RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780771|ref|YP_003065184.1| UDP-3-O-[3-hydroxymyristoyl]
glucosamine N-acyltransferase [Candidatus Liberibacter asiaticus str.
psy62]
         (347 letters)



>gnl|CDD|31246 COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl].
          Length = 338

 Score =  302 bits (775), Expect = 1e-82
 Identities = 145/331 (43%), Positives = 191/331 (57%), Gaps = 9/331 (2%)

Query: 10  HKGIALMKLAQSIGASLLDENFGERMIYSLSPIARASTGDISYIISRKFLNNIEKCKASA 69
                L +LAQ +GA L  +  G+R+I  ++P+  A  GDIS++ + K+   ++  +A A
Sbjct: 1   MPSYTLAELAQQLGAELRGD--GDRVITGVAPLDEAQPGDISFLANPKYRKELKTSRAGA 58

Query: 70  IICSQDIVPFIPKNIPCLLSDKPEVSFAIAGSILYPQAMHMEASSFEGGISPQAFLGEDV 129
           +I S     F P     L+   P ++FA    + Y         +   GI P A +    
Sbjct: 59  VIVSAKDAAFAPAKKNALVVKDPYLAFAKVAQLFYR------PFNPAAGIHPTAVIDPTA 112

Query: 130 KIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYS-SLIGNSV 188
            I   V I P  V+  GV IG    +G G+VIG  V+IG    I    +IY   +IGN+V
Sbjct: 113 TIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNV 172

Query: 189 ILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTK 248
           I+HSG  IG DGFGYA       KI  IGRVII D VEIGAN+ IDRG +DDT+IGE  K
Sbjct: 173 IIHSGAVIGADGFGYAGTAIGWVKIPQIGRVIIGDDVEIGANTTIDRGALDDTVIGEGVK 232

Query: 249 IDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSG 308
           IDN VQIGHNV IG  CII  QVGIAGS  IG  V+IGGQ GIAG+L+IGD V I ++SG
Sbjct: 233 IDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVGIAGHLEIGDGVTIGARSG 292

Query: 309 VLKDIPAGQQYGGMPARPIGEYLRHMVMLSK 339
           V+  I      GG+PA+PI E+L+   ++ +
Sbjct: 293 VMASITEPGYSGGIPAQPIKEWLKTAALIRR 323


>gnl|CDD|100043 cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyltransferase
           (LpxD): The enzyme catalyzes the transfer of
           3-hydroxymyristic acid or 3-hydroxy-arachidic acid,
           depending on the organism, from the acyl carrier protein
           (ACP) to UDP-3-O-acyl-glucosamine to produce
           UDP-2,3-diacyl-GlcNAc. This constitutes the third step
           in the lipid A biosynthetic pathway in Gram-negative
           bacteria. LpxD is a homotrimer, with each subunit
           consisting of a novel combination of an N-terminal
           uridine-binding domain, a core lipid-binding left-handed
           parallel beta helix (LbH) domain, and a C-terminal
           alpha-helical extension. The LbH domain contains 9
           turns, each containing three imperfect tandem repeats of
           a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)..
          Length = 205

 Score =  274 bits (704), Expect = 2e-74
 Identities = 113/205 (55%), Positives = 137/205 (66%), Gaps = 1/205 (0%)

Query: 128 DVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYS-SLIGN 186
             KI + V I P AV+  GV IG    +GPG VIG GV IG +C I    +IY   +IG+
Sbjct: 1   SAKIGENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGD 60

Query: 187 SVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGEN 246
            VI+HSG  IG+DGFG+A       KI  +G VII D VEIGAN+ IDRG + DT+IG+ 
Sbjct: 61  RVIIHSGAVIGSDGFGFAPDGGGWVKIPQLGGVIIGDDVEIGANTTIDRGALGDTVIGDG 120

Query: 247 TKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASK 306
           TKIDN VQI HNV IG  C+I +QVGIAGST IGDNV+IGGQ GIAG+L IGD V I + 
Sbjct: 121 TKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIGGQVGIAGHLTIGDGVVIGAG 180

Query: 307 SGVLKDIPAGQQYGGMPARPIGEYL 331
           SGV   +P G+   G PA+P  E+L
Sbjct: 181 SGVTSIVPPGEYVSGTPAQPHREWL 205


>gnl|CDD|100042 cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamine
           O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins
           in this family catalyze the transfer of
           (R)-3-hydroxymyristic acid from its acyl carrier protein
           thioester to UDP-GlcNAc. It is the first enzyme in the
           lipid A biosynthetic pathway and is also referred to as
           LpxA. Lipid A is essential for the growth of Escherichia
           coli and related bacteria. It is also essential for
           maintaining the integrity of the outer membrane.
           UDP-GlcNAc acyltransferase is a homotrimer of
           left-handed parallel beta helix (LbH) subunits. Each
           subunit contains an N-terminal LbH region with 9 turns,
           each containing three imperfect tandem repeats of a
           hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X),
           and a C-terminal alpha-helical region..
          Length = 254

 Score =  107 bits (270), Expect = 5e-24
 Identities = 60/198 (30%), Positives = 84/198 (42%), Gaps = 15/198 (7%)

Query: 137 IAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYS-SLIGNSVILHSGVR 195
           I P A+V PG +IG    +GP  VIG  V IG    IG+   I   + IG +  +     
Sbjct: 2   IHPTAIVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFAS 61

Query: 196 IGND--GFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDD---TIIGENTKID 250
           IG       Y    +         R+ I D   I     I RGT      T IG N  + 
Sbjct: 62  IGEAPQDLKYKGEPT---------RLEIGDNNTIREFVTIHRGTAQGGGVTRIGNNNLLM 112

Query: 251 NQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVL 310
             V + H+  IG   I+ +   +AG   IGD  +IGG   +  + +IG +  +   SGV+
Sbjct: 113 AYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGGSGVV 172

Query: 311 KDIPAGQQYGGMPARPIG 328
           +D+P      G  AR  G
Sbjct: 173 QDVPPYVIAAGNRARLRG 190



 Score = 28.9 bits (66), Expect = 1.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)

Query: 125 LGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVI 161
           L   V+I D  +I  ++ V+    IGR   VG GS +
Sbjct: 135 LAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGGSGV 171


>gnl|CDD|31245 COG1043, LpxA, Acyl-[acyl carrier protein].
          Length = 260

 Score = 96.8 bits (241), Expect = 9e-21
 Identities = 58/196 (29%), Positives = 86/196 (43%), Gaps = 11/196 (5%)

Query: 137 IAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYS-SLIGNSVILHSGVR 195
           I P A++ PG EIG    +GP  +IG  V IG    + +   +   + IG +  +     
Sbjct: 6   IHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFAS 65

Query: 196 IGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDD---TIIGENTKIDNQ 252
           IG D         D+       R+II D   I     I RGT+     T IG+N  I   
Sbjct: 66  IGEDP-------QDLKYKGEPTRLIIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAY 118

Query: 253 VQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKD 312
             + H+  IG  CI+ +   +AG   +GD  +IGG   +  +++IG +  I   S V +D
Sbjct: 119 AHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLSAVHQFVRIGAHAMIGGLSAVSQD 178

Query: 313 IPAGQQYGGMPARPIG 328
           +P      G  AR  G
Sbjct: 179 VPPYVIASGNHARLRG 194



 Score = 35.5 bits (82), Expect = 0.021
 Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 8/108 (7%)

Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSS 178
           I   A +  D  I +  ++A  A +   VE+G    +G  S +   VRIG +  IG  S+
Sbjct: 115 IMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLSAVHQFVRIGAHAMIGGLSA 174

