~~~I~~ 181 (347)
..+-+||+|++||+|.+=-+|.||+.|+|++.+ ++.++..|+.+|+.+ .++.+++|-.||++++++.
T Consensus 7 LtPVVhp~ayVHP~AVLiGDVi~G~rcYvgPlASLRGDFGrIvl~eGAN~QD~CVMHGFPg~DTvVeenGHvGHgAiLHg 86 (193)
T TIGR02287 7 LTPVVHPEAYVHPDAVLIGDVIVGKRCYVGPLASLRGDFGRIVLKEGANVQDTCVMHGFPGQDTVVEENGHVGHGAILHG 86 (193)
T ss_pred CCCCCCCCCCCCCCEEEEEEEEECCCCEECCCCCCCCCCCCEEEECCCCCCCCCEECCCCCCCEEEECCCCCCCCEEECC
T ss_conf 84656987734686378621788795246766313577572575348861464243672998867606882332123515
Q ss_pred EEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 24420100000232134454335566653110444320000244445444433222222111112221112344446503
Q gi|254780771|r 182 SLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHI 261 (347)
Q Consensus 182 ~iIG~~~~I~~~~vIG~~GFgf~~~~~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~v~i~hn~~i 261 (347)
|.||+|..|+-|||+
T Consensus 87 C~vgrnaLvGMNAVV----------------------------------------------------------------- 101 (193)
T TIGR02287 87 CRVGRNALVGMNAVV----------------------------------------------------------------- 101 (193)
T ss_pred CEECCCCEECCCEEE-----------------------------------------------------------------
T ss_conf 463252311165066-----------------------------------------------------------------
Q ss_pred CCCEEEEEEEEEECCCEECCCCEEEECCEEECCEEECCCCEECCC-CEEEEEECCC
Q ss_conf 577188655565036365697297306878378598888898625-3260000798
Q gi|254780771|r 262 GCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASK-SGVLKDIPAG 316 (347)
Q Consensus 262 G~~~~~~~~~~~~g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~-s~v~~~v~~~ 316 (347)
=-.++||.+++.++-|.+.++..+..+.+|.+- +.|.|.+-.-
T Consensus 102 ------------MDgAvige~sIVaA~aFVKAg~E~paq~Lv~GsPAkv~R~LseQ 145 (193)
T TIGR02287 102 ------------MDGAVIGERSIVAASAFVKAGAEIPAQVLVVGSPAKVVRELSEQ 145 (193)
T ss_pred ------------ECCCEECCCCCEEHHHHHHCCCCCCCCCEEECCCCEEEECCHHH
T ss_conf ------------16646677412002033434734784612662873055331146
No 93
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.26 E-value=2.1e-12 Score=86.04 Aligned_cols=64 Identities=25% Similarity=0.405 Sum_probs=30.1
Q ss_pred CCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEC
Q ss_conf 344200001100112320331122100000002332100233220233100244201000002321
Q gi|254780771|r 131 IEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRI 196 (347)
Q Consensus 131 I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vI 196 (347)
|++++.|++++.|. +++||+||+|++++.|. ++.|.++++|+++++|.+++|+++|.|++++.|
T Consensus 2 IG~~t~Ig~~~~I~-~svIG~nc~Ig~~~~I~-~svi~d~~~Ig~~~~i~~siI~~~~~Ig~~~~i 65 (79)
T cd05787 2 IGRGTSIGEGTTIK-NSVIGRNCKIGKNVVID-NSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTI 65 (79)
T ss_pred CCCCCEECCCCEEE-CCEECCCCEECCCCEEE-CCEEECCCEECCCCEECCCEECCCCEECCCCEE
T ss_conf 99989999999995-99989999999998894-899919789999999908999798999999999
No 94
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=99.25 E-value=5.6e-12 Score=83.77 Aligned_cols=65 Identities=31% Similarity=0.464 Sum_probs=54.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEE
Q ss_conf 43331001565323344200001100112320331122100000002332100233220233100
Q gi|254780771|r 117 GGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYS 181 (347)
Q Consensus 117 ~~I~~~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~ 181 (347)
..|.|.|.+-..+.|++++++-+.++|-=|+.++.++.|..+.+++.-++||++|.|+.++.|..
T Consensus 109 ~RI~p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~G 173 (271)
T COG2171 109 VRIVPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGG 173 (271)
T ss_pred EEECCCCEEEECCEECCCCEECCCCEEEECCCCCCCEEEEEEEEEECCEEECCCCCCCCCCEEEE
T ss_conf 36367647760528779938755566877760275258961565513179799845278636767
No 95
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.24 E-value=3.8e-12 Score=84.68 Aligned_cols=82 Identities=27% Similarity=0.370 Sum_probs=58.9
Q ss_pred CCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCCCCCCCCCCCC
Q ss_conf 23344200001100112320331122100000002332100233220233100244201000002321344543355666
Q gi|254780771|r 129 VKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVS 208 (347)
Q Consensus 129 a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vIG~~GFgf~~~~~ 208 (347)
+.|++++.|.|+++|+..+.||+++.|+|++.|.+++.||++|.|+. .+.+++|++++.+...+-
T Consensus 12 V~I~~~~~I~~~~~i~Gp~~IG~~~~I~p~a~Ir~~t~Ig~~~~IG~--Eik~S~i~~~s~~~H~~Y------------- 76 (101)
T cd05635 12 IYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGF------------- 76 (101)
T ss_pred EEECCCCEECCCCEEECCEEECCCCEECCCCEEECCCEECCCCEECC--EEEEEEEECCCCCCCCCE-------------
T ss_conf 99879999999999976669999999999978638879999977614--087618857875687758-------------
Q ss_pred CCCCCCCCCCCEECCCCCCCCCCC
Q ss_conf 531104443200002444454444
Q gi|254780771|r 209 DIHKIVHIGRVIIQDKVEIGANSA 232 (347)
Q Consensus 209 ~~~~~~~~G~v~Ig~~v~IG~n~t 232 (347)
+|.-+||++|.|||+++
T Consensus 77 -------lGDS~iG~~vNiGAGT~ 93 (101)
T cd05635 77 -------LGHSYLGSWCNLGAGTN 93 (101)
T ss_pred -------EEEEEECCCCEECCCCE
T ss_conf -------76117838757877857
No 96
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=99.24 E-value=2e-12 Score=86.23 Aligned_cols=17 Identities=59% Similarity=0.804 Sum_probs=12.1
Q ss_pred CCEECCCCCCCCCCCCC
Q ss_conf 20000244445444433
Q gi|254780771|r 218 RVIIQDKVEIGANSAID 234 (347)
Q Consensus 218 ~v~Ig~~v~IG~n~tId 234 (347)
.++|||+|+||+|++|.
T Consensus 44 ~~~Ig~~v~Ig~~a~I~ 60 (78)
T cd00208 44 PTIIGDNVEIGANAVIH 60 (78)
T ss_pred CCEECCCEEECCCCEEE
T ss_conf 98999996998689897
No 97
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function; InterPro: IPR012728 This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size..
Probab=99.22 E-value=1.3e-11 Score=81.81 Aligned_cols=105 Identities=29% Similarity=0.294 Sum_probs=71.0
Q ss_pred CCEECCCCCCCCCCCCCCC-CC-CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEECCCCEEEECCEEECCE
Q ss_conf 2000024444544443322-22-221111122211123444465035771886555650363656972973068783785
Q gi|254780771|r 218 RVIIQDKVEIGANSAIDRG-TI-DDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYL 295 (347)
Q Consensus 218 ~v~Ig~~v~IG~n~tIdrg-~~-~~t~Ig~~~~id~~v~i~hn~~iG~~~~~~~~~~~~g~~~ig~~~~ig~~~~i~~~v 295 (347)
+..||.++||++|=--+-- .. .=|-||+++.|-+-+.++ |.+++.+ ...-+.|+||++.+||-+....++-
T Consensus 370 G~~igk~~eissNFG~~~~~~~P~L~~iG~etfiAD~~~~g-~~~~~~g------~~~~~~t~iG~RsFlGNs~~~p~g~ 442 (719)
T TIGR02353 370 GAKIGKDAEISSNFGSEAQHEVPDLTDIGEETFIADAVLLG-NAELSGG------WMRLGRTRIGRRSFLGNSGYYPPGA 442 (719)
T ss_pred CCCCCCEEEECCCCCCCHHHCCCCCCCCCCCHHHHHHHHEE-CCCCCCC------EEEEECCEECCCCEEECCEECCCCC
T ss_conf 76005703623454240220024300137742232133100-3215874------2685043004513001660369868
Q ss_pred EECCCCEECCCCEEEEEECCCC---EEEEECCHHHHH
Q ss_conf 9888889862532600007987---899824175888
Q gi|254780771|r 296 KIGDNVQIASKSGVLKDIPAGQ---QYGGMPARPIGE 329 (347)
Q Consensus 296 ~ig~~~~i~a~s~v~~~v~~~~---~~~G~pa~~~~~ 329 (347)
+++||+.||-.|.+-+|=+..+ .|.|+|+..+..
T Consensus 443 ~~~dnvL~gv~s~~P~dg~~~~~Dv~wlGSPp~~lPr 479 (719)
T TIGR02353 443 KLADNVLIGVLSMTPKDGKVREGDVTWLGSPPIELPR 479 (719)
T ss_pred EECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEECCE
T ss_conf 7078625766633778887668886643688600450
No 98
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=5e-12 Score=84.05 Aligned_cols=87 Identities=38% Similarity=0.452 Sum_probs=63.9
Q ss_pred CCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCCCCCC
Q ss_conf 01565323344200001100112320331122100000002332100233220233100244201000002321344543
Q gi|254780771|r 123 AFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFG 202 (347)
Q Consensus 123 a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vIG~~GFg 202 (347)
+.+.+.+.|++++.|++++.|+++++||+||.|+.++.| .++.|.++|.|++++.+.+++||++|.|++ +
T Consensus 256 ~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i-~~Sii~~~~~i~~~~~i~~sIi~~~~~ig~-~-------- 325 (358)
T COG1208 256 AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEI-KNSIIMDNVVIGHGSYIGDSIIGENCKIGA-S-------- 325 (358)
T ss_pred EEEECCEEECCCCEECCCCEECCCCEECCCCEECCCCEE-EEEEEECCCEECCCCEECCEEECCCCEECC-C--------
T ss_conf 388589498269789888486898789999888998778-754887787988888882069818859998-6--------
Q ss_pred CCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCC
Q ss_conf 3556665311044432000024444544443322
Q gi|254780771|r 203 YARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRG 236 (347)
Q Consensus 203 f~~~~~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg 236 (347)
. .++| +.+|.++.+.+|
T Consensus 326 ---------------~-~i~d-~~~g~~~~i~~g 342 (358)
T COG1208 326 ---------------L-IIGD-VVIGINSEILPG 342 (358)
T ss_pred ---------------C-EEEE-EEECCCEEECCC
T ss_conf ---------------1-5701-586366086276
No 99
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=99.22 E-value=4.3e-12 Score=84.41 Aligned_cols=16 Identities=44% Similarity=0.549 Sum_probs=9.0
Q ss_pred CCEECCCCCCCCCCCC
Q ss_conf 2000024444544443
Q gi|254780771|r 218 RVIIQDKVEIGANSAI 233 (347)
Q Consensus 218 ~v~Ig~~v~IG~n~tI 233 (347)
.++|||+|.||+|++|
T Consensus 54 ~~~Ig~~v~IG~~~~I 69 (101)
T cd03354 54 HPTIGDNVVIGAGAKI 69 (101)
T ss_pred CCCCCCCEEECCCCEE
T ss_conf 7614875863589889
No 100
>PRK04928 consensus
Probab=99.21 E-value=7.8e-12 Score=83.02 Aligned_cols=66 Identities=29% Similarity=0.408 Sum_probs=42.1
Q ss_pred CCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 32033112210000000233210023322023310024420100000232134454335566653110444320000244
Q gi|254780771|r 146 GVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKV 225 (347)
Q Consensus 146 ~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vIG~~GFgf~~~~~~~~~~~~~G~v~Ig~~v 225 (347)
++.|+++|+|. ++.|. ++.||++|.|+++++|.+|+|+++|.|++||.|. +++|+++|
T Consensus 311 ~s~I~~G~~I~-G~~I~-~SvIg~~~~Ig~ga~I~nSII~~~~~Ig~ga~i~--------------------~sIidk~v 368 (405)
T PRK04928 311 DSLISGGSYIR-GSRIE-KSVLGFRSNIASACDISESVLLGDVKIGEGCVLR--------------------RVIIDKDV 368 (405)
T ss_pred CCEECCCCEEE-CCEEE-CCEECCCCEECCCCEEECCEEECCCEECCCCEEE--------------------CCEECCCC
T ss_conf 66887887898-99987-6897699899999499558996929999999996--------------------54988999
Q ss_pred CCCCCCCC
Q ss_conf 44544443
Q gi|254780771|r 226 EIGANSAI 233 (347)
Q Consensus 226 ~IG~n~tI 233 (347)
.||+|+.|
T Consensus 369 ~Ig~g~~I 376 (405)
T PRK04928 369 EIAPGTQI 376 (405)
T ss_pred EECCCCEE
T ss_conf 99999999
No 101
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=99.20 E-value=5.3e-12 Score=83.91 Aligned_cols=18 Identities=39% Similarity=0.717 Sum_probs=8.2
Q ss_pred CCCCEECCCCCCCCCCCC
Q ss_conf 432000024444544443
Q gi|254780771|r 216 IGRVIIQDKVEIGANSAI 233 (347)
Q Consensus 216 ~G~v~Ig~~v~IG~n~tI 233 (347)
+|...|||++.||||+.+
T Consensus 135 LG~I~IGd~a~IGA~sVV 152 (194)
T COG1045 135 LGNIEIGDNAKIGAGSVV 152 (194)
T ss_pred ECCEEECCCCEECCCCEE
T ss_conf 716688789788878668
No 102
>PRK10191 putative colanic acid biosynthesis acetyltransferase WcaB; Provisional
Probab=99.19 E-value=6.5e-12 Score=83.43 Aligned_cols=83 Identities=27% Similarity=0.371 Sum_probs=38.9
Q ss_pred CCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCCCCCCCC
Q ss_conf 56532334420000110011232033112210000000233210023322023310024420100000232134454335
Q gi|254780771|r 125 LGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYA 204 (347)
Q Consensus 125 I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vIG~~GFgf~ 204 (347)
|++.++||++.+|... .+++||+.+.|+.+|.|.++|+||..-. .....-+||++|.|++|++|
T Consensus 44 I~p~a~IG~gl~I~H~----~GiVIg~~~~IG~n~~I~q~VTiG~~~~----~~~~~P~Ig~~V~Igaga~I-------- 107 (146)
T PRK10191 44 IQAAATIGRRFTIHHG----YAVVINKNVVAGDDFTIRHGVTIGNRGA----DNMACPHIGNGVELGANVII-------- 107 (146)
T ss_pred ECCCCEECCCEEEECC----EEEEECCCEEECCCEEEECCEEECCCCC----CCCCCCEECCCEEEECCCEE--------
T ss_conf 0899887898798378----2589999719899809948878888678----77898987999599289999--------
Q ss_pred CCCCCCCCCCCCCCCEECCCCCCCCCCCCC
Q ss_conf 566653110444320000244445444433
Q gi|254780771|r 205 RGVSDIHKIVHIGRVIIQDKVEIGANSAID 234 (347)
Q Consensus 205 ~~~~~~~~~~~~G~v~Ig~~v~IG~n~tId 234 (347)
+|.+.|||+|.||||+.+.
