RPSBLAST alignment for GI: 254780771 and conserved domain: TIGR01853
>gnl|CDD|162561 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate). Length = 324
Score = 331 bits (850), Expect = 2e-91
Identities = 153/324 (47%), Positives = 196/324 (60%), Gaps = 11/324 (3%)
Query: 18 LAQSIGASLLDENFGERMIYSLSPIARASTGDISYIISRKFLNNIEKCKASAIICSQDIV 77
LA+ +GA L G+ +I ++P+ +A I+++ + K+L +++ +A A+I S D
Sbjct: 2 LAERLGAELKGN--GDIVITGVAPLEKAKANHITFLANPKYLKHLKSSQAGAVIVSPDDQ 59
Query: 78 PFIPKNIPCLLSDKPEVSFAIAGSILYPQAMHMEASSFEGGISPQAFLGEDVKIEDGVVI 137
+P L+ P ++FA + P E GI P A + KI DGV I
Sbjct: 60 -GLPAKCAALVVKDPYLAFAKVAELFDPPPKR------EAGIHPTAVVDPSAKIGDGVTI 112
Query: 138 APMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYS-SLIGNSVILHSGVRI 196
P V+ GVEIG +GPG VIG V IG I IY +G +VI+HSG I
Sbjct: 113 GPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVI 172
Query: 197 GNDGFGYARGVSDIH-KIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQI 255
G+DGFGYA + H KI IGRVII+D VEIGAN+ IDRG DDTIIGE TKIDN VQI
Sbjct: 173 GSDGFGYAHTANGGHVKIPQIGRVIIEDDVEIGANTTIDRGAFDDTIIGEGTKIDNLVQI 232
Query: 256 GHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPA 315
HN IG CIIV+QVGIAGST IG NV+IGGQ G+AG+L+IGDNV I +KSGV K IP
Sbjct: 233 AHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIGDNVTIGAKSGVTKSIPP 292
Query: 316 GQQYGGMPARPIGEYLRHMVMLSK 339
YGG+PARP E+LR + +
Sbjct: 293 PGVYGGIPARPNKEWLRIAAKVKR 316