Query: 179 I------YSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVI 220
           +      Y    GN   L     +G    G++R   +IH +    +++
Sbjct: 175 VSQDVPPYVIASGNHARLRGLNIVGLKRRGFSR--EEIHALRKAYKLL 220


>gnl|CDD|31400 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase
           (contains nucleotidyltransferase and I-patch
           acetyltransferase domains) [Cell envelope biogenesis,
           outer membrane].
          Length = 460

 Score = 94.9 bits (236), Expect = 3e-20
 Identities = 57/192 (29%), Positives = 80/192 (41%), Gaps = 15/192 (7%)

Query: 127 EDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGN 186
               I   V I    V+ P V +   T +G   VIG G  I ++  IG  + I +  +  
Sbjct: 261 ATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVI-KDSVIGDNAVIKAYSVIE 319

Query: 187 SVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGEN 246
              +  G  +G   F   R  + +   VHIG  +   K  IG  S         T +G+ 
Sbjct: 320 GSTVGEGATVGP--FARLRPGAVLGADVHIGNFVEVKKATIGKGSKAGH----LTYLGD- 372

Query: 247 TKIDNQVQIGHNVHIGCGCIIVSQVGIAGS-TYIGDNVLIGGQCGIAGYLKIGDNVQIAS 305
                  +IG NV+IG G I  +  G     T IGDNV IG    +   + IGD   IA+
Sbjct: 373 ------AEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQLVAPVTIGDGATIAA 426

Query: 306 KSGVLKDIPAGQ 317
            S + KD+P G 
Sbjct: 427 GSTITKDVPEGA 438


>gnl|CDD|100044 cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosphate
           uridyltransferase (GlmU), C-terminal left-handed
           beta-helix (LbH) acetyltransferase domain: GlmU is also
           known as UDP-N-acetylglucosamine pyrophosphorylase. It
           is a bifunctional bacterial enzyme that catalyzes two
           consecutive steps in the formation of
           UDP-N-acetylglucosamine (UDP-GlcNAc), an important
           precursor in bacterial cell wall formation. The two
           enzymatic activities, uridyltransferase and
           acetyltransferase, are carried out by two independent
           domains. The C-terminal LbH domain possesses the
           acetyltransferase activity. It catalyzes the
           CoA-dependent acetylation of GlcN-1-phosphate to
           GlcNAc-1-phosphate. The LbH domain contains 10 turns,
           each containing three imperfect tandem repeats of a
           hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The
           acetyltransferase active site is located at the
           interface between two subunits of the active LbH
           trimer..
          Length = 193

 Score = 86.7 bits (216), Expect = 9e-18
 Identities = 61/194 (31%), Positives = 90/194 (46%), Gaps = 29/194 (14%)

Query: 131 IEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVIL 190
           I+  V I    V+ PGV +  KT +G   VIG    I ++ +IG G  I +S +    ++
Sbjct: 12  IDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVI-KDSTIGDGVVIKASSVIEGAVI 70

Query: 191 HSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKI- 249
            +G  +G   F + R  + + + VHIG     + VE           I  + IGE +K  
Sbjct: 71  GNGATVGP--FAHLRPGTVLGEGVHIG-----NFVE-----------IKKSTIGEGSKAN 112

Query: 250 ------DNQVQIGHNVHIGCGCIIVSQVGIAGS-TYIGDNVLIGGQCGIAGYLKIGDNVQ 302
                 D   +IG  V+IG G I  +  G+    T IGDNV IG    +   + IGD   
Sbjct: 113 HLSYLGD--AEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAPVTIGDGAT 170

Query: 303 IASKSGVLKDIPAG 316
           IA+ S + KD+P G
Sbjct: 171 IAAGSTITKDVPPG 184



 Score = 40.1 bits (95), Expect = 9e-04
 Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 10/94 (10%)

Query: 218 RVIIQDKVEIGANSAIDRGTI--DDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAG 275
              I   VEIG +  ID G I    T+IGE+  I     I  +  IG G +I +   I G
Sbjct: 9   TTYIDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIK-DSTIGDGVVIKASSVIEG 67

Query: 276 STYIGDNVLIG------GQCGIAGYLKIGDNVQI 303
           +  IG+   +G          +   + IG+ V+I
Sbjct: 68  AV-IGNGATVGPFAHLRPGTVLGEGVHIGNFVEI 100



 Score = 37.8 bits (89), Expect = 0.005
 Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 7/63 (11%)

Query: 245 ENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIA 304
           E T ID  V+IG +V I  G I      + G T IG++ +IG  C I     IGD V I 
Sbjct: 8   ETTYIDGDVEIGVDVVIDPGVI------LEGKTVIGEDCVIGPNCVIKD-STIGDGVVIK 60

Query: 305 SKS 307
           + S
Sbjct: 61  ASS 63


>gnl|CDD|146990 pfam04613, LpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine
           N-acyltransferase, LpxD.  UDP-3-O-[3-hydroxymyristoyl]
           glucosamine N-acyltransferase (EC 2.3.1.-) catalyses an
           early step in lipid A biosynthesis:
           UDP-3-O-(3-hydroxytetradecanoyl)glucosamine +
           (R)-3-hydroxytetradecanoyl- [acyl carrier protein] ->
           UDP-2,3-bis(3-hydroxytetradecanoyl)glucosamine + [acyl
           carrier protein]. Members of this family also contain a
           hexapeptide repeat (pfam00132). This family constitutes
           the non-repeating region of LPXD proteins.
          Length = 72

 Score = 83.0 bits (206), Expect = 1e-16
 Identities = 23/72 (31%), Positives = 41/72 (56%)

Query: 32  GERMIYSLSPIARASTGDISYIISRKFLNNIEKCKASAIICSQDIVPFIPKNIPCLLSDK 91
           G+R I  ++P+  A  GDIS++ + K+L  ++  KASA+I + D    +P+ I  L+   
Sbjct: 1   GDREISGIAPLEEAGPGDISFLANPKYLKQLKTTKASAVIVTPDFADLVPEGIALLVVKN 60

Query: 92  PEVSFAIAGSIL 103
           P ++FA    + 
Sbjct: 61  PYLAFAKLLQLF 72


>gnl|CDD|31401 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase
           involved in lipopolysaccharide biosynthesis/translation
           initiation factor 2B, gamma/epsilon subunits
           (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis,
           outer membrane / Translation, ribosomal structure and
           biogenesis].
          Length = 358

 Score = 70.0 bits (171), Expect = 9e-13
 Identities = 42/139 (30%), Positives = 61/139 (43%), Gaps = 25/139 (17%)

Query: 130 KIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVI 189
            IE+ VVI   A +   V IG    +GPG++IG    IG   +IG G  I +S+I +   
Sbjct: 245 PIEEPVVIIRSAYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMD--- 301

Query: 190 LHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKI 249
               V IG+                +IG  II +  +IGA+       I D +IG N++I
Sbjct: 302 ---NVVIGH--------------GSYIGDSIIGENCKIGAS-----LIIGDVVIGINSEI 339

Query: 250 DNQVQIGHNVHIGCGCIIV 268
              V +G    +  G I  
Sbjct: 340 LPGVVVGPGSVVESGEIED 358



 Score = 38.0 bits (88), Expect = 0.003
 Identities = 27/93 (29%), Positives = 32/93 (34%), Gaps = 1/93 (1%)

Query: 221 IQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIG 280
            +D +E         G      I E   I     I   V IG G  I     I   T IG
Sbjct: 224 PEDLLEANELLLRGDGKSPLGPIEEPVVIIRSAYIIGPVVIGPGAKIGPGALIGPYTVIG 283

Query: 281 DNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDI 313
           + V IG    I   + I DNV I   S +   I
Sbjct: 284 EGVTIGNGVEIKNSI-IMDNVVIGHGSYIGDSI 315