T Consensus 108 -----------lG~i~IG~~~~IGA~svV~ 126 (146)
T PRK10191 108 -----------LGDITLGNNVTVGAGSVVL 126 (146)
T ss_pred -----------ECCCEECCCCEECCCCEEC
T ss_conf -----------6485999999999895897
No 103
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.19 E-value=8.1e-11 Score=77.49 Aligned_cols=42 Identities=12% Similarity=0.112 Sum_probs=24.6
Q ss_pred CCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCC
Q ss_conf 32033112210000000233210023322023310024420100
Q gi|254780771|r 146 GVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVI 189 (347)
Q Consensus 146 ~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~ 189 (347)
++.|+++|.| .++.| .++.||.+|.|+++++|.+|+|..+..
T Consensus 308 ~SlI~~GciI-~g~~V-~nSVlg~~v~I~~ga~V~nSIimg~d~ 349 (429)
T PRK02862 308 ESIISEGCIL-KNCSI-HHSVLGVRSRIESDCVLEDTLVMGADF 349 (429)
T ss_pred CCEECCCEEE-ECCEE-ECCEECCCCEECCCCEEEEEEEECCCC
T ss_conf 4597597698-38888-767888985898998996318987754
No 104
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=99.19 E-value=2e-11 Score=80.82 Aligned_cols=69 Identities=39% Similarity=0.595 Sum_probs=34.2
Q ss_pred CEEEECCCCCCCCHHCC--CCCCCCCCCCCEEEEEEE-E-EEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEC
Q ss_conf 20331122100000002--332100233220233100-2-4420100000232134454335566653110444320000
Q gi|254780771|r 147 VEIGRKTYVGPGSVIGA--GVRIGRNCSIGAGSSIYS-S-LIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQ 222 (347)
Q Consensus 147 v~IG~~~~I~~~~~I~~--~~~IG~~~~I~~~~~I~~-~-iIG~~~~I~~~~vIG~~GFgf~~~~~~~~~~~~~G~v~Ig 222 (347)
++||++++|+++++|.. +++||++|.|++++.|.. + .++++.....+. ...+.+.||
T Consensus 2 v~IG~~~~Ig~~~~I~~~~~i~IG~~~~I~~~~~i~~~~~~~~~~~~~~~~~-------------------~~~~~v~Ig 62 (109)
T cd04647 2 ISIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQG-------------------VTSAPIVIG 62 (109)
T ss_pred CEECCCCEECCCCEEECCCCEEECCCCEECCEEEEEEEEEECCCCCEECCCC-------------------CEECCEEEE
T ss_conf 1999998999999996898879999849935089833001328875252676-------------------371897994
Q ss_pred CCCCCCCCCCCC
Q ss_conf 244445444433
Q gi|254780771|r 223 DKVEIGANSAID 234 (347)
Q Consensus 223 ~~v~IG~n~tId 234 (347)
|+|.||++++|-
T Consensus 63 ~~v~IG~~~~I~ 74 (109)
T cd04647 63 DDVWIGANVVIL 74 (109)
T ss_pred CCCEECCCEEEE
T ss_conf 235788983992
No 105
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=99.18 E-value=3e-12 Score=85.26 Aligned_cols=67 Identities=22% Similarity=0.303 Sum_probs=24.7
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCC
Q ss_conf 101211122211235576543331--00156532334420000110011232033112210000000233210
Q gi|254780771|r 98 IAGSILYPQAMHMEASSFEGGISP--QAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIG 168 (347)
Q Consensus 98 ~i~~~l~~~~~~~~~~~~~~~I~~--~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG 168 (347)
++.++|+.+....-.......++. ..-|||.|+||.++.|.... +++||+.++|+.+|.|.++|++|
T Consensus 115 RvAH~LW~~~r~~la~~lq~~~s~~~gvdIHP~A~iG~gi~iDH~~----GvVIGETavigd~vsi~~~VTLG 183 (273)
T PRK11132 115 RIGHWLWNQGRRALAIYLQNQISVAFQVDIHPAAKIGRGIMLDHAT----GIVVGETAVIENDVSILQSVTLG 183 (273)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCEECCCEEEECCC----CEEECCEEEECCCEEEECCEEEE
T ss_conf 9999999888878999999999998512526665116856883476----35875646866854895123540
No 106
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.17 E-value=1e-11 Score=82.31 Aligned_cols=47 Identities=32% Similarity=0.533 Sum_probs=29.1
Q ss_pred EEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEC
Q ss_conf 331122100000002332100233220233100244201000002321
Q gi|254780771|r 149 IGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRI 196 (347)
Q Consensus 149 IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vI 196 (347)
||++|.|++++.|+ ++.||++|.|++++.|.+|+|.+++.|++++.|
T Consensus 2 IG~~~~Ig~~~~I~-~svIG~~c~Ig~~~~I~~Sii~~~~~Ig~~~~i 48 (79)
T cd03356 2 IGESTVIGENAIIK-NSVIGDNVRIGDGVTITNSILMDNVTIGANSVI 48 (79)
T ss_pred CCCCCEECCCCEEE-CCEECCCCEECCCCEEEEEEEECCCEECCCCEE
T ss_conf 98979999999995-999999999999969961099797999999999
No 107
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=99.15 E-value=4.5e-11 Score=78.90 Aligned_cols=115 Identities=21% Similarity=0.235 Sum_probs=55.3
Q ss_pred CCEEEECCCCCCCCHH--CCCCCCCCCCCCCEEEEEEE--EEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 3203311221000000--02332100233220233100--2442010000023213445433556665311044432000
Q gi|254780771|r 146 GVEIGRKTYVGPGSVI--GAGVRIGRNCSIGAGSSIYS--SLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVII 221 (347)
Q Consensus 146 ~v~IG~~~~I~~~~~I--~~~~~IG~~~~I~~~~~I~~--~iIG~~~~I~~~~vIG~~GFgf~~~~~~~~~~~~~G~v~I 221 (347)
++.||++++|+.++.+ +.++.||++|.|++++.|.. ..-.++...++........+ ........+..+.++|
T Consensus 1 ni~IG~~syi~~~~~i~~~~~v~IG~~~~I~~~v~I~~~~~h~~~~~~~~p~~~~~~~~~----~~~~~~~~~~~~~i~I 76 (145)
T cd03349 1 NISVGDYSYGSGPDCDVGGDKLSIGKFCSIAPGVKIGLGGNHPTDWVSTYPFYIFGGEWE----DDAKFDDWPSKGDVII 76 (145)
T ss_pred CCEECCCEEECCCCEEECCCCCEECCCCEECCCCEEECCCCCCCCCEEECCEEEECCCCC----CCCCCCCCCCCCCEEE
T ss_conf 928899878889936962897289999789999999799987875606442075236667----6200026541699798
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEECCCCEEEECCEEECCEEECCCC
Q ss_conf 02444454444332222221111122211123444465035771886555650363656972973068783785988888
Q gi|254780771|r 222 QDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNV 301 (347)
Q Consensus 222 g~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~v~i~hn~~iG~~~~~~~~~~~~g~~~ig~~~~ig~~~~i~~~v~ig~~~ 301 (347)
||+|.||+|++|-. .++||+++++|++|.+... +.+++
T Consensus 77 g~~vwIG~n~~Il~----------------------------------------GV~IG~gavIgAgSvVtkd--vp~~~ 114 (145)
T cd03349 77 GNDVWIGHGATILP----------------------------------------GVTIGDGAVIAAGAVVTKD--VPPYA 114 (145)
T ss_pred CCCEEECCCCEEEC----------------------------------------CCEECCCCEEECCCEECCC--CCCCC
T ss_conf 89969999888958----------------------------------------8096788689289789704--69994
Q ss_pred EECCC
Q ss_conf 98625
Q gi|254780771|r 302 QIASK 306 (347)
Q Consensus 302 ~i~a~ 306 (347)
++++.
T Consensus 115 i~~G~ 119 (145)
T cd03349 115 IVGGN 119 (145)
T ss_pred EEEEE
T ss_conf 99833
No 108
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.14 E-value=2.3e-11 Score=80.50 Aligned_cols=77 Identities=29% Similarity=0.445 Sum_probs=55.4
Q ss_pred CCCCCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCC
Q ss_conf 33100156532334420000110011232033112210000000233210023322023310024420100000232134
Q gi|254780771|r 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGN 198 (347)
Q Consensus 119 I~~~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vIG~ 198 (347)
+.+.+.+ .++.|++++.|. .+.| .+++||.+|+|++++.| .++.|.+++.|+.++.|++++|+++|.|+++++||.
T Consensus 4 ~~~~~~v-~~S~Ig~Gc~I~-~~~V-~~SVIg~~~~Ig~~a~I-~~svi~~~~~Ig~~~~l~~~Ii~~~~~I~~g~~Ig~ 79 (104)
T cd04651 4 IGRRGEV-KNSLVSEGCIIS-GGTV-ENSVLFRGVRVGSGSVV-EDSVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIGG 79 (104)
T ss_pred ECCCCEE-EECEECCCCEEE-CCEE-ECCEECCCCEECCCCEE-ECCEEECCCEECCCCEEEEEEECCCCEECCCCEECC
T ss_conf 8899489-849988997995-9999-80897299799999899-600996556899999998619999999998999998
Q ss_pred C
Q ss_conf 4
Q gi|254780771|r 199 D 199 (347)
Q Consensus 199 ~ 199 (347)
+
T Consensus 80 ~ 80 (104)
T cd04651 80 D 80 (104)
T ss_pred C
T ss_conf 9
No 109
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=99.14 E-value=2e-11 Score=80.78 Aligned_cols=125 Identities=23% Similarity=0.261 Sum_probs=65.6
Q ss_pred CCCCCCEEHH--HCCCCCCEEEECCCCCCCCHHCC--CCCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCCCCCCCCCC
Q ss_conf 3442000011--00112320331122100000002--3321002332202331002442010000023213445433556
Q gi|254780771|r 131 IEDGVVIAPM--AVVYPGVEIGRKTYVGPGSVIGA--GVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARG 206 (347)
Q Consensus 131 I~~~v~I~~~--~~I~~~v~IG~~~~I~~~~~I~~--~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vIG~~GFgf~~~ 206 (347)
+++++.|.|. |--|.|..||+++.|..+|++.+ .++||++|.|+|||.|+-+. |+ +.....
T Consensus 58 ~g~~~~IepPF~cdYG~NI~iG~~~fiN~n~~ilD~~~I~IGd~v~iGPnV~i~t~~-------Hp--------~~~~~R 122 (203)
T PRK09527 58 VGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTG-------HP--------VHHELR 122 (203)
T ss_pred CCCCCEEECCEEEECCCCEEECCCEEECCCCEEEECCCEEECCCEEECCCCEEECCC-------CC--------CCHHHH
T ss_conf 599978969978725479697798798688389957637998972886997893698-------98--------898897
Q ss_pred CCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEECCCCEEE
Q ss_conf 66531104443200002444454444332222221111122211123444465035771886555650363656972973
Q gi|254780771|r 207 VSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIG 286 (347)
Q Consensus 207 ~~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~v~i~hn~~iG~~~~~~~~~~~~g~~~ig~~~~ig 286 (347)
...+. .---|.|||+|.||++++| ..+++||+++++|
T Consensus 123 ~~~~~---~~~pi~Ig~~vwIG~~~~I----------------------------------------~pGv~IG~~~vig 159 (203)
T PRK09527 123 KNGEM---YSFPITIGNNVWIGSHVVI----------------------------------------NPGVTIGDNSVIG 159 (203)
T ss_pred HCCCC---CCCCEEECCEEEECCCCEE----------------------------------------CCCCEECCCCEEC
T ss_conf 33876---6888599986898999999----------------------------------------0992999997991
Q ss_pred ECCEEECCEEECCCCEECCC-CEEEEEECC
Q ss_conf 06878378598888898625-326000079
Q gi|254780771|r 287 GQCGIAGYLKIGDNVQIASK-SGVLKDIPA 315 (347)
Q Consensus 287 ~~~~i~~~v~ig~~~~i~a~-s~v~~~v~~ 315 (347)
++|.+.. .|.+++++++. +-|.|.+.+
T Consensus 160 AgsvVtk--dip~~~v~~G~Parvir~i~~ 187 (203)
T PRK09527 160 AGSVVTK--DIPPNVVAAGVPCRVIREIND 187 (203)
T ss_pred CCCEECC--CCCCCCEEEEECCEEEEECCH
T ss_conf 4988853--069982999628288986898
No 110
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.14 E-value=1.8e-11 Score=81.07 Aligned_cols=47 Identities=32% Similarity=0.555 Sum_probs=24.7
Q ss_pred EEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEC
Q ss_conf 331122100000002332100233220233100244201000002321
Q gi|254780771|r 149 IGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRI 196 (347)
Q Consensus 149 IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vI 196 (347)
||+++.|++++.| +++.||++|+|++++.|.+|+|.+++.|++++.|
T Consensus 2 IG~~~~Ig~~~~I-~~SvIG~nc~Ig~~~~i~~sii~~~v~I~~~~~i 48 (81)
T cd04652 2 VGENTQVGEKTSI-KRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTL 48 (81)
T ss_pred CCCCCEECCCCEE-ECCEECCCCEECCCCEEECCEEECCCEECCCCEE
T ss_conf 8798899999989-6799979999999968968999698798999899
No 111
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.13 E-value=2.6e-11 Score=80.21 Aligned_cols=64 Identities=17% Similarity=0.332 Sum_probs=33.3
Q ss_pred CCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEC
Q ss_conf 344200001100112320331122100000002332100233220233100244201000002321
Q gi|254780771|r 131 IEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRI 196 (347)
Q Consensus 131 I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vI 196 (347)
|++++.|++++.|. ++.||+||+|++++.| .++.|.++++|+.++.|.+++||+++.|++++.+
T Consensus 2 IG~~~~Ig~~~~I~-~SvIG~nc~Ig~~~~i-~~sii~~~v~I~~~~~i~~sIIg~~~~Ig~~~~l 65 (81)
T cd04652 2 VGENTQVGEKTSIK-RSVIGANCKIGKRVKI-TNCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKL 65 (81)
T ss_pred CCCCCEECCCCEEE-CCEECCCCEECCCCEE-ECCEEECCCEECCCCEEECCEEECCCEECCCCEE
T ss_conf 87988999999896-7999799999999689-6899969879899989974999097999999999
No 112
>TIGR01172 cysE serine O-acetyltransferase; InterPro: IPR005881 The biosynthesis of L-cysteine is the predominant way by which inorganic sulphur is incorporated into organic compounds. In this process, the most abundant utilizable source of sulphur, inorganic sulphate, is taken up and reduced to sulphide. Sulphide is used to produce L-cysteine, which serves for protein synthesis or the production of other sulphur-containing organic compounds. Two routes for cysteine biosynthesis in nature have been documented. Serine transacetylase (2.3.1.30 from EC) catalyzes steps in pathway I, the activation of L-serine by acetyl-coenzyme A, yielding O-acetyl-L-serine.; GO: 0009001 serine O-acetyltransferase activity, 0006535 cysteine biosynthetic process from serine, 0005737 cytoplasm.
