RPSBLAST alignment for GI: 254780771 and conserved domain: TIGR01853

>gnl|CDD|162561 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate). Length = 324
 Score =  331 bits (850), Expect = 2e-91
 Identities = 153/324 (47%), Positives = 196/324 (60%), Gaps = 11/324 (3%)

Query: 18  LAQSIGASLLDENFGERMIYSLSPIARASTGDISYIISRKFLNNIEKCKASAIICSQDIV 77
           LA+ +GA L     G+ +I  ++P+ +A    I+++ + K+L +++  +A A+I S D  
Sbjct: 2   LAERLGAELKGN--GDIVITGVAPLEKAKANHITFLANPKYLKHLKSSQAGAVIVSPDDQ 59

Query: 78  PFIPKNIPCLLSDKPEVSFAIAGSILYPQAMHMEASSFEGGISPQAFLGEDVKIEDGVVI 137
             +P     L+   P ++FA    +  P          E GI P A +    KI DGV I
Sbjct: 60  -GLPAKCAALVVKDPYLAFAKVAELFDPPPKR------EAGIHPTAVVDPSAKIGDGVTI 112

Query: 138 APMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYS-SLIGNSVILHSGVRI 196
            P  V+  GVEIG    +GPG VIG  V IG    I     IY    +G +VI+HSG  I
Sbjct: 113 GPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVI 172

Query: 197 GNDGFGYARGVSDIH-KIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQI 255
           G+DGFGYA   +  H KI  IGRVII+D VEIGAN+ IDRG  DDTIIGE TKIDN VQI
Sbjct: 173 GSDGFGYAHTANGGHVKIPQIGRVIIEDDVEIGANTTIDRGAFDDTIIGEGTKIDNLVQI 232

Query: 256 GHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPA 315
            HN  IG  CIIV+QVGIAGST IG NV+IGGQ G+AG+L+IGDNV I +KSGV K IP 
Sbjct: 233 AHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIGDNVTIGAKSGVTKSIPP 292

Query: 316 GQQYGGMPARPIGEYLRHMVMLSK 339
              YGG+PARP  E+LR    + +
Sbjct: 293 PGVYGGIPARPNKEWLRIAAKVKR 316