>gnl|CDD|100050 cd03360, LbH_AT_putative, Putative Acyltransferase (AT),
           Left-handed parallel beta-Helix (LbH) domain; This group
           is composed of mostly uncharacterized proteins
           containing an N-terminal helical subdomain followed by a
           LbH domain. The alignment contains 6 turns, each
           containing three imperfect tandem repeats of a
           hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
           Proteins containing hexapeptide repeats are often
           enzymes showing acyltransferase activity. A few members
           are identified as NeuD, a sialic acid (Sia)
           O-acetyltransferase that is required for Sia synthesis
           and surface polysaccharide sialylation..
          Length = 197

 Score = 66.7 bits (164), Expect = 8e-12
 Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 3/113 (2%)

Query: 213 IVHIGRVIIQDKVEIGANSAIDRGTI--DDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQ 270
           ++H    ++     IG    I  G +   D  IG+N  I+    IGH+  IG    I   
Sbjct: 86  LIH-PSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPG 144

Query: 271 VGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMP 323
           V ++G   IG+   IG    I   + IG    I + + V KD+P G    G P
Sbjct: 145 VVLSGGVTIGEGAFIGAGATIIQGVTIGAGAIIGAGAVVTKDVPDGSVVVGNP 197



 Score = 62.9 bits (154), Expect = 1e-10
 Identities = 42/147 (28%), Positives = 56/147 (38%), Gaps = 37/147 (25%)

Query: 135 VVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSI-YSSLIGNSVILHSG 193
            +I P AVV P   IG    +  G+VI    RIG N  I  G+ I +  +IG+ V +  G
Sbjct: 85  TLIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPG 144

Query: 194 VRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQV 253
           V +                    G V I +   IGA +         TII         V
Sbjct: 145 VVLS-------------------GGVTIGEGAFIGAGA---------TII-------QGV 169

Query: 254 QIGHNVHIGCGCIIVSQVGIAGSTYIG 280
            IG    IG G ++   V   GS  +G
Sbjct: 170 TIGAGAIIGAGAVVTKDVP-DGSVVVG 195



 Score = 58.7 bits (143), Expect = 2e-09
 Identities = 28/70 (40%), Positives = 37/70 (52%)

Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSS 178
           I+  A +G D  I D V IAP  V+  GV IG   ++G G+ I  GV IG    IGAG+ 
Sbjct: 123 INTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQGVTIGAGAIIGAGAV 182

Query: 179 IYSSLIGNSV 188
           +   +   SV
Sbjct: 183 VTKDVPDGSV 192


>gnl|CDD|31247 COG1045, CysE, Serine acetyltransferase [Amino acid transport and
           metabolism].
          Length = 194

 Score = 62.2 bits (151), Expect = 2e-10
 Identities = 41/121 (33%), Positives = 57/121 (47%), Gaps = 14/121 (11%)

Query: 215 HIGRVIIQDKVEIGANSAIDRGTIDD----TIIGENTKIDNQVQIGHNVHIGCGCIIVSQ 270
            + R +    +EI   + I RG   D     +IGE   I + V I H V +G        
Sbjct: 60  SLSRFLFG--IEIHPGAKIGRGLFIDHGTGVVIGETAVIGDDVTIYHGVTLG------GT 111

Query: 271 VGIAGSTY--IGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPIG 328
              +G  +  IG+ V IG    I G ++IGDN +I + S VLKD+P      G+PAR IG
Sbjct: 112 GKESGKRHPTIGNGVYIGAGAKILGNIEIGDNAKIGAGSVVLKDVPPNATVVGVPARVIG 171

Query: 329 E 329
            
Sbjct: 172 R 172



 Score = 37.6 bits (87), Expect = 0.005
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 30/102 (29%)

Query: 143 VYPGVEIGRKTYV--GPGSVIGAGVRIGRNCSIGAGSSIYSS---------LIGNSVILH 191
           ++PG +IGR  ++  G G VIG    IG + +I  G ++  +          IGN V + 
Sbjct: 70  IHPGAKIGRGLFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIG 129

Query: 192 SGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAI 233
           +G +I                   +G + I D  +IGA S +
Sbjct: 130 AGAKI-------------------LGNIEIGDNAKIGAGSVV 152



 Score = 36.0 bits (83), Expect = 0.015
 Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 20/85 (23%)

Query: 126 GEDVKIEDGVVIAPMAVVYPGVEIG--------RKTYVGPGSVIGAG------VRIGRNC 171
           GE   I D V I      Y GV +G        R   +G G  IGAG      + IG N 
Sbjct: 91  GETAVIGDDVTI------YHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNIEIGDNA 144

Query: 172 SIGAGSSIYSSLIGNSVILHSGVRI 196
            IGAGS +   +  N+ ++    R+
Sbjct: 145 KIGAGSVVLKDVPPNATVVGVPARV 169


>gnl|CDD|39947 KOG4750, KOG4750, KOG4750, Serine O-acetyltransferase [Amino acid
           transport and metabolism].
          Length = 269

 Score = 59.3 bits (143), Expect = 1e-09
 Identities = 40/110 (36%), Positives = 51/110 (46%), Gaps = 6/110 (5%)

Query: 219 VIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTY 278
           V I    +IG    +D  T    +IGE   + + V I H V +G         G      
Sbjct: 149 VDIHPAAKIGKGILLDHAT--GVVIGETAVVGDNVSILHPVTLGG---TGKGSG-DRHPK 202

Query: 279 IGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPIG 328
           IGDNVLIG    I G + IG+   IA+ S VLKD+P      G PA+ IG
Sbjct: 203 IGDNVLIGAGVTILGNVTIGEGAVIAAGSVVLKDVPPNTLAVGNPAKLIG 252



 Score = 31.2 bits (70), Expect = 0.45
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 130 KIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVI 161
           KI D V+I     +   V IG    +  GSV+
Sbjct: 202 KIGDNVLIGAGVTILGNVTIGEGAVIAAGSVV 233



 Score = 30.0 bits (67), Expect = 1.1
 Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 22/109 (20%)

Query: 110 MEASSFEGGISPQAFLGEDVKIED--GVVIAPMAVVYPGV-------------------- 147
             + +F   I P A +G+ + ++   GVVI   AVV   V                    
Sbjct: 142 RISPNFGVDIHPAAKIGKGILLDHATGVVIGETAVVGDNVSILHPVTLGGTGKGSGDRHP 201

Query: 148 EIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRI 196
           +IG    +G G  I   V IG    I AGS +   +  N++ + +  ++
Sbjct: 202 KIGDNVLIGAGVTILGNVTIGEGAVIAAGSVVLKDVPPNTLAVGNPAKL 250


>gnl|CDD|100053 cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This
           family is composed of maltose O-acetyltransferase,
           galactoside O-acetyltransferase (GAT), xenobiotic
           acyltransferase (XAT) and similar proteins. MAT and GAT
           catalyze the CoA-dependent acetylation of the 6-hydroxyl
           group of their respective sugar substrates. MAT
           acetylates maltose and glucose exclusively while GAT
           specifically acetylates galactopyranosides. XAT
           catalyzes the CoA-dependent acetylation of a variety of
           hydroxyl-bearing acceptors such as chloramphenicol and
           streptogramin, among others. XATs are implicated in
           inactivating xenobiotics leading to xenobiotic
           resistance in patients. Members of this family contain a
           a left-handed parallel beta-helix (LbH) domain with at
           least 5 turns, each containing three imperfect tandem
           repeats of a hexapeptide repeat motif
           (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their
           active form..
          Length = 109