Probab=99.10 E-value=2.4e-11 Score=80.35 Aligned_cols=85 Identities=27% Similarity=0.460 Sum_probs=49.6
Q ss_pred CCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCCCCCCCC
Q ss_conf 56532334420000110011232033112210000000233210023322023310024420100000232134454335
Q gi|254780771|r 125 LGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYA 204 (347)
Q Consensus 125 I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vIG~~GFgf~ 204 (347)
|||.|+||.+++|.... +++||+.+.|+.++.|+++|++|=...-.. +=+|-.|+|+|+|++||.|
T Consensus 64 IHPgA~IG~g~fIDHg~----GvVIGETa~iGddv~iyhGVTLGGtgk~~G--~kRHPt~~~gV~iGAGAKv-------- 129 (163)
T TIGR01172 64 IHPGARIGRGVFIDHGT----GVVIGETAEIGDDVTIYHGVTLGGTGKEKG--VKRHPTIGEGVVIGAGAKV-------- 129 (163)
T ss_pred CCCCCCCCCEEEEECCC----CEEEEEEEEECCCEEEEECEEECCCCCCCC--CCCCCCCCCCEEEEECCEE--------
T ss_conf 17643007730777560----368500368738837863212067888878--8988825687178407824--------
Q ss_pred CCCCCCCCCCCCCCCEECCCCCCCCCCCCC
Q ss_conf 566653110444320000244445444433
Q gi|254780771|r 205 RGVSDIHKIVHIGRVIIQDKVEIGANSAID 234 (347)
Q Consensus 205 ~~~~~~~~~~~~G~v~Ig~~v~IG~n~tId 234 (347)
||...||+|+.||||+.+-
T Consensus 130 -----------LG~I~vG~~AkiGAnsVVl 148 (163)
T TIGR01172 130 -----------LGNIEVGENAKIGANSVVL 148 (163)
T ss_pred -----------ECCEEECCCCEECCCEEEC
T ss_conf -----------0376677997772332673
No 113
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.07 E-value=7.4e-11 Score=77.72 Aligned_cols=62 Identities=31% Similarity=0.485 Sum_probs=24.4
Q ss_pred CCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEE
Q ss_conf 4420000110011232033112210000000233210023322023310024420100000232
Q gi|254780771|r 132 EDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVR 195 (347)
Q Consensus 132 ~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~v 195 (347)
++++.|++++.|++ +.||++|.|++++.| .++.|.++++|++++.+.+++|++++.|++++.
T Consensus 3 G~~~~Ig~~~~I~~-svIG~~c~Ig~~~~I-~~Sii~~~~~Ig~~~~i~~sII~~~~~Ig~~~~ 64 (79)
T cd03356 3 GESTVIGENAIIKN-SVIGDNVRIGDGVTI-TNSILMDNVTIGANSVIVDSIIGDNAVIGENVR 64 (79)
T ss_pred CCCCEECCCCEEEC-CEECCCCEECCCCEE-EEEEEECCCEECCCCEEECCEECCCCEECCCCE
T ss_conf 89799999999959-999999999999699-610997979999999996999949899999999
No 114
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=99.06 E-value=3e-10 Score=74.40 Aligned_cols=38 Identities=26% Similarity=0.463 Sum_probs=23.5
Q ss_pred CCCCCEEEECCCCCCCCHHCC--CCCCCCCCCCCEEEEEE
Q ss_conf 112320331122100000002--33210023322023310
Q gi|254780771|r 143 VYPGVEIGRKTYVGPGSVIGA--GVRIGRNCSIGAGSSIY 180 (347)
Q Consensus 143 I~~~v~IG~~~~I~~~~~I~~--~~~IG~~~~I~~~~~I~ 180 (347)
-|.+..||+|++|+.+|++.+ .++||++|.|+|||.|+
T Consensus 70 YG~ni~iG~~~~iN~~~~ilD~~~I~IG~~v~iGpnv~i~ 109 (183)
T PRK10092 70 YGYNIFLGNNFYANFDCVMLDVCPIHIGDNCMLAPGVHIY 109 (183)
T ss_pred CCCCEEECCCEEEECCEEEEECCCEEECCCEEECCCCEEE
T ss_conf 6778786787699278499947873999980584997898
No 115
>KOG1460 consensus
Probab=99.03 E-value=6.7e-10 Score=72.53 Aligned_cols=64 Identities=25% Similarity=0.367 Sum_probs=34.6
Q ss_pred CCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEC
Q ss_conf 44200001100112320331122100000002332100233220233100244201000002321
Q gi|254780771|r 132 EDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRI 196 (347)
Q Consensus 132 ~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vI 196 (347)
++++.++|.+.||+||.||.++++++++.+. ++.|-++|.|..|+++.+++||-++.|+.=+.+
T Consensus 292 hPsakvhptAkiGPNVSIga~vrvg~GvRl~-~sIIl~d~ei~enavVl~sIigw~s~iGrWaRV 355 (407)
T KOG1460 292 HPSAKVHPTAKIGPNVSIGANVRVGPGVRLR-ESIILDDAEIEENAVVLHSIIGWKSSIGRWARV 355 (407)
T ss_pred CCCCEECCCCCCCCCCEECCCCEECCCCEEE-EEEECCCCEEECCCEEEEEEECCCCCCCCEEEE
T ss_conf 6754047766208971446882546882665-456026737621636776541144322542430
No 116
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.03 E-value=2e-10 Score=75.32 Aligned_cols=66 Identities=15% Similarity=0.320 Sum_probs=42.9
Q ss_pred CCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 32033112210000000233210023322023310024420100000232134454335566653110444320000244
Q gi|254780771|r 146 GVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKV 225 (347)
Q Consensus 146 ~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vIG~~GFgf~~~~~~~~~~~~~G~v~Ig~~v 225 (347)
++.|+++|.|. ++.| .+++||++|+|+++++|.+|+|.++|.|++||+|- +++|+++|
T Consensus 315 ~s~I~~g~~I~-g~~V-~nSvIg~~v~Ig~ga~I~nSII~~~~~Ig~~a~I~--------------------~sIidk~v 372 (409)
T PRK00844 315 DSIVSAGSIIS-GGSV-RNSVLSPNVRVDSGAIVEGSVLMDGVRIGRGAVVR--------------------RAILDKNV 372 (409)
T ss_pred CCEECCCEEEE-CCEE-ECCEECCCCEECCCCEEECCEEECCCEECCCCEEE--------------------EEEECCCC
T ss_conf 58887970996-9988-88897799899999899518992949999999998--------------------01989998
Q ss_pred CCCCCCCC
Q ss_conf 44544443
Q gi|254780771|r 226 EIGANSAI 233 (347)
Q Consensus 226 ~IG~n~tI 233 (347)
.||+++.|
T Consensus 373 ~Ig~gt~I 380 (409)
T PRK00844 373 VVPPGTQI 380 (409)
T ss_pred EECCCCEE
T ss_conf 98999898
No 117
>PRK04928 consensus
Probab=99.02 E-value=1.7e-10 Score=75.75 Aligned_cols=51 Identities=20% Similarity=0.361 Sum_probs=31.5
Q ss_pred CEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCC
Q ss_conf 2033112210000000233210023322023310024420100000232134
Q gi|254780771|r 147 VEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGN 198 (347)
Q Consensus 147 v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vIG~ 198 (347)
++||.+|.|+++|.|. ++.|..+|.|++++.|.+++|+++|.|++|++||.
T Consensus 328 SvIg~~~~Ig~ga~I~-nSII~~~~~Ig~ga~i~~sIidk~v~Ig~g~~I~~ 378 (405)
T PRK04928 328 SVLGFRSNIASACDIS-ESVLLGDVKIGEGCVLRRVIIDKDVEIAPGTQIGE 378 (405)
T ss_pred CEECCCCEECCCCEEE-CCEEECCCEECCCCEEECCEECCCCEECCCCEECC
T ss_conf 8976998999994995-58996929999999996549889999999999983
No 118
>PRK03282 consensus
Probab=99.02 E-value=2.1e-10 Score=75.30 Aligned_cols=65 Identities=11% Similarity=0.236 Sum_probs=41.4
Q ss_pred CEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 20331122100000002332100233220233100244201000002321344543355666531104443200002444
Q gi|254780771|r 147 VEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVE 226 (347)
Q Consensus 147 v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vIG~~GFgf~~~~~~~~~~~~~G~v~Ig~~v~ 226 (347)
+.|+++|.|.. +.+ .++.||++|.|+++++|.+|+|.++|.|++||.|. +++|+.+|.
T Consensus 314 S~i~~G~vI~g-~~V-~nSvIg~~v~Ig~ga~I~~SIIm~~~~Ig~~a~l~--------------------~~Iidk~v~ 371 (406)
T PRK03282 314 SIVSAGSIISG-ASV-RNSVLSPNVVVDSGAIVEGSVLMPGVRIGRGAVVR--------------------HAILDKNVV 371 (406)
T ss_pred CEECCCCEEEC-CEE-ECCEECCCCEECCCCEEECCEEECCCEECCCCEEE--------------------CCEECCCCE
T ss_conf 78648859859-988-89997899899999899708890968999999997--------------------319899999
Q ss_pred CCCCCCC
Q ss_conf 4544443
Q gi|254780771|r 227 IGANSAI 233 (347)
Q Consensus 227 IG~n~tI 233 (347)
||+++.|
T Consensus 372 Ig~g~~I 378 (406)
T PRK03282 372 VPPGAMV 378 (406)
T ss_pred ECCCCEE
T ss_conf 9989899
No 119
>PRK03701 consensus
Probab=99.01 E-value=1.1e-10 Score=76.76 Aligned_cols=51 Identities=14% Similarity=0.183 Sum_probs=25.0
Q ss_pred CCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEECC
Q ss_conf 3203311221000000023321002332202331002442010000023213
Q gi|254780771|r 146 GVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIG 197 (347)
Q Consensus 146 ~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vIG 197 (347)
+++|+.+|.|+++++|. ++.|-.+|.|++|+.|.+++|.++|.|.+|++||
T Consensus 347 nSVl~r~v~I~~gA~V~-nSIIm~~~~Ig~ga~l~~~IiDk~v~I~~g~vIg 397 (431)
T PRK03701 347 QSVLFPRVRVNSFCNID-SAVLLPEVWVGRSCRLRRCVIDRACVIPEGMVIG 397 (431)
T ss_pred CCCCCCCCEECCCCEEE-CCEECCCCEECCCCEEEEEEECCCCEECCCCEEC
T ss_conf 09811888999998997-2698596989999999837989999999799989
No 120
>KOG1322 consensus
Probab=98.99 E-value=8e-10 Score=72.11 Aligned_cols=76 Identities=20% Similarity=0.226 Sum_probs=39.9
Q ss_pred CCCCCCCC----CCHHHHHHHHC---C--EEECCCCCCEEECCCCCHHHCCCCCEEEECCHHHHHHHHHCCCEEEEECHH
Q ss_conf 44467788----03999999846---6--995577663387156798888998699961867677775458569998877
Q gi|254780771|r 5 NFFVSHKG----IALMKLAQSIG---A--SLLDENFGERMIYSLSPIARASTGDISYIISRKFLNNIEKCKASAIICSQD 75 (347)
Q Consensus 5 ~Ff~~~~~----~sl~eIa~~l~---~--~l~g~~~~d~~I~~I~~l~~A~~~~IsFi~~~kyl~~l~~s~A~aiI~~~d 75 (347)
.||...+- |.++++.+.-- + ++..-+..+-.=.++--+++++.-=..|..+||.+... ..+|+..++.++
T Consensus 114 ~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI~~t~vdepSkyGvv~~d~~~grV~~F~EKPkd~vsn-kinaGiYi~~~~ 192 (371)
T KOG1322 114 PFFVLNSDVICRMPYKEMVQFHRAHGAEITIVVTKVDEPSKYGVVVIDEDTGRVIRFVEKPKDLVSN-KINAGIYILNPE 192 (371)
T ss_pred CEEEECCCEEECCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEECCCCCEEEEHHCCHHHHHC-CCCCEEEEECHH
T ss_conf 6799557726437799999999855996589987446853263699935888255802175656533-124158997799
Q ss_pred HHHCCC
Q ss_conf 610144
Q gi|254780771|r 76 IVPFIP 81 (347)
Q Consensus 76 ~~~~~~ 81 (347)
....+.
T Consensus 193 vL~ri~ 198 (371)
T KOG1322 193 VLDRIL 198 (371)
T ss_pred HHHHHH
T ss_conf 986765
No 121
>PRK01884 consensus
Probab=98.98 E-value=2.8e-10 Score=74.54 Aligned_cols=65 Identities=20% Similarity=0.237 Sum_probs=36.4
Q ss_pred CCCEEHHHCCC----CCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCCC
Q ss_conf 20000110011----2320331122100000002332100233220233100244201000002321344
Q gi|254780771|r 134 GVVIAPMAVVY----PGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGND 199 (347)
Q Consensus 134 ~v~I~~~~~I~----~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vIG~~ 199 (347)
++.|+.+|+|. ++++|+.+|.|+.+++|. +++|..+|.|+.+++|.+++|.++|.|.+|++||-|
T Consensus 329 nSlIa~GcvI~~g~V~nSVL~r~v~I~~gA~V~-nSIIm~~~~IG~ga~l~~~IiDk~v~I~~g~~IG~~ 397 (435)
T PRK01884 329 NSLIAGGCVITDASISNSVLFDRIKVDEFSKID-HCVVLPQVKIGKNCVLKRCIIDRHCVIPDGMQIGVD 397 (435)
T ss_pred CCEECCCEEEECCEEECCEEECCCEECCCCEEE-ECEEECCCEECCCCEEEEEEECCCCEECCCCEECCC
T ss_conf 899819979939899719820896999999998-288808698999999962698999999979999858
No 122
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.97 E-value=2.4e-10 Score=74.95 Aligned_cols=51 Identities=16% Similarity=0.199 Sum_probs=26.2
Q ss_pred CCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEECC
Q ss_conf 3203311221000000023321002332202331002442010000023213
Q gi|254780771|r 146 GVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIG 197 (347)
Q Consensus 146 ~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vIG 197 (347)
+++|+.+|.|++++.| .|+.|..+|.|++++.|.+++|+.+|.|++|++||
T Consensus 347 nSVI~r~v~Ig~gA~V-~nSIIm~~~~IG~ga~l~naIiDk~v~I~~G~~Ig 397 (431)
T PRK00725 347 QSVLFTRVRVNSFSNI-DSAVLLPEVWVGRSCRLRRCVIDRACVIPEGMVIG 397 (431)
T ss_pred ECCCCCCCEECCCCEE-EEEEECCCCEECCCCEEEEEEECCCCEECCCCEEC
T ss_conf 2982599899999899-61398898988999999713989998989899989
No 123
>KOG1462 consensus
Probab=98.92 E-value=6.6e-10 Score=72.54 Aligned_cols=17 Identities=12% Similarity=0.186 Sum_probs=5.9
Q ss_pred CCCCCHHHCCCCCEEEEC
Q ss_conf 156798888998699961
Q gi|254780771|r 37 YSLSPIARASTGDISYII 54 (347)
Q Consensus 37 ~~I~~l~~A~~~~IsFi~ 54 (347)
+++-.+++.++- +.|..