 Score = 59.0 bits (144), Expect = 2e-09
 Identities = 31/104 (29%), Positives = 40/104 (38%), Gaps = 15/104 (14%)

Query: 239 DDTIIGENTKID--NQVQIGHNVHIGCGCIIVS-------------QVGIAGSTYIGDNV 283
           D+  IG    I     + IG NV IG    I               Q   +    IGD+V
Sbjct: 6   DNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDV 65

Query: 284 LIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPI 327
            IG    I   + IGD   + + S V KD+P      G PA+ I
Sbjct: 66  WIGANVVILPGVTIGDGAVVGAGSVVTKDVPPNSIVAGNPAKVI 109



 Score = 48.2 bits (116), Expect = 3e-06
 Identities = 30/106 (28%), Positives = 39/106 (36%), Gaps = 23/106 (21%)

Query: 146 GVEIGRKTYVGPGSVIGA--GVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGY 203
            + IG   Y+GPG VI A  G+ IG N  IG   +IY                       
Sbjct: 1   NISIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDH-----------------NHDI 43

Query: 204 ARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKI 249
                 I + V    ++I D V IGAN  I  G      IG+   +
Sbjct: 44  DDPERPIEQGVTSAPIVIGDDVWIGANVVILPG----VTIGDGAVV 85



 Score = 42.4 bits (101), Expect = 2e-04
 Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 19/71 (26%)

Query: 126 GEDVKIEDGVVIAPMAVVYPG-------------------VEIGRKTYVGPGSVIGAGVR 166
           G  + I D V+I P   +Y                     + IG   ++G   VI  GV 
Sbjct: 19  GGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPGVT 78

Query: 167 IGRNCSIGAGS 177
           IG    +GAGS
Sbjct: 79  IGDGAVVGAGS 89



 Score = 34.0 bits (79), Expect = 0.059
 Identities = 16/41 (39%), Positives = 19/41 (46%)

Query: 121 PQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVI 161
            Q      + I D V I    V+ PGV IG    VG GSV+
Sbjct: 51  EQGVTSAPIVIGDDVWIGANVVILPGVTIGDGAVVGAGSVV 91


>gnl|CDD|100051 cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This
           family is composed of gamma carbonic anhydrase (CA),
           Ferripyochelin Binding Protein (FBP), E. coli paaY
           protein, and similar proteins. CAs are zinc-containing
           enzymes that catalyze the reversible hydration of carbon
           dioxide in a two-step mechanism, involving the
           nucleophilic attack of a zinc-bound hydroxide ion on
           carbon dioxide, followed by the regeneration of the
           active site by ionization of the zinc-bound water
           molecule and removal of a proton from the active site.
           They are ubiquitous enzymes involved in fundamental
           processes like photosynthesis, respiration, pH
           homeostasis and ion transport. There are three
           evolutionary distinct groups - alpha, beta and gamma
           carbonic anhydrases - which show no significant sequence
           identity or structural similarity. Gamma CAs are
           trimeric enzymes with left-handed parallel beta helix
           (LbH) structural domain..
          Length = 153

 Score = 58.6 bits (143), Expect = 2e-09
 Identities = 52/186 (27%), Positives = 69/186 (37%), Gaps = 58/186 (31%)

Query: 148 EIGRKTYVGPGS-VIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARG 206
           EI    ++ P + VIG  V +G   S+  G+ +                         RG
Sbjct: 1   EIDPSAFIAPNATVIGD-VTLGEGSSVWFGAVL-------------------------RG 34

Query: 207 VSDIHKIVHIG-RVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGC 265
             D++ I  IG R  IQD       S +       TIIG+N      V +GH   +  GC
Sbjct: 35  --DVNPI-RIGERTNIQD------GSVLHVDPGYPTIIGDN------VTVGHGAVLH-GC 78

Query: 266 IIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVL--KDIPAGQQYGGMP 323
            I            GDN LIG    I     IG    +A+ S V   K IP G    G P
Sbjct: 79  TI------------GDNCLIGMGAIILDGAVIGKGSIVAAGSLVPPGKVIPPGSLVAGSP 126

Query: 324 ARPIGE 329
           A+ + E
Sbjct: 127 AKVVRE 132



 Score = 48.9 bits (118), Expect = 2e-06
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 15/97 (15%)

Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVV---YPGVEIGRKTYVGPGSVI----GAGVRIGRNC 171
           I+P A +  DV + +G  +   AV+      + IG +T +  GSV+    G    IG N 
Sbjct: 8   IAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNV 67

Query: 172 SIGAGSSIYS------SLIG-NSVILHSGVRIGNDGF 201
           ++G G+ ++        LIG  ++IL  G  IG    
Sbjct: 68  TVGHGAVLHGCTIGDNCLIGMGAIIL-DGAVIGKGSI 103



 Score = 46.6 bits (112), Expect = 9e-06
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 126 GEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGS 177
           G    I D V +   AV++ G  IG    +G G++I  G  IG+   + AGS
Sbjct: 58  GYPTIIGDNVTVGHGAVLH-GCTIGDNCLIGMGAIILDGAVIGKGSIVAAGS 108



 Score = 33.5 bits (78), Expect = 0.093
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 130 KIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRI 167
            I D  +I   A++  G  IG+ + V  GS++  G  I
Sbjct: 79  TIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPPGKVI 116



 Score = 26.6 bits (60), Expect = 9.5
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVG--PGSVI 161
           I   A + +   I  G ++A  ++V PG  I   + V   P  V+
Sbjct: 86  IGMGAIILDGAVIGKGSIVAAGSLVPPGKVIPPGSLVAGSPAKVV 130


>gnl|CDD|100048 cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed parallel
           beta-Helix (LbH) N-terminal domain: This group is
           composed of Xanthomonas campestris WcxM and proteins
           with similarity to the WcxM N-terminal domain. WcxM is
           thought to be bifunctional, catalyzing both the
           isomerization and transacetylation reactions of
           keto-hexoses. It contains an N-terminal LbH domain
           responsible for the transacetylation function and a
           C-terminal isomerase domain. The LbH domain contains
           imperfect tandem repeats of a hexapeptide repeat motif
           (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with
           acyltransferase activity..
          Length = 119

 Score = 57.9 bits (141), Expect = 4e-09
 Identities = 33/123 (26%), Positives = 45/123 (36%), Gaps = 19/123 (15%)

Query: 221 IQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCII------------- 267
           I D   IG N  I+     D  IG+N KI + V I   V I     I             
Sbjct: 1   IGDNCIIGTNVFIEN----DVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPR 56

Query: 268 --VSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPAR 325
             + +      T +     IG    I   + IG+   + + + V KD+P      G PAR
Sbjct: 57  SKIYRKWELKGTTVKRGASIGANATILPGVTIGEYALVGAGAVVTKDVPPYALVVGNPAR 116

Query: 326 PIG 328
            IG
Sbjct: 117 IIG 119



 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 15/70 (21%)

Query: 123 AFLGEDVKIEDGVVIAPMAV---------------VYPGVEIGRKTYVGPGSVIGAGVRI 167
             + E V IED V I P  V                  G  + R   +G  + I  GV I
Sbjct: 29  VSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIYRKWELKGTTVKRGASIGANATILPGVTI 88

Query: 168 GRNCSIGAGS 177
           G    +GAG+
Sbjct: 89  GEYALVGAGA 98



 Score = 40.6 bits (96), Expect = 6e-04
 Identities = 29/98 (29%), Positives = 35/98 (35%), Gaps = 26/98 (26%)

Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIG---------------A 163
           I    F+  DVKI D V I     +Y GV I    ++GP  V                  
Sbjct: 7   IGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIYRKWELK 66

Query: 164 GVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGF 201
           G  + R  SIGA          N+ IL  GV IG    
Sbjct: 67  GTTVKRGASIGA----------NATIL-PGVTIGEYAL 93



 Score = 38.3 bits (90), Expect = 0.003
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 129 VKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVI 161
             ++ G  I   A + PGV IG    VG G+V+
Sbjct: 68  TTVKRGASIGANATILPGVTIGEYALVGAGAVV 100


>gnl|CDD|36674 KOG1461, KOG1461, KOG1461, Translation initiation factor 2B,
           epsilon subunit (eIF-2Bepsilon/GCD6) [Translation,
           ribosomal structure and biogenesis].
          Length = 673

 Score = 54.5 bits (131), Expect = 5e-08
 Identities = 34/93 (36%), Positives = 43/93 (46%), Gaps = 13/93 (13%)

Query: 211 HKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQ 270
             I     V++   V +GAN  I  GT     IG  +KI N V       IG  C I S 
Sbjct: 314 RNIYKSPDVVLSHSVIVGANVVIGAGTK----IGSGSKISNSV-------IGANCRIGSN 362

Query: 271 VGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQI 303
           V I  S +I +NV IG  C I  +  I D+V+I
Sbjct: 363 VRIKNS-FIWNNVTIGDNCRI-DHAIICDDVKI 393



 Score = 52.6 bits (126), Expect = 1e-07
 Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 5/114 (4%)

Query: 132 EDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILH 191
              VV++   +V   V IG  T +G GS I   V IG NC IG+   I +S I N+V + 
Sbjct: 319 SPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSV-IGANCRIGSNVRIKNSFIWNNVTIG 377

Query: 192 SGVRIGN----DGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDT 241
              RI +    D      G       V    V++     +  NS + + T +++
Sbjct: 378 DNCRIDHAIICDDVKIGEGAILKPGSVLGFGVVVGRNFVLPKNSKVRQPTTEES 431



 Score = 48.0 bits (114), Expect = 4e-06
 Identities = 39/119 (32%), Positives = 51/119 (42%), Gaps = 17/119 (14%)

Query: 151 RKTYVGPGSVIGAGVRIGRNCSIGAGSSI-YSSLIGNSVILHSGVRIGNDGFGYARGVSD 209
           R  Y  P  V+   V +G N  IGAG+ I   S I NSVI  +  RIG++          
Sbjct: 314 RNIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVI-GANCRIGSN---------- 362

Query: 210 IHKIVHIGRVIIQDKVEIGANSAIDRGTI-DDTIIGENTKIDNQVQIGHNVHIGCGCII 267
               V I    I + V IG N  ID   I DD  IGE   +     +G  V +G   ++
Sbjct: 363 ----VRIKNSFIWNNVTIGDNCRIDHAIICDDVKIGEGAILKPGSVLGFGVVVGRNFVL 417



 Score = 29.9 bits (67), Expect = 1.1
 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 11/59 (18%)

Query: 122 QAFLGEDVKIE-----------DGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGR 169
            +F+  +V I            D V I   A++ PG  +G    VG   V+    ++ +
Sbjct: 367 NSFIWNNVTIGDNCRIDHAIICDDVKIGEGAILKPGSVLGFGVVVGRNFVLPKNSKVRQ 425


>gnl|CDD|100045 cd03354, LbH_SAT, Serine acetyltransferase (SAT): SAT catalyzes the
           CoA-dependent acetylation of the side chain hydroxyl
           group of L-serine to form O-acetylserine, as the first
           step of a two-step biosynthetic pathway in bacteria and
           plants leading to the formation of L-cysteine. This
           reaction represents a key metabolic point of regulation
           for the cysteine biosynthetic pathway due to its
           feedback inhibition by cysteine. The enzyme is a 175 kDa
           homohexamer, composed of a dimer of homotrimers. Each
           subunit contains an N-terminal alpha helical region and
           a C-terminal left-handed beta-helix (LbH) subdomain with
           5 turns, each containing a hexapeptide repeat motif
           characteristic of the acyltransferase superfamily of
           enzymes. The trimer interface mainly involves the
           C-terminal LbH subdomain while the dimer (of trimers)
           interface is mediated by the N-terminal alpha helical
           subdomain..
          Length = 101

 Score = 54.4 bits (132), Expect = 5e-08
 Identities = 37/103 (35%), Positives = 49/103 (47%), Gaps = 6/103 (5%)

Query: 221 IQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIG 280
           I    +IG    ID GT    +IGE   I +   I   V +G       + G      IG
Sbjct: 5   IHPGAKIGPGLFIDHGT--GIVIGETAVIGDNCTIYQGVTLG----GKGKGGGKRHPTIG 58

Query: 281 DNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMP 323
           DNV+IG    I G + IGDNV+I + + V KD+PA     G+P
Sbjct: 59  DNVVIGAGAKILGNITIGDNVKIGANAVVTKDVPANSTVVGVP 101



 Score = 39.7 bits (94), Expect = 0.001
 Identities = 36/137 (26%), Positives = 52/137 (37%), Gaps = 41/137 (29%)

Query: 146 GVEIGRKTYVGPGSVI--GAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGY 203
           G++I     +GPG  I  G G+ IG    IG           ++  ++ GV +G  G G 
Sbjct: 2   GIDIHPGAKIGPGLFIDHGTGIVIGETAVIG-----------DNCTIYQGVTLGGKGKGG 50

Query: 204 ARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGC 263
            +               I D V IGA +          I+G        + IG NV IG 
Sbjct: 51  GKRH-----------PTIGDNVVIGAGA---------KILG-------NITIGDNVKIGA 83

Query: 264 GCIIVSQVGIAGSTYIG 280
             ++   V  A ST +G
Sbjct: 84  NAVVTKDVP-ANSTVVG 99



 Score = 37.8 bits (89), Expect = 0.004
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 2/74 (2%)

Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPG--VEIGRKTYVGPGSVIGAGVRIGRNCSIGAG 176
           I   A +G++  I  GV +             IG    +G G+ I   + IG N  IGA 
Sbjct: 25  IGETAVIGDNCTIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIGDNVKIGAN 84

Query: 177 SSIYSSLIGNSVIL 190
           + +   +  NS ++
Sbjct: 85  AVVTKDVPANSTVV 98


>gnl|CDD|100060 cd05636, LbH_G1P_TT_C_like, Putative glucose-1-phosphate
           thymidylyltransferase, C-terminal Left-handed parallel
           beta-Helix (LbH) domain: Proteins in this family show
           simlarity to glucose-1-phosphate adenylyltransferases in
           that they contain N-terminal catalytic domains that
           resemble a dinucleotide-binding Rossmann fold and
           C-terminal LbH fold domains. Members in this family are
           predicted to be glucose-1-phosphate
           thymidylyltransferases, which are involved in the
           dTDP-L-rhamnose biosynthetic pathway.
           Glucose-1-phosphate thymidylyltransferase catalyzes the
           synthesis of deoxy-thymidine di-phosphate
           (dTDP)-L-rhamnose, an important component of the cell
           wall of many microorganisms. The C-terminal LbH domain
           contains multiple turns, each containing three imperfect
           tandem repeats of a hexapeptide repeat motif
           (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing
           hexapeptide repeats are often enzymes showing
           acyltransferase activity..
          Length = 163

 Score = 53.0 bits (128), Expect = 1e-07
 Identities = 33/185 (17%), Positives = 68/185 (36%), Gaps = 32/185 (17%)

Query: 112 ASSFEGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNC 171
               EG +     +   V I +G ++   A +   V IG+   +GP + I     +G  C
Sbjct: 1   KDEIEGTVEEGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGC 60