T Consensus 166 ~d~igi~e~t~r-l~y~~ 182 (433)
T KOG1462 166 RDVIGINEDTER-LAYSS 182 (433)
T ss_pred CCEEEECCCCCE-EEEEE
T ss_conf 213444156633-68840
No 124
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.90 E-value=8.6e-10 Score=71.93 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=17.9
Q ss_pred CCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEC
Q ss_conf 332100233220233100244201000002321
Q gi|254780771|r 164 GVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRI 196 (347)
Q Consensus 164 ~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vI 196 (347)
++.|+++|.| .+++|.+|+||.+|.|++||+|
T Consensus 308 ~SlI~~GciI-~g~~V~nSVlg~~v~I~~ga~V 339 (429)
T PRK02862 308 ESIISEGCIL-KNCSIHHSVLGVRSRIESDCVL 339 (429)
T ss_pred CCEECCCEEE-ECCEEECCEECCCCEECCCCEE
T ss_conf 4597597698-3888876788898589899899
No 125
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=98.89 E-value=8.9e-10 Score=71.85 Aligned_cols=74 Identities=22% Similarity=0.247 Sum_probs=43.5
Q ss_pred EEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00110011232033112210000000233210023322023310024420100000232134454335566653110444
Q gi|254780771|r 137 IAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHI 216 (347)
Q Consensus 137 I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vIG~~GFgf~~~~~~~~~~~~~ 216 (347)
+++.+.| .++.||++|.|.. +.| .++.||++|.|++++.|.+|+|++++.|++++.|-
T Consensus 4 ~~~~~~v-~~S~Ig~Gc~I~~-~~V-~~SVIg~~~~Ig~~a~I~~svi~~~~~Ig~~~~l~------------------- 61 (104)
T cd04651 4 IGRRGEV-KNSLVSEGCIISG-GTV-ENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIR------------------- 61 (104)
T ss_pred ECCCCEE-EECEECCCCEEEC-CEE-ECCEECCCCEECCCCEEECCEEECCCEECCCCEEE-------------------
T ss_conf 8899489-8499889979959-999-80897299799999899600996556899999998-------------------
Q ss_pred CCCEECCCCCCCCCCCC
Q ss_conf 32000024444544443
Q gi|254780771|r 217 GRVIIQDKVEIGANSAI 233 (347)
Q Consensus 217 G~v~Ig~~v~IG~n~tI 233 (347)
+++|+++|.||.++.|
T Consensus 62 -~~Ii~~~~~I~~g~~I 77 (104)
T cd04651 62 -RAIIDKNVVIPDGVVI 77 (104)
T ss_pred -EEEECCCCEECCCCEE
T ss_conf -6199999999989999
No 126
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; InterPro: IPR005664 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see . The lysine/diaminopimelic acid branch of the aspartate pathway produces the essential amino acid lysine via the intermediate meso-diaminopimelic acid (meso-DAP), which is also a vital cell wall component in Gram-negative bacteria . The production of dihydropicolinate from aspartate-semialdehyde controls flux into the lysine/diaminopimelic acid pathway. Three variants of this pathway exist, differing in how tetrahydropicolinate (formed by reduction of dihydropicolinate) is metabolised to meso-DAP. One variant, the most commonly found one in archaea and bacteria, uses primarily succinyl intermediates, while a second variant, found only in Bacillus, utilises primarily acetyl intermediates. In the third variant, found in some Gram-positive bacteria, a dehydrogenase converts tetrahydropicolinate directly to meso-DAP. In all variants meso-DAP is subsequently converted to lysine by a decarboxylase, or, in Gram-negative bacteria, assimilated into the cell wall. Evidence exists that a fourth, currently unknown, variant of this pathway may function in plants . 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase (also known as tetrahydrodipicolinate N-succinyltransferase or DapD) is part of the succinyl route of of lysine/DAP biosynthesis. The DapD protein is a homotrimer is a trimeric enzyme with each monomer composed of three domain: an N-terminal helical domain, a distinctive left-handed parallel beta-helix (LBH) domain, and a predominantly beta C-terminal domain , . The LBH structure is encoded by an imperfect tandem-repeated hexapeptide sequence. Each trimer contains three independent active sites, always occuring at the boundary of two subunits, and formed by residues from one N-terminal domain, one C-terminal domain and two adjacent LBH domains.; GO: 0016757 transferase activity transferring glycosyl groups, 0009089 lysine biosynthetic process via diaminopimelate.
Probab=98.87 E-value=3.7e-09 Score=68.48 Aligned_cols=199 Identities=22% Similarity=0.169 Sum_probs=97.8
Q ss_pred EECCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCC
Q ss_conf 00123201122101211122211235576543331001565323344200001100112320331122100000002332
Q gi|254780771|r 87 LLSDKPEVSFAIAGSILYPQAMHMEASSFEGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVR 166 (347)
Q Consensus 87 Iiv~nP~~afA~i~~~l~~~~~~~~~~~~~~~I~~~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~ 166 (347)
++-++-..-|-|+...|.....+..+.+..-..-|.|.+-.++.|.+|+++-|. +|-=++.|.+++.|..+++||.-++
T Consensus 74 ~~~~~~~~yfDKV~~KFpAD~d~~~Fk~~g~R~VPgA~vR~G~fiAkNvVlMPS-yvNIGAYvDEGtMvDTWATvGSCAQ 152 (275)
T TIGR00965 74 VLNDAVNKYFDKVPTKFPADYDENEFKEAGFRKVPGAIVRRGTFIAKNVVLMPS-YVNIGAYVDEGTMVDTWATVGSCAQ 152 (275)
T ss_pred HHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHEECCCEEEEEEEECCC-EEECCCEEECCCEECCHHHHCCHHH
T ss_conf 110675320125788788876567886466654874360057357752377555-2101367516860100122300322
Q ss_pred CCCCCCCCEEEEEEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 10023322023310024420100000232134454335566653110444320000244445444433222222111112
Q gi|254780771|r 167 IGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGEN 246 (347)
Q Consensus 167 IG~~~~I~~~~~I~~~iIG~~~~I~~~~vIG~~GFgf~~~~~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~~t~Ig~~ 246 (347)
||+||+|.- |+=||.- ..|... -=++|+|||.|||.|-|
T Consensus 153 IGKNvHlSG-----------------G~GIGGV---LEPLQA--------~P~IIEDNCFiGARSEi------------- 191 (275)
T TIGR00965 153 IGKNVHLSG-----------------GVGIGGV---LEPLQA--------KPTIIEDNCFIGARSEI------------- 191 (275)
T ss_pred HCCCEEEEC-----------------CCCCCCC---CCCCCC--------CCEEEECCCEECCCEEE-------------
T ss_conf 066257517-----------------8331652---463357--------87588247600461135-------------
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEECCCCEEEECCEEECCEEECCCCEECCCCEEEEEECCCCEEEEECCHH
Q ss_conf 22111234444650357718865556503636569729730687837859888889862532600007987899824175
Q gi|254780771|r 247 TKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARP 326 (347)
Q Consensus 247 ~~id~~v~i~hn~~iG~~~~~~~~~~~~g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~v~~~~~~~G~pa~~ 326 (347)
.-.|.+-++++|+-++.|+-||+|=+.-. +- |.. =||..++++-.|++=.-..-..++|--.=.|.
T Consensus 192 ---------~EGVIVEEGSVISMGVfIG~STkI~~R~T---GE-I~~-GRvPA~SVVVsG~lPsp~~G~~sLYC~VIVK~ 257 (275)
T TIGR00965 192 ---------VEGVIVEEGSVISMGVFIGQSTKIVDRDT---GE-IIY-GRVPAGSVVVSGILPSPKDGKYSLYCAVIVKK 257 (275)
T ss_pred ---------EEEEEECCCCEEEEEEEECCCCEEEECCC---CE-EEE-CCCCCEEEEECCCCCCCCCCCCCCEEEEEEEC
T ss_conf ---------62079716858884068556016885366---71-765-51356027971778875567964148999871
Q ss_pred HHHHHHHHHHHCCHH
Q ss_conf 888978678622826
Q gi|254780771|r 327 IGEYLRHMVMLSKPS 341 (347)
Q Consensus 327 ~~~~~~~~~~~~~l~ 341 (347)
....-|-...++.|.
T Consensus 258 VD~~TRgKvsiN~LL 272 (275)
T TIGR00965 258 VDAKTRGKVSINELL 272 (275)
T ss_pred CCCCCCCCCCHHHHH
T ss_conf 167667520156552
No 127
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.87 E-value=4.5e-09 Score=68.06 Aligned_cols=18 Identities=17% Similarity=0.318 Sum_probs=11.6
Q ss_pred CCCEECCCCCCCCCCCCC
Q ss_conf 320000244445444433
Q gi|254780771|r 217 GRVIIQDKVEIGANSAID 234 (347)
Q Consensus 217 G~v~Ig~~v~IG~n~tId 234 (347)
+.++|||+|.||+|++|-
T Consensus 55 ~~v~Ig~~v~IG~~~~I~ 72 (107)
T cd05825 55 APIVIGDGAWVAAEAFVG 72 (107)
T ss_pred CCEEECCCCEECCCCEEE
T ss_conf 997993885874987896
No 128
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.87 E-value=1.1e-09 Score=71.30 Aligned_cols=46 Identities=28% Similarity=0.484 Sum_probs=35.1
Q ss_pred CCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEE-EEEEECCCCC
Q ss_conf 320331122100000002332100233220233100-2442010000
Q gi|254780771|r 146 GVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYS-SLIGNSVILH 191 (347)
Q Consensus 146 ~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~-~iIG~~~~I~ 191 (347)
.|.|++++.|.|+++|...+.||++|.|++++.|++ +.||++|.|+
T Consensus 11 pV~I~~~~~I~~~~~i~Gp~~IG~~~~I~p~a~Ir~~t~Ig~~~~IG 57 (101)
T cd05635 11 PIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIG 57 (101)
T ss_pred CEEECCCCEECCCCEEECCEEECCCCEECCCCEEECCCEECCCCEEC
T ss_conf 99987999999999997666999999999997863887999997761
No 129
>PRK01884 consensus
Probab=98.83 E-value=2.5e-09 Score=69.44 Aligned_cols=66 Identities=17% Similarity=0.111 Sum_probs=47.2
Q ss_pred CCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 32033112210000000233210023322023310024420100000232134454335566653110444320000244
Q gi|254780771|r 146 GVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKV 225 (347)
Q Consensus 146 ~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vIG~~GFgf~~~~~~~~~~~~~G~v~Ig~~v 225 (347)
++.|+++|+|..+. | .++.|+++|.|+.+++|.+|+|..+|.|++||+|- +++|+++|
T Consensus 329 nSlIa~GcvI~~g~-V-~nSVL~r~v~I~~gA~V~nSIIm~~~~IG~ga~l~--------------------~~IiDk~v 386 (435)
T PRK01884 329 NSLIAGGCVITDAS-I-SNSVLFDRIKVDEFSKIDHCVVLPQVKIGKNCVLK--------------------RCIIDRHC 386 (435)
T ss_pred CCEECCCEEEECCE-E-ECCEEECCCEECCCCEEEECEEECCCEECCCCEEE--------------------EEEECCCC
T ss_conf 89981997993989-9-71982089699999999828880869899999996--------------------26989999
Q ss_pred CCCCCCCC
Q ss_conf 44544443
Q gi|254780771|r 226 EIGANSAI 233 (347)
Q Consensus 226 ~IG~n~tI 233 (347)
.||+|+.|
T Consensus 387 ~I~~g~~I 394 (435)
T PRK01884 387 VIPDGMQI 394 (435)
T ss_pred EECCCCEE
T ss_conf 99979999
No 130
>KOG3121 consensus
Probab=98.75 E-value=3.6e-09 Score=68.58 Aligned_cols=120 Identities=31% Similarity=0.480 Sum_probs=64.3
Q ss_pred CCEEEECCCCCCCCHHC---CCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEC
Q ss_conf 32033112210000000---233210023322023310024420100000232134454335566653110444320000
Q gi|254780771|r 146 GVEIGRKTYVGPGSVIG---AGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQ 222 (347)
Q Consensus 146 ~v~IG~~~~I~~~~~I~---~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vIG~~GFgf~~~~~~~~~~~~~G~v~Ig 222 (347)
|..|...+++..+++|. .++++|+.|+++++++|+.+. .+=+.| |..=.+.||
T Consensus 33 NI~lnGKtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~-----------K~FSKg-------------~affp~hiG 88 (184)
T KOG3121 33 NILLNGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPM-----------KIFSKG-------------PAFFPVHIG 88 (184)
T ss_pred EEEECCCEEEEECCEEECCCCCCEECCEEEECCCCCCCCCH-----------HHHCCC-------------CEEEEEEEC
T ss_conf 27983727986085895120102473368964665437706-----------775678-------------624566524
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEECCCCEEEECCEEECCEEECCCCE
Q ss_conf 24444544443322222211111222111234444650357718865556503636569729730687837859888889
Q gi|254780771|r 223 DKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQ 302 (347)
Q Consensus 223 ~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~v~i~hn~~iG~~~~~~~~~~~~g~~~ig~~~~ig~~~~i~~~v~ig~~~~ 302 (347)
|.|.|+..|.+..+. |+.+||+|.|+.||..|++-.+ -+|-++++
T Consensus 89 dhVFieE~cVVnAAq-----------IgsyVh~GknaviGrrCVlkdC------------------------c~ild~tV 133 (184)
T KOG3121 89 DHVFIEEECVVNAAQ-----------IGSYVHLGKNAVIGRRCVLKDC------------------------CRILDDTV 133 (184)
T ss_pred CEEEEECCEEEEHHH-----------HEEEEEECCCEEECCCEEHHHH------------------------EECCCCCC
T ss_conf 568870441862666-----------1203685464067375083341------------------------04158952
Q ss_pred ECCCCEEEEEECCCCEEEEECCHHHH
Q ss_conf 86253260000798789982417588
Q gi|254780771|r 303 IASKSGVLKDIPAGQQYGGMPARPIG 328 (347)
Q Consensus 303 i~a~s~v~~~v~~~~~~~G~pa~~~~ 328 (347)
+-+-++| ||++++.|+||+...