Query: 172 SIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANS 231
            +G    + +S+I +      G ++ +    Y            +G  ++ + V +GA +
Sbjct: 61  VVGNSVEVKNSIIMD------GTKVPH--LNY------------VGDSVLGENVNLGAGT 100

Query: 232 AI-----DRGTIDDTIIGENTKIDNQVQ-----IGHNVHIGCGCIIVSQVGIAGSTYIGD 281
                  D   +   + GE  ++D   +     IG  V  G    +   V I   +++  
Sbjct: 101 ITANLRFDDKPVKVRLKGE--RVDTGRRKLGAIIGDGVKTGINVSLNPGVKIGPGSWVYP 158

Query: 282 NVLIG 286
             ++ 
Sbjct: 159 GCVVR 163



 Score = 36.0 bits (84), Expect = 0.017
 Identities = 19/51 (37%), Positives = 22/51 (43%)

Query: 253 VQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQI 303
           V I   V IG G I+ S   I G   IG    IG    I GY  +GD   +
Sbjct: 12  VTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVV 62



 Score = 31.8 bits (73), Expect = 0.31
 Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 11/84 (13%)

Query: 221 IQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIG 280
           +++ V I     I  G I    +     I+  V IG    IG    I       G T +G
Sbjct: 8   VEEGVTIKGPVWIGEGAI----VRSGAYIEGPVIIGKGCEIGPNAYI------RGYTVLG 57

Query: 281 DNVLIGGQCGIAGYLKIGDNVQIA 304
           D  ++G    +   + I D  ++ 
Sbjct: 58  DGCVVGNSVEVKNSI-IMDGTKVP 80


>gnl|CDD|30459 COG0110, WbbJ, Acetyltransferase (isoleucine patch superfamily)
           [General function prediction only].
          Length = 190

 Score = 52.6 bits (125), Expect = 2e-07
 Identities = 33/134 (24%), Positives = 49/134 (36%), Gaps = 9/134 (6%)

Query: 203 YARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIG 262
             +          +   + +  + IG    I        ++GE   I + V +G NV I 
Sbjct: 46  GIKIGEVAVIRPPVRIDLGEKNLTIGDLCFIGVNV--VILVGEGITIGDNVVVGPNVTIY 103

Query: 263 CGCIIVSQVG-------IAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPA 315
                   V         AG   IG++V IG    I   + IG+   I + S V KD+P 
Sbjct: 104 TNSHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVTKDVPP 163

Query: 316 GQQYGGMPARPIGE 329
                G PAR I +
Sbjct: 164 YGIVAGNPARVIRK 177



 Score = 39.9 bits (92), Expect = 0.001
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 19/103 (18%)

Query: 118 GISPQAFLGEDVKIEDGVVIAPMAVVYPG-------------------VEIGRKTYVGPG 158
           G++    +GE + I D VV+ P   +Y                     V IG   ++G G
Sbjct: 77  GVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAG 136

Query: 159 SVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGF 201
           +VI  GV IG    IGAGS +   +    ++  +  R+     
Sbjct: 137 AVILPGVTIGEGAVIGAGSVVTKDVPPYGIVAGNPARVIRKRD 179



 Score = 36.0 bits (82), Expect = 0.015
 Identities = 29/124 (23%), Positives = 46/124 (37%), Gaps = 5/124 (4%)

Query: 129 VKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIY---SSLIG 185
           VK+     I    V     E+          +    + IG  C IG    I       IG
Sbjct: 32  VKLGRYAEILGRLVGIKIGEVAVIRPPVRIDLGEKNLTIGDLCFIGVNVVILVGEGITIG 91

Query: 186 NSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTI--DDTII 243
           ++V++   V I  +        ++I  +V  G V I + V IGA + I  G    +  +I
Sbjct: 92  DNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILPGVTIGEGAVI 151

Query: 244 GENT 247
           G  +
Sbjct: 152 GAGS 155



 Score = 27.6 bits (60), Expect = 5.1
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 6/53 (11%)

Query: 109 HMEASSFEGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVI 161
            + A+      +    +GEDV I  G VI       PGV IG    +G GSV+
Sbjct: 111 FVTANIGALVGAGPVTIGEDVWIGAGAVIL------PGVTIGEGAVIGAGSVV 157


>gnl|CDD|100063 cd05825, LbH_wcaF_like, wcaF-like: This group is composed of the
           protein product of the E. coli wcaF gene and similar
           proteins. WcaF is part of the gene cluster responsible
           for the biosynthesis of the extracellular polysaccharide
           colanic acid. The wcaF protein is predicted to contain a
           left-handed parallel beta-helix (LbH) domain encoded by
           imperfect tandem repeats of a hexapeptide repeat motif
           (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing
           hexapeptide repeats are often enzymes showing
           acyltransferase activity. Many are trimeric in their
           active forms..
          Length = 107

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 31/120 (25%), Positives = 45/120 (37%), Gaps = 31/120 (25%)

Query: 224 KVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQ-----VG------ 272
            + IG NS I          GE   I N   +     IG    I SQ      G      
Sbjct: 3   NLTIGDNSWI----------GEGVWIYNLAPV----TIGSDACI-SQGAYLCTGSHDYRS 47

Query: 273 -----IAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPI 327
                I     IGD   +  +  +   + IG+   + ++S V++D+PA   Y G PA P+
Sbjct: 48  PAFPLITAPIVIGDGAWVAAEAFVGPGVTIGEGAVVGARSVVVRDLPAWTVYAGNPAVPV 107



 Score = 36.8 bits (86), Expect = 0.008
 Identities = 13/49 (26%), Positives = 22/49 (44%)

Query: 140 MAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSV 188
             ++   + IG   +V   + +G GV IG    +GA S +   L   +V
Sbjct: 50  FPLITAPIVIGDGAWVAAEAFVGPGVTIGEGAVVGARSVVVRDLPAWTV 98


>gnl|CDD|100047 cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and
           Galactoside O-acetyltransferase (GAT): MAT and GAT
           catalyze the CoA-dependent acetylation of the 6-hydroxyl
           group of their respective sugar substrates. MAT
           acetylates maltose and glucose exclusively at the C6
           position of the nonreducing end glucosyl moiety. GAT
           specifically acetylates galactopyranosides. Furthermore,
           MAT shows higher affinity toward artificial substrates
           containing an alkyl or hydrophobic chain as well as a
           glucosyl unit. Active MAT and GAT are homotrimers, with
           each subunit consisting of an N-terminal alpha-helical
           region and a C-terminal left-handed parallel alpha-helix
           (LbH) subdomain with 6 turns, each containing three
           imperfect tandem repeats of a hexapeptide repeat motif
           (X-[STAV]-X-[LIV]-[GAED]-X)..
          Length = 169

 Score = 48.6 bits (117), Expect = 2e-06
 Identities = 38/110 (34%), Positives = 42/110 (38%), Gaps = 26/110 (23%)

Query: 244 GENTKIDNQVQIGHN--------VHIGCGCIIVSQVGI-------------AGSTY---- 278
           G N  I +      N        V IG   +I   V I              G  Y    
Sbjct: 60  GYNIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTAGHPLDPEERNRGLEYAKPI 119

Query: 279 -IGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPI 327
            IGDNV IGG   I   + IGDN  I + S V KDIPA     G PAR I
Sbjct: 120 TIGDNVWIGGGVIILPGVTIGDNSVIGAGSVVTKDIPANVVAAGNPARVI 169



 Score = 38.2 bits (90), Expect = 0.004
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 147 VEIGRKTYVGPGSVIGAGVRIGRNCSIGAGS 177
           + IG   ++G G +I  GV IG N  IGAGS
Sbjct: 119 ITIGDNVWIGGGVIILPGVTIGDNSVIGAGS 149