T Consensus 134 lPpet~v----ppy~~~~g~p~~~~G 155 (184)
T KOG3121 134 LPPETLV----PPYSTIGGNPAQVVG 155 (184)
T ss_pred CCCCCCC----CCCEEECCCCCEEEC
T ss_conf 5820136----971677388723531
No 131
>PRK03701 consensus
Probab=98.70 E-value=1.1e-08 Score=66.01 Aligned_cols=66 Identities=17% Similarity=0.173 Sum_probs=47.6
Q ss_pred CCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 32033112210000000233210023322023310024420100000232134454335566653110444320000244
Q gi|254780771|r 146 GVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKV 225 (347)
Q Consensus 146 ~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vIG~~GFgf~~~~~~~~~~~~~G~v~Ig~~v 225 (347)
++.|+++|.|. ++++. ++.|+++|.|+.+++|.+|+|..+|.|++||.|- +++|+++|
T Consensus 331 nSlia~GciI~-G~~V~-nSVl~r~v~I~~gA~V~nSIIm~~~~Ig~ga~l~--------------------~~IiDk~v 388 (431)
T PRK03701 331 NSLVSGGCIIS-GSVVV-QSVLFPRVRVNSFCNIDSAVLLPEVWVGRSCRLR--------------------RCVIDRAC 388 (431)
T ss_pred CCEEECCEEEE-CCEEE-CCCCCCCCEECCCCEEECCEECCCCEECCCCEEE--------------------EEEECCCC
T ss_conf 78985998993-84888-0981188899999899726985969899999998--------------------37989999
Q ss_pred CCCCCCCC
Q ss_conf 44544443
Q gi|254780771|r 226 EIGANSAI 233 (347)
Q Consensus 226 ~IG~n~tI 233 (347)
.|++++.|
T Consensus 389 ~I~~g~vI 396 (431)
T PRK03701 389 VIPEGMVI 396 (431)
T ss_pred EECCCCEE
T ss_conf 99979998
No 132
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=98.70 E-value=2.5e-08 Score=64.03 Aligned_cols=60 Identities=22% Similarity=0.235 Sum_probs=29.2
Q ss_pred CCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEE-EEEEEECCCCCEEEEC
Q ss_conf 0000110011232033112210000000233210023322023310-0244201000002321
Q gi|254780771|r 135 VVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIY-SSLIGNSVILHSGVRI 196 (347)
Q Consensus 135 v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~-~~iIG~~~~I~~~~vI 196 (347)
+.|.|.+.+--++.|++++++++..++--|+-++..+.|.. .|. ..+||++|.|+.++.|
T Consensus 2 vRi~~~~~VRlGAyl~~Gt~vM~egfVN~nAgt~g~~Mieg--rissgv~VG~~~diggGasi 62 (147)
T cd04649 2 VRIADADRVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEG--RISSGVIVGKGSDVGGGASI 62 (147)
T ss_pred EEECCCCEEEECCEECCCCEECCCCEEEECCCCCCCCEEEE--EEEECEEECCCCCCCCCCEE
T ss_conf 37447866873418879959862567987663066616876--78515698998332786178
No 133
>KOG1462 consensus
Probab=98.69 E-value=9.1e-09 Score=66.39 Aligned_cols=13 Identities=46% Similarity=0.759 Sum_probs=4.5
Q ss_pred ECCCCCCCCCCCC
Q ss_conf 0024444544443
Q gi|254780771|r 221 IQDKVEIGANSAI 233 (347)
Q Consensus 221 Ig~~v~IG~n~tI 233 (347)
++++++||+|+.|
T Consensus 337 v~~~t~i~~~s~i 349 (433)
T KOG1462 337 VGDNTQIGENSNI 349 (433)
T ss_pred CCCCCEECCCCEE
T ss_conf 1788552555402
No 134
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=98.68 E-value=9e-09 Score=66.40 Aligned_cols=34 Identities=29% Similarity=0.471 Sum_probs=23.0
Q ss_pred CEECCCCEEEECCEEECCEEECCCCEECCCCEEEEE
Q ss_conf 365697297306878378598888898625326000
Q gi|254780771|r 277 TYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKD 312 (347)
Q Consensus 277 ~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~ 312 (347)
+.||++|+||.++.+ ++.+||+|+|.||-.++.+
T Consensus 74 i~Ig~ncliGAnsgi--Gi~lGd~cvv~aGlyi~~g 107 (147)
T cd04649 74 ISIGKRCLLGANSGI--GISLGDNCIVEAGLYVTAG 107 (147)
T ss_pred EEECCCEEECCCCCC--CEEECCCCEEECCEEECCC
T ss_conf 698875076146545--8486898688244598399
No 135
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; InterPro: IPR005664 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see . The lysine/diaminopimelic acid branch of the aspartate pathway produces the essential amino acid lysine via the intermediate meso-diaminopimelic acid (meso-DAP), which is also a vital cell wall component in Gram-negative bacteria . The production of dihydropicolinate from aspartate-semialdehyde controls flux into the lysine/diaminopimelic acid pathway. Three variants of this pathway exist, differing in how tetrahydropicolinate (formed by reduction of dihydropicolinate) is metabolised to meso-DAP. One variant, the most commonly found one in archaea and bacteria, uses primarily succinyl intermediates, while a second variant, found only in Bacillus, utilises primarily acetyl intermediates. In the third variant, found in some Gram-positive bacteria, a dehydrogenase converts tetrahydropicolinate directly to meso-DAP. In all variants meso-DAP is subsequently converted to lysine by a decarboxylase, or, in Gram-negative bacteria, assimilated into the cell wall. Evidence exists that a fourth, currently unknown, variant of this pathway may function in plants . 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase (also known as tetrahydrodipicolinate N-succinyltransferase or DapD) is part of the succinyl route of of lysine/DAP biosynthesis. The DapD protein is a homotrimer is a trimeric enzyme with each monomer composed of three domain: an N-terminal helical domain, a distinctive left-handed parallel beta-helix (LBH) domain, and a predominantly beta C-terminal domain , . The LBH structure is encoded by an imperfect tandem-repeated hexapeptide sequence. Each trimer contains three independent active sites, always occuring at the boundary of two subunits, and formed by residues from one N-terminal domain, one C-terminal domain and two adjacent LBH domains.; GO: 0016757 transferase activity transferring glycosyl groups, 0009089 lysine biosynthetic process via diaminopimelate.
Probab=98.67 E-value=3.1e-08 Score=63.51 Aligned_cols=71 Identities=25% Similarity=0.358 Sum_probs=61.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECC--------CEECCCCEEEECCEEECCEEECCCCEECCCCEEEEE
Q ss_conf 11112221112344446503577188655565036--------365697297306878378598888898625326000
Q gi|254780771|r 242 IIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGS--------TYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKD 312 (347)
Q Consensus 242 ~Ig~~~~id~~v~i~hn~~iG~~~~~~~~~~~~g~--------~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~ 312 (347)
.|.+|+++|.-..||.=.+||+||-+++++||+|= +.|+||||+|+.+-+..+|-+-++++|.+|-.+=++
T Consensus 134 YvDEGtMvDTWATvGSCAQIGKNvHlSGG~GIGGVLEPLQA~P~IIEDNCFiGARSEi~EGVIVEEGSVISMGVfIG~S 212 (275)
T TIGR00965 134 YVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQAKPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQS 212 (275)
T ss_pred EEECCCEECCHHHHCCHHHHCCCEEEECCCCCCCCCCCCCCCCEEEECCCEECCCEEEEEEEEECCCCEEEEEEEECCC
T ss_conf 7516860100122300322066257517833165246335787588247600461135620797168588840685560
No 136
>TIGR01208 rmlA_long glucose-1-phosphate thymidylyltransferase; InterPro: IPR005908 Synonym: dTDP-D-glucose synthase This group of proteins comprises a tightly conserved but broadly distributed subfamily of known and putative bacterial glucose-1-phosphate thymidylyltransferases (2.7.7.24 from EC). It is well characterised in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. dTTP + alpha-D-glucose 1-phosphate = diphosphate + dTDP-glucose The family of known and putative glucose-1-phosphate thymidyltransferases shows a deep split into a short form (see IPR005907 from INTERPRO) and a long form described by this model. The homotetrameric short form is found in numerous bacterial species that incorporate dTDP-L-rhamnose, which it helps synthesize, into the cell wall. It is subject to feedback inhibition. The long form, in contrast, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. .
Probab=98.64 E-value=2.2e-08 Score=64.33 Aligned_cols=70 Identities=19% Similarity=0.313 Sum_probs=41.5
Q ss_pred CCCCCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCC-HHCCCCCCCCCCCCCEEEEEEEEEEEECCCC
Q ss_conf 33100156532334420000110011232033112210000-0002332100233220233100244201000
Q gi|254780771|r 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGS-VIGAGVRIGRNCSIGAGSSIYSSLIGNSVIL 190 (347)
Q Consensus 119 I~~~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~-~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I 190 (347)
....+.|.-.++|++++.|.-+++|..-++||+||+| .+| +||+.+.||++++|. ++.+.+|+|.+.|.|
T Consensus 251 ~~~~s~i~GRV~v~~gakid~ns~i~GPa~IG~d~~I-~nsGyiGPYtSig~~~~I~-d~~vE~S~vldes~I 321 (361)
T TIGR01208 251 VDDESKIEGRVEVGEGAKIDVNSVIRGPAVIGEDCII-ENSGYIGPYTSIGEGVVIR-DAEVEHSIVLDESVI 321 (361)
T ss_pred EECCCEEEEEEEECCCCEECCCCEEECCEEECCCCEE-ECCCCCCCEEEECCCEEEE-CCCCCCEEEECCCEE
T ss_conf 3226578840790897884237778706087795278-2686117707725753874-163020356442114
No 137
>KOG1322 consensus
Probab=98.59 E-value=1.3e-08 Score=65.61 Aligned_cols=13 Identities=31% Similarity=0.560 Sum_probs=6.4
Q ss_pred EEECCHHHHHHHH
Q ss_conf 9961867677775
Q gi|254780771|r 51 SYIISRKFLNNIE 63 (347)
Q Consensus 51 sFi~~~kyl~~l~ 63 (347)
.|+-++.-+.++.
T Consensus 186 iYi~~~~vL~ri~ 198 (371)
T KOG1322 186 IYILNPEVLDRIL 198 (371)
T ss_pred EEEECHHHHHHHH
T ss_conf 8997799986765
No 138
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.58 E-value=2.5e-08 Score=63.99 Aligned_cols=66 Identities=17% Similarity=0.163 Sum_probs=44.4
Q ss_pred CCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 32033112210000000233210023322023310024420100000232134454335566653110444320000244
Q gi|254780771|r 146 GVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKV 225 (347)
Q Consensus 146 ~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vIG~~GFgf~~~~~~~~~~~~~G~v~Ig~~v 225 (347)
++.|+++|+|.. +.+ .++.|+++|.|+.+++|.+|+|..+|.|++||.|. +++|+.+|
T Consensus 331 nSli~~GcvI~G-~~V-enSVI~r~v~Ig~gA~V~nSIIm~~~~IG~ga~l~--------------------naIiDk~v 388 (431)
T PRK00725 331 NSLVSGGCIISG-SVV-VQSVLFTRVRVNSFSNIDSAVLLPEVWVGRSCRLR--------------------RCVIDRAC 388 (431)
T ss_pred CCEEECCEEEEC-CEE-EECCCCCCCEECCCCEEEEEEECCCCEECCCCEEE--------------------EEEECCCC
T ss_conf 679839989969-999-82982599899999899613988989889999997--------------------13989998
Q ss_pred CCCCCCCC
Q ss_conf 44544443
Q gi|254780771|r 226 EIGANSAI 233 (347)
Q Consensus 226 ~IG~n~tI 233 (347)
.||+++.|
T Consensus 389 ~I~~G~~I 396 (431)
T PRK00725 389 VIPEGMVI 396 (431)
T ss_pred EECCCCEE
T ss_conf 98989998
No 139
>KOG4750 consensus
Probab=98.58 E-value=2.5e-08 Score=64.05 Aligned_cols=33 Identities=27% Similarity=0.415 Sum_probs=16.2
Q ss_pred CCCCCEEEEEEEEEECCCEECCCCEEEECCEEE
Q ss_conf 035771886555650363656972973068783
Q gi|254780771|r 260 HIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIA 292 (347)
Q Consensus 260 ~iG~~~~~~~~~~~~g~~~ig~~~~ig~~~~i~ 292 (347)
+||++++|++++.+-|.++||+++.+|.++.+.
T Consensus 202 ~Igd~vliGaGvtILgnV~IGegavIaAGsvV~ 234 (269)
T KOG4750 202 KIGDNVLIGAGVTILGNVTIGEGAVIAAGSVVL 234 (269)
T ss_pred CCCCCEEECCCCEEECCEEECCCCEEECCCEEE
T ss_conf 556770875541785781677886773050697
No 140
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=98.57 E-value=1.4e-07 Score=59.98 Aligned_cols=32 Identities=19% Similarity=0.323 Sum_probs=15.8
Q ss_pred CEECCCCEEEECCEEECCEEECCCCEECCC-CEEE
Q ss_conf 365697297306878378598888898625-3260
Q gi|254780771|r 277 TYIGDNVLIGGQCGIAGYLKIGDNVQIASK-SGVL 310 (347)
Q Consensus 277 ~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~-s~v~ 310 (347)
++||+++++|.++.+.. -+..++++++. +.|.
T Consensus 143 V~IG~gavigagsVVtk--dvp~~~iv~G~Pa~vi 175 (190)
T COG0110 143 VTIGEGAVIGAGSVVTK--DVPPYGIVAGNPARVI 175 (190)
T ss_pred EEECCCEEEECCEEEEC--CCCCCEEEECCCCEEE
T ss_conf 59899819978858957--7799828979998898
No 141
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.46 E-value=2.1e-07 Score=58.97 Aligned_cols=13 Identities=23% Similarity=0.588 Sum_probs=8.0
Q ss_pred EECCHHHHHHHHH
Q ss_conf 9618676777754
Q gi|254780771|r 52 YIISRKFLNNIEK 64 (347)
Q Consensus 52 Fi~~~kyl~~l~~ 64 (347)
|+-+.+++.++..
T Consensus 197 YIf~~~~L~~~L~ 209 (393)
T COG0448 197 YIFNTDLLKELLE 209 (393)
T ss_pred EEECHHHHHHHHH
T ss_conf 9982999999999
No 142
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase; InterPro: IPR011831 This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2, beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this entry. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This entry describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.; GO: 0008878 glucose-1-phosphate adenylyltransferase activity.
Probab=98.40 E-value=2.2e-07 Score=58.88 Aligned_cols=40 Identities=18% Similarity=0.321 Sum_probs=21.3
Q ss_pred CCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEEC
Q ss_conf 320331122100000002332100233220233100244201
Q gi|254780771|r 146 GVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNS 187 (347)
Q Consensus 146 ~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~ 187 (347)
+..|+++|+|.. +.| .+++||.+++|+.+++|.+|+|..+
T Consensus 336 ~Slv~~Gc~i~g-~~v-~~SvL~~~v~i~~~~~v~dsVim~~ 375 (421)
T TIGR02091 336 DSLVAEGCIISG-ATV-SHSVLGSRVRIGSGSTVEDSVIMGD 375 (421)
T ss_pred EEEEECCCEECC-CEE-EEEEEECCCEECCCCEEEEEEECCC
T ss_conf 407756718807-678-7228526868546557988688798
No 143
>KOG1460 consensus
Probab=98.39 E-value=5.8e-07 Score=56.61 Aligned_cols=56 Identities=25% Similarity=0.397 Sum_probs=28.4
Q ss_pred CCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEC
Q ss_conf 23344200001100112320331122100000002332100233220233100244201000002321
Q gi|254780771|r 129 VKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRI 196 (347)
Q Consensus 129 a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vI 196 (347)
++|-.+|+|+|.+.+.+.++||.|+.|++++. +++++.+++|+|-++|.|..|+++
T Consensus 283 a~IigdVyIhPsakvhptAkiGPNVSIga~vr------------vg~GvRl~~sIIl~d~ei~enavV 338 (407)
T KOG1460 283 AEIIGDVYIHPSAKVHPTAKIGPNVSIGANVR------------VGPGVRLRESIILDDAEIEENAVV 338 (407)
T ss_pred CEEEEEEEECCCCEECCCCCCCCCCEECCCCE------------ECCCCEEEEEEECCCCEEECCCEE
T ss_conf 54874247767540477662089714468825------------468826654560267376216367
No 144
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase; InterPro: IPR011831 This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2, beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this entry. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This entry describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.; GO: 0008878 glucose-1-phosphate adenylyltransferase activity.
Probab=98.38 E-value=1.7e-07 Score=59.52 Aligned_cols=20 Identities=25% Similarity=0.514 Sum_probs=7.5
Q ss_pred EEEEEEEEEECCCCCEEEEC
Q ss_conf 33100244201000002321
Q gi|254780771|r 177 SSIYSSLIGNSVILHSGVRI 196 (347)
Q Consensus 177 ~~I~~~iIG~~~~I~~~~vI 196 (347)
++|.+|+||.++.|+++|+|
T Consensus 348 ~~v~~SvL~~~v~i~~~~~v 367 (421)
T TIGR02091 348 ATVSHSVLGSRVRIGSGSTV 367 (421)
T ss_pred CEEEEEEEECCCEECCCCEE
T ss_conf 67872285268685465579
No 145
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.35 E-value=5e-07 Score=56.94 Aligned_cols=11 Identities=18% Similarity=0.353 Sum_probs=5.6
Q ss_pred CEEEEECHHHH
Q ss_conf 56999887761
Q gi|254780771|r 67 ASAIICSQDIV 77 (347)
Q Consensus 67 A~aiI~~~d~~ 77 (347)
-+..|+..++.
T Consensus 194 MgiYIf~~~~L 204 (393)
T COG0448 194 MGIYIFNTDLL 204 (393)
T ss_pred EEEEEECHHHH
T ss_conf 56699829999
No 146
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=98.27 E-value=2.1e-06 Score=53.60 Aligned_cols=87 Identities=17% Similarity=0.364 Sum_probs=70.3
Q ss_pred CCCHHHHHHHHCCEEECCCCCCEEECCCC-CHHHCCCCCEEEEC-------CHHHHHHHHHCCCEEEEECHHHHHCCCCC
Q ss_conf 80399999984669955776633871567-98888998699961-------86767777545856999887761014445
Q gi|254780771|r 12 GIALMKLAQSIGASLLDENFGERMIYSLS-PIARASTGDISYII-------SRKFLNNIEKCKASAIICSQDIVPFIPKN 83 (347)
Q Consensus 12 ~~sl~eIa~~l~~~l~g~~~~d~~I~~I~-~l~~A~~~~IsFi~-------~~kyl~~l~~s~A~aiI~~~d~~~~~~~~ 83 (347)
+++|+|||+.+++++.+. |.+|++|+ +-...++++| |+. -..|++......|.+++++... +.+
T Consensus 3 ~~~l~~ia~~~~g~l~~~---d~~i~~i~~DSR~v~~g~l-FvAl~G~~~DGh~fi~~Ai~~GA~aiv~~~~~----~~~ 74 (452)
T PRK10773 3 SVTLSQLADILNAELQGA---DITIDAVTTDTRKVTPGCL-FVALKGERFDAHDFADQAKAAGAGALLVSRPL----DID 74 (452)
T ss_pred CCCHHHHHHHHCCEEECC---CCCEEEEEECCCCCCCCCE-EEEECCCCCCHHHHHHHHHHCCCEEEEECCCC----CCC
T ss_conf 476999999869999889---8157789965871799988-99944798997999999998699899984766----899
Q ss_pred CCCEECCCCCHHHHHHCCCCCCC
Q ss_conf 53100123201122101211122
Q gi|254780771|r 84 IPCLLSDKPEVSFAIAGSILYPQ 106 (347)
Q Consensus 84 ~~~Iiv~nP~~afA~i~~~l~~~ 106 (347)
.+.++|+|++.+++++..+++++
T Consensus 75 ~~~i~V~d~~~al~~la~~~~~~ 97 (452)
T PRK10773 75 LPQLIVKDTRLAFGQLAAWVRQQ 97 (452)
T ss_pred CCEEEECCHHHHHHHHHHHHHHC
T ss_conf 99899899999999999987515
No 147
>TIGR01208 rmlA_long glucose-1-phosphate thymidylyltransferase; InterPro: IPR005908 Synonym: dTDP-D-glucose synthase This group of proteins comprises a tightly conserved but broadly distributed subfamily of known and putative bacterial glucose-1-phosphate thymidylyltransferases (2.7.7.24 from EC). It is well characterised in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. dTTP + alpha-D-glucose 1-phosphate = diphosphate + dTDP-glucose The family of known and putative glucose-1-phosphate thymidyltransferases shows a deep split into a short form (see IPR005907 from INTERPRO) and a long form described by this model. The homotetrameric short form is found in numerous bacterial species that incorporate dTDP-L-rhamnose, which it helps synthesize, into the cell wall. It is subject to feedback inhibition. The long form, in contrast, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. .
Probab=98.23 E-value=7e-07 Score=56.15 Aligned_cols=69 Identities=30% Similarity=0.403 Sum_probs=46.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEHHHCCCCCCEEEECC-CCCCCCHHCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 57654333100156532334420000110011232033112-210000000233210023322023310024
Q gi|254780771|r 113 SSFEGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKT-YVGPGSVIGAGVRIGRNCSIGAGSSIYSSL 183 (347)
Q Consensus 113 ~~~~~~I~~~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~-~I~~~~~I~~~~~IG~~~~I~~~~~I~~~i 183 (347)
....+.|.--..|++.|+|.-+..|.--|+||+||.| +|| +|+|++.|+.++.| ++|.+....++.+|+
T Consensus 251 ~~~~s~i~GRV~v~~gakid~ns~i~GPa~IG~d~~I-~nsGyiGPYtSig~~~~I-~d~~vE~S~vldes~ 320 (361)
T TIGR01208 251 VDDESKIEGRVEVGEGAKIDVNSVIRGPAVIGEDCII-ENSGYIGPYTSIGEGVVI-RDAEVEHSIVLDESV 320 (361)
T ss_pred EECCCEEEEEEEECCCCEECCCCEEECCEEECCCCEE-ECCCCCCCEEEECCCEEE-ECCCCCCEEEECCCE
T ss_conf 3226578840790897884237778706087795278-268611770772575387-416302035644211
No 148
>KOG4042 consensus
Probab=98.15 E-value=8e-06 Score=50.41 Aligned_cols=45 Identities=16% Similarity=0.355 Sum_probs=26.0
Q ss_pred EECCCCEEEECCEEECCEEECCCCEECCCCEEE--EEECCCCEEEEE
Q ss_conf 656972973068783785988888986253260--000798789982
Q gi|254780771|r 278 YIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVL--KDIPAGQQYGGM 322 (347)
Q Consensus 278 ~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~--~~v~~~~~~~G~ 322 (347)
.+||+-.|+..+-+-+++.+-+++.+||++.+. +++|++..+.|-
T Consensus 97 kvGd~NVieskayvg~gv~vssgC~vGA~c~v~~~q~lpent~vYga 143 (190)
T KOG4042 97 KVGDRNVIESKAYVGDGVSVSSGCSVGAKCTVFSHQNLPENTSVYGA 143 (190)
T ss_pred HHCCCCEEEEEEEECCCCEECCCCEECCCEEEECCCCCCCCCEEECC
T ss_conf 51676547666686499487279654140577110346975168721
No 149
>KOG3121 consensus
Probab=98.05 E-value=2.2e-06 Score=53.50 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=9.3
Q ss_pred EEEEECCCCCEEEECC
Q ss_conf 2442010000023213
Q gi|254780771|r 182 SLIGNSVILHSGVRIG 197 (347)
Q Consensus 182 ~iIG~~~~I~~~~vIG 197 (347)
-.|||++-|+.++|+-
T Consensus 85 ~hiGdhVFieE~cVVn 100 (184)
T KOG3121 85 VHIGDHVFIEEECVVN 100 (184)
T ss_pred EEECCEEEEECCEEEE
T ss_conf 6524568870441862
No 150
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit; InterPro: IPR011832 This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, IPR011831 from INTERPRO) in a subset of bacteria that use GlgC for glycogen biosynthesis.; GO: 0005978 glycogen biosynthetic process.
Probab=97.95 E-value=5.7e-06 Score=51.19 Aligned_cols=78 Identities=21% Similarity=0.312 Sum_probs=55.2
Q ss_pred CCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 32033112210000000233210023322023310024420100000232134454335566653110444320000244
Q gi|254780771|r 146 GVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKV 225 (347)
Q Consensus 146 ~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vIG~~GFgf~~~~~~~~~~~~~G~v~Ig~~v 225 (347)
+..++.||+|.-.+ .|+.|+++..|+..+.|.+|+|.-+|.|++||.+ -.||+.++|
T Consensus 303 nSl~anGc~IEG~V---~NSil~R~V~v~kd~~~kn~iimq~~~Ig~ga~L--------------------~~vI~DK~~ 359 (383)
T TIGR02092 303 NSLVANGCIIEGKV---ENSILSRGVYVGKDALIKNSIIMQRTVIGEGAHL--------------------ENVIIDKDV 359 (383)
T ss_pred EEEEECCCEECCEE---EEEEEECCEEECCCCEEEEEEECCCCEECCCCEE--------------------EEEEECCCC
T ss_conf 66676263561488---5579855418727867875477588777878656--------------------158865762
Q ss_pred CCCCCCCCCCCCC-CCCCCCCCC
Q ss_conf 4454444332222-221111122
Q gi|254780771|r 226 EIGANSAIDRGTI-DDTIIGENT 247 (347)
Q Consensus 226 ~IG~n~tIdrg~~-~~t~Ig~~~ 247 (347)
.|+.|..|. |+- .+-+|-++.
T Consensus 360 ~I~~n~~~~-G~~e~PlVi~Kg~ 381 (383)
T TIGR02092 360 VIEPNEKIA-GTSEQPLVISKGK 381 (383)
T ss_pred EECCCEEEE-ECCCCCEEECCCC
T ss_conf 878870685-2478862644876
No 151
>KOG4042 consensus
Probab=97.94 E-value=3.5e-06 Score=52.34 Aligned_cols=55 Identities=11% Similarity=0.280 Sum_probs=38.7
Q ss_pred CCCCCEEEEEEEEEECCCEECCCCEEEECCEEECCEEECCCCEECCCCEEEEEEC
Q ss_conf 0357718865556503636569729730687837859888889862532600007
Q gi|254780771|r 260 HIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIP 314 (347)
Q Consensus 260 ~iG~~~~~~~~~~~~g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~v~ 314 (347)
.+|++.++-..+-++-.+.+-++|.+|....+..+-++..++.+.+.....|...
T Consensus 97 kvGd~NVieskayvg~gv~vssgC~vGA~c~v~~~q~lpent~vYga~~L~R~~~ 151 (190)
T KOG4042 97 KVGDRNVIESKAYVGDGVSVSSGCSVGAKCTVFSHQNLPENTSVYGATNLSRTTK 151 (190)
T ss_pred HHCCCCEEEEEEEECCCCEECCCCEECCCEEEECCCCCCCCCEEECCCCCCCEEC
T ss_conf 5167654766668649948727965414057711034697516872134010002
No 152
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=97.74 E-value=7.7e-05 Score=45.08 Aligned_cols=16 Identities=13% Similarity=0.397 Sum_probs=12.0
Q ss_pred CCEECCCCCCCCCCCC
Q ss_conf 2000024444544443
Q gi|254780771|r 218 RVIIQDKVEIGANSAI 233 (347)
Q Consensus 218 ~v~Ig~~v~IG~n~tI 233 (347)
+|++|++..||-.++|
T Consensus 224 GVvVg~gsDiGGgaSi 239 (341)
T TIGR03536 224 GVMVGKGSDLGGGCST 239 (341)
T ss_pred CEEECCCCCCCCCEEE
T ss_conf 4696678766775024
No 153
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=97.65 E-value=0.00018 Score=43.03 Aligned_cols=29 Identities=28% Similarity=0.464 Sum_probs=17.0
Q ss_pred CEECCCCEEEECCEEECCEEECCCCEECC
Q ss_conf 36569729730687837859888889862
Q gi|254780771|r 277 TYIGDNVLIGGQCGIAGYLKIGDNVQIAS 305 (347)
Q Consensus 277 ~~ig~~~~ig~~~~i~~~v~ig~~~~i~a 305 (347)
..+|+++.+-+...-...+.++.++.+-+
T Consensus 207 i~vg~n~~i~g~v~~Rg~v~~~~n~evlG 235 (277)
T COG4801 207 ILVGNNEPIHGPVANRGFVKTISNVEVLG 235 (277)
T ss_pred EEEECCCCCCCCCCCCEEEEECCCEEEEC
T ss_conf 68714864136545624899614508952
No 154
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=97.61 E-value=9.6e-05 Score=44.56 Aligned_cols=16 Identities=31% Similarity=0.638 Sum_probs=11.1
Q ss_pred CCEECCCCCCCCCCCC
Q ss_conf 2000024444544443
Q gi|254780771|r 218 RVIIQDKVEIGANSAI 233 (347)
Q Consensus 218 ~v~Ig~~v~IG~n~tI 233 (347)
+|++|++..||-.+.|
T Consensus 199 gvvvg~gsDiGGgaS~ 214 (319)
T TIGR03535 199 GVVVGDGSDIGGGASI 214 (319)
T ss_pred CEEECCCCCCCCCCEE
T ss_conf 4696678766775011
No 155
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=97.57 E-value=4.7e-05 Score=46.24 Aligned_cols=33 Identities=18% Similarity=0.390 Sum_probs=21.2
Q ss_pred CEECCCCEEEECCEEECCEEECCCCEECCCCEEEE
Q ss_conf 36569729730687837859888889862532600
Q gi|254780771|r 277 TYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLK 311 (347)
Q Consensus 277 ~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~ 311 (347)
..||++|.+|.+++ -++.+||+|+|-||-.||.