 Score = 34.3 bits (80), Expect = 0.050
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 6/36 (16%)

Query: 129 VKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAG 164
           + I D V I    ++ PGV IG        SVIGAG
Sbjct: 119 ITIGDNVWIGGGVIILPGVTIGD------NSVIGAG 148


>gnl|CDD|34410 COG4801, COG4801, Predicted acyltransferase [General function
           prediction only].
          Length = 277

 Score = 48.4 bits (115), Expect = 3e-06
 Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 2/87 (2%)

Query: 218 RVIIQDKVEIGANSAIDRGTIDDTII-GENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGS 276
            ++++  V IG NS +  G + + II GE  +I   + +  ++ I   C +   V +   
Sbjct: 16  IIVVKGDVIIGKNSMLKYGVVGEEIIVGERVRIYGDI-VAKDIRIDMWCKVTGNVIVEND 74

Query: 277 TYIGDNVLIGGQCGIAGYLKIGDNVQI 303
            YIG+   I G+  + G L IG +V I
Sbjct: 75  AYIGEFSSIKGKLTVIGDLDIGADVII 101



 Score = 27.2 bits (60), Expect = 7.4
 Identities = 42/206 (20%), Positives = 76/206 (36%), Gaps = 23/206 (11%)

Query: 125 LGEDVKIEDGVVIAPMAV-----VYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSI 179
           +GE V+I   +V   + +     V   V +    Y+G  S I   + +  +  IGA   I
Sbjct: 42  VGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGKLTVIGDLDIGADVII 101

Query: 180 YSSLI-GNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTI 238
               +    +++ + V +    F Y   +  + +     +++ +     G    I    I
Sbjct: 102 EGGFVAKGWIVIRNPVPVLEFLFLYLSVLLRLGRAEEAEKLLEELFESDGGPLIIPADYI 161

Query: 239 ---------DDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQC 289
                    DD  +G   +++  V+ G     GCG          GS    +++L+G   
Sbjct: 162 VSDERIKVGDDAFVGTVCRLEGNVKAGVIS--GCGYY------GFGSIRGRNDILVGNNE 213

Query: 290 GIAGYLKIGDNVQIASKSGVLKDIPA 315
            I G +     V+  S   VL DI A
Sbjct: 214 PIHGPVANRGFVKTISNVEVLGDISA 239


>gnl|CDD|31007 COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine
           patch superfamily [General function prediction only].
          Length = 176

 Score = 47.5 bits (113), Expect = 5e-06
 Identities = 48/184 (26%), Positives = 65/184 (35%), Gaps = 56/184 (30%)

Query: 149 IGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVS 208
           I    +V P + +   VRIG   SI  G+ +                         RG  
Sbjct: 14  IDPTAFVAPSATVIGDVRIGAGVSIWPGAVL-------------------------RG-- 46

Query: 209 DIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHI-GCGCII 267
           D+  I    R  IQD V I A+            IG++      V IGH   + GC    
Sbjct: 47  DVEPIRIGARTNIQDGVVIHADPGYP------VTIGDD------VTIGHGAVVHGC---- 90

Query: 268 VSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVL--KDIPAGQQYGGMPAR 325
                      IGDNVLIG    +     IGD   + + + V   K+IP G    G PA+
Sbjct: 91  ----------TIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIPGGSLVVGSPAK 140

Query: 326 PIGE 329
            +  
Sbjct: 141 VVRP 144



 Score = 47.1 bits (112), Expect = 8e-06
 Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 28/135 (20%)

Query: 121 PQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGV---RIGRNCSIGAGS 177
             ++ G   KI+    +AP A V   V IG    + PG+V+   V   RIG   +I  G 
Sbjct: 4   IYSYEGLSPKIDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGV 63

Query: 178 SIYSS-----------LIGNSVILHSGVRIGND---GFGYARGVSDIHKIVHIGRVIIQD 223
            I++             IG+  ++H G  IG++   G G     + +     IG     D
Sbjct: 64  VIHADPGYPVTIGDDVTIGHGAVVH-GCTIGDNVLIGMG-----ATVLDGAVIG-----D 112

Query: 224 KVEIGANSAIDRGTI 238
              +GA + +  G  
Sbjct: 113 GSIVGAGALVTPGKE 127



 Score = 44.8 bits (106), Expect = 4e-05
 Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 1/73 (1%)

Query: 126 GEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIG 185
           G  V I D V I   AVV+ G  IG    +G G+ +  G  IG    +GAG+ +      
Sbjct: 70  GYPVTIGDDVTIGHGAVVH-GCTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEI 128

Query: 186 NSVILHSGVRIGN 198
               L  G     
Sbjct: 129 PGGSLVVGSPAKV 141



 Score = 44.0 bits (104), Expect = 7e-05
 Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 13/116 (11%)

Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVV---YPGVEIGRKTYVGPGSVI----GAGVRIGRNC 171
           ++P A +  DV+I  GV I P AV+      + IG +T +  G VI    G  V IG + 
Sbjct: 20  VAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDV 79

Query: 172 SIGAGSSIYS------SLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVII 221
           +IG G+ ++        LIG    +  G  IG+     A  +    K +  G +++
Sbjct: 80  TIGHGAVVHGCTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIPGGSLVV 135


>gnl|CDD|100039 cd00710, LbH_gamma_CA, Gamma carbonic anhydrases (CA): Carbonic
           anhydrases are zinc-containing enzymes that catalyze the
           reversible hydration of carbon dioxide in a two-step
           mechanism, involving the nucleophilic attack of a
           zinc-bound hydroxide ion on carbon dioxide, followed by
           the regeneration of the active site by ionization of the
           zinc-bound water molecule and removal of a proton from
           the active site. They are ubiquitous enzymes involved in
           fundamental processes like photosynthesis, respiration,
           pH homeostasis and ion transport. There are three
           distinct groups of  carbonic anhydrases - alpha, beta
           and gamma - which show no significant sequence identity
           or structural similarity. Gamma CAs are homotrimeric
           enzymes, with each subunit containing a left-handed
           parallel beta helix (LbH) structural domain..
          Length = 167

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 3/75 (4%)

Query: 124 FLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSL 183
            +G +V I+DGVVI   A+    V IG+   +  G+++     IG NC IG  S ++++ 
Sbjct: 44  IIGANVNIQDGVVI--HALEGYSVWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVFNAK 101

Query: 184 IG-NSVILHSGVRIG 197
           +G N VI H+ V  G
Sbjct: 102 VGDNCVIGHNAVVDG 116



 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 45/140 (32%), Positives = 63/140 (45%), Gaps = 22/140 (15%)

Query: 137 IAPMAVVYPGVEIGRKTYVGPGSVI----GAGVRIGRNCSIGAGSSIYSSLIGNSVILHS 192
           + P AVV   V IG   +VGPG+ I    G  + IG N +I  G  I++       +   
Sbjct: 11  VHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHA-------LEGY 63

Query: 193 GVRIGNDGFGYARGVSDIHK-IVHIGRVIIQDKVEIGANSAIDRGTI-DDTIIGENTKID 250
            V IG +       VS  H  IVH G   I D   IG  S +    + D+ +IG N  +D
Sbjct: 64  SVWIGKN-------VSIAHGAIVH-GPAYIGDNCFIGFRSVVFNAKVGDNCVIGHNAVVD 115

Query: 251 NQVQIGHNVHIGCGCIIVSQ 270
             V+I    ++  G +I SQ
Sbjct: 116 G-VEIPPGRYVPAGAVITSQ 134



 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 34/96 (35%), Positives = 43/96 (44%), Gaps = 14/96 (14%)