T Consensus 251 isiG~~cLlGANsg--~GI~LGD~C~veaGlyvta 283 (341)
T TIGR03536 251 ISVGEGCLLGANAG--IGIPLGDRCTVEAGLYITA 283 (341)
T ss_pred EEECCCCCCCCCCC--CCCCCCCCCEEECCEEEEC
T ss_conf 88873220144455--5742489847812449927
No 156
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=97.30 E-value=0.00015 Score=43.48 Aligned_cols=32 Identities=25% Similarity=0.425 Sum_probs=18.2
Q ss_pred CEECCCCEEEECCEEECCEEECCCCEECCCCEEE
Q ss_conf 3656972973068783785988888986253260
Q gi|254780771|r 277 TYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVL 310 (347)
Q Consensus 277 ~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~ 310 (347)
..||++|.+|.+++ -++-+||+|+|-||-.||
T Consensus 226 isiG~~cLlGANsG--iGI~LGD~C~VeaGlyit 257 (319)
T TIGR03535 226 ISIGERCLLGANSG--IGISLGDDCVVEAGLYVT 257 (319)
T ss_pred EEECCCCEECCCCC--CCCCCCCCCEEECCEEEC
T ss_conf 78865320045455--574358971781122881
No 157
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit; InterPro: IPR011832 This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, IPR011831 from INTERPRO) in a subset of bacteria that use GlgC for glycogen biosynthesis.; GO: 0005978 glycogen biosynthetic process.
Probab=97.10 E-value=0.00027 Score=42.15 Aligned_cols=62 Identities=21% Similarity=0.387 Sum_probs=32.0
Q ss_pred CCCEEHHHCCC---CCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEC
Q ss_conf 20000110011---2320331122100000002332100233220233100244201000002321
Q gi|254780771|r 134 GVVIAPMAVVY---PGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRI 196 (347)
Q Consensus 134 ~v~I~~~~~I~---~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vI 196 (347)
+..++.+|+|+ +|++|..++.|+..+.|. ||.|=.+|.|+.++.+.+-++=.++.|++|.+|
T Consensus 303 nSl~anGc~IEG~V~NSil~R~V~v~kd~~~k-n~iimq~~~Ig~ga~L~~vI~DK~~~I~~n~~~ 367 (383)
T TIGR02092 303 NSLVANGCIIEGKVENSILSRGVYVGKDALIK-NSIIMQRTVIGEGAHLENVIIDKDVVIEPNEKI 367 (383)
T ss_pred EEEEECCCEECCEEEEEEEECCEEECCCCEEE-EEEECCCCEECCCCEEEEEEECCCCEECCCEEE
T ss_conf 66676263561488557985541872786787-547758877787865615886576287887068
No 158
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=97.08 E-value=0.0014 Score=38.29 Aligned_cols=43 Identities=28% Similarity=0.386 Sum_probs=20.8
Q ss_pred ECCCCCCCCHHCCCCCCCCCCCCCEEEEE------EEEE-EEECCCCCEE
Q ss_conf 11221000000023321002332202331------0024-4201000002
Q gi|254780771|r 151 RKTYVGPGSVIGAGVRIGRNCSIGAGSSI------YSSL-IGNSVILHSG 193 (347)
Q Consensus 151 ~~~~I~~~~~I~~~~~IG~~~~I~~~~~I------~~~i-IG~~~~I~~~ 193 (347)
.++.|..+|.++.|+..+.+.+|+.+++| .++. ||+++.|..+
T Consensus 55 ~diridmw~kv~gNV~ve~dayiGE~~sI~gkl~v~gdLdig~dV~Iegg 104 (277)
T COG4801 55 KDIRIDMWCKVTGNVIVENDAYIGEFSSIKGKLTVIGDLDIGADVIIEGG 104 (277)
T ss_pred CCEEEEEEEEEECCEEECCCEEEECCCEEEEEEEEECCCCCCCCEEEECC
T ss_conf 11366215675231898474077033024016999533235651687567
No 159
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional
Probab=96.57 E-value=0.0034 Score=36.18 Aligned_cols=87 Identities=17% Similarity=0.344 Sum_probs=65.9
Q ss_pred CCCHHHHHHHHCCEEECCCCCCEEECCCC-CHHHCCCCCEEEEC-------CHHHHHHHHHCCCEEEEECHHHHHCCCCC
Q ss_conf 80399999984669955776633871567-98888998699961-------86767777545856999887761014445
Q gi|254780771|r 12 GIALMKLAQSIGASLLDENFGERMIYSLS-PIARASTGDISYII-------SRKFLNNIEKCKASAIICSQDIVPFIPKN 83 (347)
Q Consensus 12 ~~sl~eIa~~l~~~l~g~~~~d~~I~~I~-~l~~A~~~~IsFi~-------~~kyl~~l~~s~A~aiI~~~d~~~~~~~~ 83 (347)
.|+|++|++.+... ...|.+|++|+ +-...++++| |+. -.+|++.+....|.+++++.+ .+.+
T Consensus 2 ~~~l~~ll~~~~~~----~~~d~~i~gis~DSR~v~~g~l-Fval~G~~~DGh~fi~~Ai~~GA~avv~~~~----~~~~ 72 (481)
T PRK00139 2 MMKLRDLLAPLKAD----HVLDVEITGLTYDSRKVKPGDL-FVALPGHKVDGRDFIAQAIANGAAAVVAEPD----VEAA 72 (481)
T ss_pred CCCHHHHHHHCCCC----CCCCCCEEEEEECCCCCCCCCE-EEEECCCCCCHHHHHHHHHHCCCEEEEECCC----CCCC
T ss_conf 64689986236656----7888777799963771899978-9991667789899999999869979998477----6789
Q ss_pred CCCEECCCCCHHHHHHCCCCCCCC
Q ss_conf 531001232011221012111222
Q gi|254780771|r 84 IPCLLSDKPEVSFAIAGSILYPQA 107 (347)
Q Consensus 84 ~~~Iiv~nP~~afA~i~~~l~~~~ 107 (347)
.+.|.|+|++.+++++...||.+.
T Consensus 73 ~~~i~V~d~~~al~~la~~~y~~~ 96 (481)
T PRK00139 73 VPVIVVPDLRRALALLAAAFYGNP 96 (481)
T ss_pred CCEEEECCHHHHHHHHHHHHHCCC
T ss_conf 859998999999999999987080
No 160
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=96.32 E-value=0.0084 Score=34.04 Aligned_cols=94 Identities=12% Similarity=0.166 Sum_probs=66.5
Q ss_pred CCCHHHHHHHHCCEEECCC-CCCEEECCCCC-HHHCC--CCCEEEEC------CHHHHHHHHHCCCEEEEECHHHHHCCC
Q ss_conf 8039999998466995577-66338715679-88889--98699961------867677775458569998877610144
Q gi|254780771|r 12 GIALMKLAQSIGASLLDEN-FGERMIYSLSP-IARAS--TGDISYII------SRKFLNNIEKCKASAIICSQDIVPFIP 81 (347)
Q Consensus 12 ~~sl~eIa~~l~~~l~g~~-~~d~~I~~I~~-l~~A~--~~~IsFi~------~~kyl~~l~~s~A~aiI~~~d~~~~~~ 81 (347)
.+++++|+..++++..|+. ..|..|+.|+. -.+.+ +++|-|.- -..|++.+....|.++++++.......
T Consensus 2 ~~~~~~i~~~~g~~~~g~~~~~~~~I~~i~tDSR~l~~~~~~LFvAL~Ger~DGH~fi~~A~~~GA~~~vv~~~~~~~~~ 81 (824)
T PRK11930 2 SISIEELIRVLGANRVGGKTEFDAFIDQLLIDSRSLSFPENTLFFALKGKRNDGHRYIQELYEKGVRNFVVSEIPKDLME 81 (824)
T ss_pred CEEHHHHHHHHCCEEECCCCCCCCEECEEEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf 04099999863978857888888323639935887657998689995678888799999999889909999456655455
Q ss_pred -CCCCCEECCCCCHHHHHHCCCCCC
Q ss_conf -455310012320112210121112
Q gi|254780771|r 82 -KNIPCLLSDKPEVSFAIAGSILYP 105 (347)
Q Consensus 82 -~~~~~Iiv~nP~~afA~i~~~l~~ 105 (347)
...++|.|+|+..|+.++.+..+.
T Consensus 82 ~~~~~~i~V~Dtl~ALq~LA~~~R~ 106 (824)
T PRK11930 82 KKPANFLIVKNPLKALQKLAAYYRK 106 (824)
T ss_pred CCCCCEEEECCHHHHHHHHHHHHHH
T ss_conf 7887789989899999999999997
No 161
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=95.27 E-value=0.022 Score=31.78 Aligned_cols=70 Identities=16% Similarity=0.252 Sum_probs=43.0
Q ss_pred ECCC-CCHHHCCCCCEEEEC-------CHHHHHHHHHCCCEEEEECHHHHHCCCCCCCCEECCCCCHHHHHHCCCCCCC
Q ss_conf 7156-798888998699961-------8676777754585699988776101444553100123201122101211122
Q gi|254780771|r 36 IYSL-SPIARASTGDISYII-------SRKFLNNIEKCKASAIICSQDIVPFIPKNIPCLLSDKPEVSFAIAGSILYPQ 106 (347)
Q Consensus 36 I~~I-~~l~~A~~~~IsFi~-------~~kyl~~l~~s~A~aiI~~~d~~~~~~~~~~~Iiv~nP~~afA~i~~~l~~~ 106 (347)
|.+| .+-...+|++| |+. -.+|++.+....|.+++++.+.....|.+++.|.|+|++.+++++...||..
T Consensus 29 ~~~it~DSR~V~~G~l-FvAl~G~~~DGh~fi~~Ai~~GA~aiv~e~~~~~~~~~~~~~i~V~d~r~al~~la~~fy~~ 106 (953)
T PRK11929 29 TADLRLDSREVAPGDV-FVACRGGASDGRAFIDQALARGAAVVIYEAEGAPVAPAGCLALPVADLRKALGELADEWYGK 106 (953)
T ss_pred CCCCCCCCCCCCCCCE-EEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCC
T ss_conf 4556566541799998-99945287788999999998699799991664444678971999798999999999998649
No 162
>pfam07959 Fucokinase L-fucokinase. In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase.
Probab=90.99 E-value=0.52 Score=24.32 Aligned_cols=18 Identities=33% Similarity=0.720 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCCEEEEEE
Q ss_conf 344446503577188655
Q gi|254780771|r 253 VQIGHNVHIGCGCIIVSQ 270 (347)
Q Consensus 253 v~i~hn~~iG~~~~~~~~ 270 (347)
+|++-+++||.+|++.+-
T Consensus 302 c~l~~~~~Ig~~cIlsg~ 319 (414)
T pfam07959 302 SHLGGPVRIGSNCIVSGV 319 (414)
T ss_pred EECCCCCEECCCCEEECC
T ss_conf 363898388788558567
No 163
>pfam01225 Mur_ligase Mur ligase family, catalytic domain. This family contains a number of related ligase enzymes which have EC numbers 6.3.2.*. This family includes: MurC, MurD, MurE, MurF, Mpl and FolC. MurC, MurD, Mure and MurF catalyse consecutive steps in the synthesis of peptidoglycan. Peptidoglycan consists of a sheet of two sugar derivatives, with one of these N-acetylmuramic acid attaching to a small pentapeptide. The pentapeptide is is made of L-alanine, D-glutamic acid, Meso-diaminopimelic acid and D-alanyl alanine. The peptide moiety is synthesized by successively adding these amino acids to UDP-N-acetylmuramic acid. MurC transfers the L-alanine, MurD transfers the D-glutamate, MurE transfers the diaminopimelic acid, and MurF transfers the D-alanyl alanine. This family also includes Folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate.
Probab=89.88 E-value=0.45 Score=24.66 Aligned_cols=61 Identities=15% Similarity=0.077 Sum_probs=43.6
Q ss_pred HHCCCCCEEEE------CCHHHHHHHHHCCCEEEEECHHHHHCCCCCCCCEECCCCCHHHHHHCCCCC
Q ss_conf 88899869996------186767777545856999887761014445531001232011221012111
Q gi|254780771|r 43 ARASTGDISYI------ISRKFLNNIEKCKASAIICSQDIVPFIPKNIPCLLSDKPEVSFAIAGSILY 104 (347)
Q Consensus 43 ~~A~~~~IsFi------~~~kyl~~l~~s~A~aiI~~~d~~~~~~~~~~~Iiv~nP~~afA~i~~~l~ 104 (347)
...+++++-|. +-.+|++.+.+..|.+++++... ...+.+.+.|.++|++.+++++...||
T Consensus 10 r~v~~g~lF~a~~G~~~dG~~fi~~a~~~GA~ai~~~~~~-~~~~~~~~~i~v~d~~~aL~~la~~fy 76 (76)
T pfam01225 10 RGMSPGALFLALKGYRVDGSDFAESAIALGAVAVVSSAIP-RDPNPEVPGIPVIDRREALAELAARFY 76 (76)
T ss_pred CCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCC-CCCCCCCCEEEECCHHHHHHHHHHHHC
T ss_conf 7279999999807786799999999998099899993654-567999739998999999999999769
No 164
>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetases; InterPro: IPR005761 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents DP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligases (MurE; 6.3.2.13 from EC). An exception is found with Staphylococcus aureus, in which diaminopimelate is replaced by lysine in the peptidoglycan and MurE is (6.3.2.7 from EC). The Mycobacteria, part of the closest neighbouring branch outside of the low-GC Gram-positive bacteria, use diaminopimelate.; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=84.45 E-value=1.5 Score=21.76 Aligned_cols=83 Identities=11% Similarity=0.264 Sum_probs=60.8
Q ss_pred EEECCCC-CHHHCCCCCEEEEC-------CHHHHHHHHHCCCEEEEECHHHHHCCCC--CCCCEECCCC-CHHHHHHCCC
Q ss_conf 3871567-98888998699961-------8676777754585699988776101444--5531001232-0112210121
Q gi|254780771|r 34 RMIYSLS-PIARASTGDISYII-------SRKFLNNIEKCKASAIICSQDIVPFIPK--NIPCLLSDKP-EVSFAIAGSI 102 (347)
Q Consensus 34 ~~I~~I~-~l~~A~~~~IsFi~-------~~kyl~~l~~s~A~aiI~~~d~~~~~~~--~~~~Iiv~nP-~~afA~i~~~ 102 (347)
.+|++|+ +-...++|++ |+. -.+|++.+....|.+++++.+.. +.+. ....|.++++ +...+.++..
T Consensus 2 ~~~~~l~~~S~~V~~G~~-F~A~~G~~~DG~~fi~~A~~~GA~aVv~e~~~~-~~~~~~~V~~i~~~d~~r~~~~~~A~~ 79 (494)
T TIGR01085 2 LEVTGLTLDSREVKPGDL-FVAIKGTKVDGHDFIEEAIENGAVAVVVEREVD-YVAGRAGVPVIIVPDLKRHALSSLAAA 79 (494)
T ss_pred CEEECCCCCHHHCCCCCE-EEEECCCCCCHHHHHHHHHHCCCEEEEECCCCC-CCCCCCCCEEEEECCHHHHHHHHHHHH
T ss_conf 603110013001279967-897125655848889999872988999806011-276434610799623135888999999
Q ss_pred CCCCCCCCCCCCCCCC
Q ss_conf 1122211235576543
Q gi|254780771|r 103 LYPQAMHMEASSFEGG 118 (347)
Q Consensus 103 l~~~~~~~~~~~~~~~ 118 (347)
||..-.+.-..-..++
T Consensus 80 fY~~Ps~~l~viGvTG 95 (494)
T TIGR01085 80 FYGHPSKKLKVIGVTG 95 (494)
T ss_pred HHCCCCCCEEEEEEEE
T ss_conf 7348552516899971
No 165
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; InterPro: IPR005863 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF, 6.3.2.15 from EC), which is required to catalyze the final step in the synthesis of the cytoplasmic precursor of the bacterial cell wall peptidoglycan. ATP + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate + D-alanyl-D-alanine = ADP + phosphate + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanyl-D-alanine.. The crystal structure of the MurF apo-enzyme has been determined and refined to 2.3 A resolution. It contains three consecutive open alpha/beta-sheet domains. The topology of the N-terminal domain of MurF is unique, while its central and C-terminal domains exhibit similar mononucleotide and dinucleotide-binding folds to MurD. The apo-enzyme of MurF crystal structure reveals an open conformation with the three domains juxtaposed in a crescent-like arrangement creating a wide-open space where substrates are expected to bind. As such, catalysis is not feasible and significant domain closure is expected upon substrate binding . ; GO: 0005524 ATP binding, 0008766 UDP-N-acetylmuramoylalanyl-D-glutamyl-26-diaminopimelate-D-alanyl-D-alanine ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=62.98 E-value=6.2 Score=18.49 Aligned_cols=62 Identities=16% Similarity=0.289 Sum_probs=45.9
Q ss_pred HHCCCCCEEEEC-------CHHHHHHHHHCCCEEEEECHHHHH-----CCCCCCCCEECCCC-CHHHHHHCCCCCC
Q ss_conf 888998699961-------867677775458569998877610-----14445531001232-0112210121112
Q gi|254780771|r 43 ARASTGDISYII-------SRKFLNNIEKCKASAIICSQDIVP-----FIPKNIPCLLSDKP-EVSFAIAGSILYP 105 (347)
Q Consensus 43 ~~A~~~~IsFi~-------~~kyl~~l~~s~A~aiI~~~d~~~-----~~~~~~~~Iiv~nP-~~afA~i~~~l~~ 105 (347)
....+++| |+. -..|++++-...|.+++++.+... ..+.....|+|+|+ +.|+.++......
T Consensus 4 R~~~~g~L-F~AL~G~~fDGH~F~~~A~~~GA~Avl~~r~v~~e~~~~~~~~~~~~~~V~DtV~~AL~~lA~~~~~ 78 (462)
T TIGR01143 4 RAIKPGDL-FIALKGERFDGHDFVEQALAAGAVAVLVDREVESEVVKYNPDNGLPQILVDDTVLAALQALASAKRE 78 (462)
T ss_pred CEECCCEE-EEECCCCCCCHHHHHHHHHHCCCEEEEEEECCCEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHH
T ss_conf 43158704-7506889986346799998579669999707770575103799852899806589999999999997
No 166
>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=56.25 E-value=14 Score=16.59 Aligned_cols=91 Identities=15% Similarity=0.236 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHCCEEECCCCCCEEECCCC-CHHHCCCCCEEEEC------CHHHHHHHHHCCCEEEEECHHHHHCCCCCC
Q ss_conf 80399999984669955776633871567-98888998699961------867677775458569998877610144455
Q gi|254780771|r 12 GIALMKLAQSIGASLLDENFGERMIYSLS-PIARASTGDISYII------SRKFLNNIEKCKASAIICSQDIVPFIPKNI 84 (347)
Q Consensus 12 ~~sl~eIa~~l~~~l~g~~~~d~~I~~I~-~l~~A~~~~IsFi~------~~kyl~~l~~s~A~aiI~~~d~~~~~~~~~ 84 (347)
.+++.+++..+++.+.+... ..+++++ +.....++++-|.- ...|++.+....|.+++++.+.....-. .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~--~~~~~v~~Dsr~v~~g~lF~al~G~~~Dgh~fi~~A~~~GA~a~~v~r~~~~~~~~-~ 78 (451)
T COG0770 2 LLTLDELADILGGALVGADP--VVVSGVSIDSRKVKPGDLFVALKGERFDGHDFIEQALAAGAAAVLVARPVLPPAIP-L 78 (451)
T ss_pred CCCHHHHHHHHCCCCCCCCC--CCEEEEEEECCCCCCCCEEEECCCCCCCCCCHHHHHHHCCCEEEEEECCCCCCCCC-C
T ss_conf 30089999971781136740--00106995246678885238716763564221889984597799992576786656-5
Q ss_pred CCEECCCCCHHHHHHCCCCCC
Q ss_conf 310012320112210121112
Q gi|254780771|r 85 PCLLSDKPEVSFAIAGSILYP 105 (347)
Q Consensus 85 ~~Iiv~nP~~afA~i~~~l~~ 105 (347)
..+.+++-+.++.++......
T Consensus 79 ~~~~V~d~~~al~~la~~~~~ 99 (451)
T COG0770 79 VVLLVLDTLEALGKLAKAYRQ 99 (451)
T ss_pred CEEEEHHHHHHHHHHHHHHHH
T ss_conf 258759999999999999997
No 167
>COG1510 Predicted transcriptional regulators [Transcription]
Probab=37.83 E-value=21 Score=15.61 Aligned_cols=21 Identities=29% Similarity=0.567 Sum_probs=18.0
Q ss_pred CCCCCCCCCHHHHHHHHCCEE
Q ss_conf 446778803999999846699
Q gi|254780771|r 6 FFVSHKGIALMKLAQSIGASL 26 (347)
Q Consensus 6 Ff~~~~~~sl~eIa~~l~~~l 26 (347)
-|.+.+|++++||++.++...
T Consensus 35 lyls~~Pmtl~Ei~E~lg~Sk 55 (177)
T COG1510 35 LYLSRKPLTLDEIAEALGMSK 55 (177)
T ss_pred HEECCCCCCHHHHHHHHCCCC
T ss_conf 000699966999999977780
No 168
>KOG1344 consensus
Probab=33.46 E-value=11 Score=17.05 Aligned_cols=45 Identities=24% Similarity=0.335 Sum_probs=36.4
Q ss_pred CCCHHHCCCCCEEEECCHHHHHHHHHCCCEEEEECHHHHHCCCCC
Q ss_conf 679888899869996186767777545856999887761014445
Q gi|254780771|r 39 LSPIARASTGDISYIISRKFLNNIEKCKASAIICSQDIVPFIPKN 83 (347)
Q Consensus 39 I~~l~~A~~~~IsFi~~~kyl~~l~~s~A~aiI~~~d~~~~~~~~ 83 (347)
+-+..++++.+|.-++..+|++.+..+-+.+.|++-.+...+|.-
T Consensus 60 lvEp~e~t~e~L~rvHtr~YLkslr~s~~vA~I~EiP~v~flPn~ 104 (324)
T KOG1344 60 LVEPNEATKEDLLRVHTRKYLKSLRWSIKVAQITEIPFVGFLPNC 104 (324)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHH
T ss_conf 116763577777767569999971050004678852530247606
No 169
>pfam02395 Peptidase_S6 Immunoglobulin A1 protease. This family consists of immunoglobulin A1 protease proteins. The immunoglobulin A1 protease cleaves immunoglobulin IgA and is found in pathogenic bacteria such as Neisseria gonorrhoeae. Not all of the members of this family are IgA proteases; a member from E. coli O157:H7 cleaves human coagulation factor V and another member is a hemoglobin protease from E. coli EB1.
Probab=27.20 E-value=43 Score=13.94 Aligned_cols=63 Identities=30% Similarity=0.447 Sum_probs=30.9
Q ss_pred CCCCCEEEEEEEEEE-CCCEECCCCEEEEC-CEEECCEEECCCCEECCC--CEEE---EEECCCCEEEEE
Q ss_conf 035771886555650-36365697297306-878378598888898625--3260---000798789982
Q gi|254780771|r 260 HIGCGCIIVSQVGIA-GSTYIGDNVLIGGQ-CGIAGYLKIGDNVQIASK--SGVL---KDIPAGQQYGGM 322 (347)
Q Consensus 260 ~iG~~~~~~~~~~~~-g~~~ig~~~~ig~~-~~i~~~v~ig~~~~i~a~--s~v~---~~v~~~~~~~G~ 322 (347)
+||+++++.+..|.. |+-.+||+..|=.| +.-...+.-=+.+-|+-| .++. +-|.|..+|.|+
T Consensus 374 KIG~GTL~Vng~G~N~G~LkVGDGtVIL~qqad~~g~~qAFs~V~I~SGR~TV~Lnd~~Qv~pdnIyfGf 443 (759)
T pfam02395 374 KIGEGTLTVNGTGVNNGGLKVGDGTVILNQQADADGKVQAFSSVGIASGRGTVVLNDENQVNPDNIYFGF 443 (759)
T ss_pred EEECCEEEEEEECCCCCCEEECCEEEEEECCCCCCCCEEECCEEEEECCCCEEEECHHHCCCCCCCEEEE
T ss_conf 2204269997214565887867778998456686655020215558647416997803056987635730
No 170
>pfam04552 Sigma54_DBD Sigma-54, DNA binding domain. This DNA binding domain is based on peptide fragmentation data. This domain is proximal to DNA in the promoter/holoenzyme complex. Furthermore this region contains a putative helix-turn-helix motif. At the C-terminus, there is a highly conserved region known as the RpoN box and is the signature of the sigma-54 proteins.
Probab=26.25 E-value=31 Score=14.70 Aligned_cols=21 Identities=19% Similarity=0.452 Sum_probs=16.7
Q ss_pred CCCCCC----CCCCCHHHHHHHHCC
Q ss_conf 744467----788039999998466
Q gi|254780771|r 4 LNFFVS----HKGIALMKLAQSIGA 24 (347)
Q Consensus 4 ~~Ff~~----~~~~sl~eIa~~l~~ 24 (347)
.+||.. .+|++++++|+.++.
T Consensus 37 ~~Ff~~g~~~l~PLtlk~iA~~l~l 61 (160)
T pfam04552 37 EDFLEKGPEALRPLTLREVAEALGM 61 (160)
T ss_pred HHHHHCCCCCCCCCCHHHHHHHCCC
T ss_conf 9998478535757619999988099
No 171
>TIGR02874 spore_ytfJ sporulation protein YtfJ; InterPro: IPR014229 Proteins in this entry, exemplified by YtfJ of Bacillus subtilis, are encoded by bacterial genomes if, and only if, the species is capable of endospore formation. YtfJ was confirmed in spores of B. subtilis; it appears to be expressed in the forespore under control of SigF ..
Probab=23.64 E-value=40 Score=14.07 Aligned_cols=30 Identities=30% Similarity=0.589 Sum_probs=16.9
Q ss_pred EEEEEECCCCCEEEEC---CCCCCCCCCCCCCC
Q ss_conf 0244201000002321---34454335566653
Q gi|254780771|r 181 SSLIGNSVILHSGVRI---GNDGFGYARGVSDI 210 (347)
Q Consensus 181 ~~iIG~~~~I~~~~vI---G~~GFgf~~~~~~~ 210 (347)
|++|||-+.-.+|++| =.-+||||--.+.+
T Consensus 22 NTIvGd~v~tpDG~~IiPiSkV~FGFAaGGSEf 54 (132)
T TIGR02874 22 NTIVGDAVETPDGSVIIPISKVSFGFAAGGSEF 54 (132)
T ss_pred EEEECCCCCCCCCCEEEEEECCCCCCCCCCCCC
T ss_conf 004568664889847861112312203454345
No 172
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=23.14 E-value=38 Score=14.23 Aligned_cols=44 Identities=16% Similarity=0.323 Sum_probs=29.9
Q ss_pred CCCCCCCHHHHHHHHCCEEECCCCCCEEECC-CCCHHHCCCCCEEE
Q ss_conf 6778803999999846699557766338715-67988889986999
Q gi|254780771|r 8 VSHKGIALMKLAQSIGASLLDENFGERMIYS-LSPIARASTGDISY 52 (347)
Q Consensus 8 ~~~~~~sl~eIa~~l~~~l~g~~~~d~~I~~-I~~l~~A~~~~IsF 52 (347)
+..+++|++||...+...+..+ ....-|.+ |+.+....+|++-|
T Consensus 1 ~~~~~lsVsel~~~ik~~le~~-~~~v~V~GEIS~~~~~~sGH~YF 45 (443)
T PRK00286 1 MMDNPLSVSELNGYVKSLLERD-LGQVWVRGEISNFTRPSSGHWYF 45 (443)
T ss_pred CCCCCEEHHHHHHHHHHHHHHH-CCCEEEEEEECCCEECCCCEEEE
T ss_conf 9998630999999999999834-89899999964666289964999
No 173
>TIGR02395 rpoN_sigma RNA polymerase sigma-54 factor; InterPro: IPR000394 Sigma factors are bacterial transcription initiation factors that promote the attachment of the core RNA polymerase to specific initiation sites and are then released. They alter the specificity of promoter recognition. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma- 70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes: the sigma-54 and sigma-70 families. The sigma-70 family has many different sigma factors (see the relevant entry IPR000943 from INTERPRO). The sigma-54 family consists exclusively of sigma-54 factor , required for the transcription of promoters that have a characteristic -24 and -12 consensus recognition element but which are devoid of the typical -10, -35 sequences recognized by the major sigma factors. The sigma-54 factor is also characterised by its interaction with ATP-dependent positive regulatory proteins that bind to upstream activating sequences. Structurally sigma-54 factors consist of three distinct regions: A relatively well conserved N-terminal glutamine-rich region of about 50 residues that contains a potential leucine zipper motif. A region of variable length which is not well conserved. A well conserved C-terminal region of about 350 residues that contains a second potential leucine zipper, a potential DNA-binding 'helix-turn-helix' motif and a perfectly conserved octapeptide whose function is not known. ; GO: 0003677 DNA binding, 0003700 transcription factor activity, 0003899 DNA-directed RNA polymerase activity, 0016987 sigma factor activity, 0006352 transcription initiation, 0006355 regulation of transcription DNA-dependent.
Probab=21.21 E-value=50 Score=13.59 Aligned_cols=14 Identities=29% Similarity=0.527 Sum_probs=6.6
Q ss_pred CCCCCHHHHHHHHC
Q ss_conf 78803999999846
Q gi|254780771|r 10 HKGIALMKLAQSIG 23 (347)
Q Consensus 10 ~~~~sl~eIa~~l~ 23 (347)
.+||+|+|+|+.|+
T Consensus 363 LkPL~L~~vA~el~ 376 (477)
T TIGR02395 363 LKPLTLREVAEELG 376 (477)
T ss_pred CCCCCHHHHHHHHC
T ss_conf 68863899998858
Done!