Query: 216 IGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAG 275
           IG VII D V +G  ++I R      II           IG NV+I  G +I +  G   
Sbjct: 18  IGDVIIGDNVFVGPGASI-RADEGTPII-----------IGANVNIQDGVVIHALEG--Y 63

Query: 276 STYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLK 311
           S +IG NV I     + G   IGDN  I  +S V  
Sbjct: 64  SVWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVFN 99


>gnl|CDD|32354 COG2171, DapD, Tetrahydrodipicolinate N-succinyltransferase [Amino
           acid transport and metabolism].
          Length = 271

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 36/144 (25%), Positives = 51/144 (35%), Gaps = 32/144 (22%)

Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSS 178
           I P A +     I  G V+ P + V  G   G  T V   + +G+  ++G+N  IG G+S
Sbjct: 111 IVPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGAS 170

Query: 179 IYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTI 238
           I   L                                   VII D   IGANS +  G  
Sbjct: 171 IGGVLEPLQA----------------------------NPVIIGDNCLIGANSEVVEG-- 200

Query: 239 DDTIIGENTKIDNQVQIGHNVHIG 262
              I+G+   +   V I  +  I 
Sbjct: 201 --VIVGDGCVVAAGVFITQDTKIY 222



 Score = 44.5 bits (105), Expect = 5e-05
 Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 10/105 (9%)

Query: 220 IIQDKVEIGANSAIDRGTIDD--TIIGENTKID------NQVQIGHNVHIGCGCII--VS 269
           I++    I   + +   +  +     GE T +D      +  Q+G N HIG G  I  V 
Sbjct: 116 IVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVL 175

Query: 270 QVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIP 314
           +   A    IGDN LIG    +   + +GD   +A+   + +D  
Sbjct: 176 EPLQANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFITQDTK 220



 Score = 36.4 bits (84), Expect = 0.013
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 8/82 (9%)

Query: 243 IGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLK------ 296
           I + T +  +  +      G G ++  +  +     +G N  IGG   I G L+      
Sbjct: 123 IAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANP 182

Query: 297 --IGDNVQIASKSGVLKDIPAG 316
             IGDN  I + S V++ +  G
Sbjct: 183 VIIGDNCLIGANSEVVEGVIVG 204



 Score = 29.5 bits (66), Expect = 1.4
 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 7/89 (7%)

Query: 116 EGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAG----VRIGRNC 171
           E  ++  A  GE   ++    +   A V     IG       G V+       V IG NC
Sbjct: 132 ESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGG--ASIGGVLEPLQANPVIIGDNC 189

Query: 172 SIGAGSSIYSSLI-GNSVILHSGVRIGND 199
            IGA S +   +I G+  ++ +GV I  D
Sbjct: 190 LIGANSEVVEGVIVGDGCVVAAGVFITQD 218


>gnl|CDD|100040 cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT): The XAT class
           of hexapeptide acyltransferases is composed of a large
           number of microbial enzymes that catalyze the
           CoA-dependent acetylation of a variety of
           hydroxyl-bearing acceptors such as chloramphenicol and
           streptogramin, among others. Members of this class of
           enzymes include Enterococcus faecium streptogramin A
           acetyltransferase and Pseudomonas aeruginosa
           chloramphenicol acetyltransferase. They contain repeated
           copies of a six-residue hexapeptide repeat sequence
           motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a
           left-handed parallel beta helix (LbH) structure. The
           active enzyme is a trimer with CoA and substrate binding
           sites at the interface of two separate LbH subunits.
           XATs are implicated in inactivating xenobiotics leading
           to xenobiotic resistance in patients..
          Length = 145

 Score = 44.8 bits (107), Expect = 3e-05
 Identities = 41/183 (22%), Positives = 56/183 (30%), Gaps = 62/183 (33%)

Query: 147 VEIGRKTYVGPG--SVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYA 204
           + +G  +Y       V G  + IG+ CSI  G                 V+IG  G    
Sbjct: 2   ISVGDYSYGSGPDCDVGGDKLSIGKFCSIAPG-----------------VKIGLGG---- 40

Query: 205 RGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCG 264
                 H    +                      D       +K D  V IG++V IG G
Sbjct: 41  -----NHPTDWV--------STYPFYIFGGEWEDDAKFDDWPSKGD--VIIGNDVWIGHG 85

Query: 265 CIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPA 324
             I+  V                         IGD   IA+ + V KD+P     GG PA
Sbjct: 86  ATILPGV------------------------TIGDGAVIAAGAVVTKDVPPYAIVGGNPA 121

Query: 325 RPI 327
           + I
Sbjct: 122 KVI 124



 Score = 32.5 bits (75), Expect = 0.19
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 6/37 (16%)

Query: 128 DVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAG 164
           DV I + V I   A + PGV IG       G+VI AG
Sbjct: 73  DVIIGNDVWIGHGATILPGVTIGD------GAVIAAG 103


>gnl|CDD|100061 cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit, central
           Left-handed parallel beta-Helix (LbH) domain: eIF-2B is
           a eukaryotic translation initiator, a guanine nucleotide
           exchange factor (GEF) composed of five different
           subunits (alpha, beta, gamma, delta and epsilon). eIF2B
           is important for regenerating GTP-bound eIF2 during the
           initiation process. This event is obligatory for eIF2 to
           bind initiator methionyl-tRNA, forming the ternary
           initiation complex. The eIF-2B epsilon subunit contains
           an N-terminal domain that resembles a
           dinucleotide-binding Rossmann fold, a central LbH domain
           containing 4 turns, each containing three imperfect
           tandem repeats of a hexapeptide repeat motif
           (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of
           unknown function that is present in eIF-4 gamma, eIF-5,
           and eIF-2B epsilon. The epsilon and gamma subunits form
           the catalytic subcomplex of eIF-2B, which binds eIF2 and
           catalyzes guanine nucleotide exchange..
          Length = 79

 Score = 44.9 bits (107), Expect = 4e-05
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 122 QAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGR 169
            +++ +DV IEDG  I   ++V  G  IG+   + PGS+I  GV IG 
Sbjct: 33  NSYIWDDVTIEDGCTIH-HSIVADGAVIGKGCTIPPGSLISFGVVIGD 79



 Score = 40.3 bits (95), Expect = 7e-04
 Identities = 28/97 (28%), Positives = 37/97 (38%), Gaps = 21/97 (21%)

Query: 167 IGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVE 226
           IGR  SIG G++I +S+IG         +IG +              V I    I D V 
Sbjct: 2   IGRGTSIGEGTTIKNSVIGR------NCKIGKN--------------VVIDNSYIWDDVT 41

Query: 227 IGANSAIDRGTI-DDTIIGENTKIDNQVQIGHNVHIG 262
           I     I    + D  +IG+   I     I   V IG
Sbjct: 42  IEDGCTIHHSIVADGAVIGKGCTIPPGSLISFGVVIG 78



 Score = 37.2 bits (87), Expect = 0.007
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 16/65 (24%)

Query: 149 IGRKTYVGPG-----SVIGAGVRIGRNCS-----------IGAGSSIYSSLIGNSVILHS 192
           IGR T +G G     SVIG   +IG+N             I  G +I+ S++ +  ++  
Sbjct: 2   IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIGK 61

Query: 193 GVRIG 197
           G  I 
Sbjct: 62  GCTIP 66


>gnl|CDD|100038 cd00208, LbetaH, Left-handed parallel beta-Helix (LbetaH or LbH)
           domain: The alignment contains 5 turns, each containing
           three imperfect tandem repeats of a hexapeptide repeat
           motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing
           hexapeptide repeats are often enzymes showing
           acyltransferase activity, however, some subfamilies in
           this hierarchy also show activities related to ion
           transport or translation initiation. Many are trimeric
           in their active forms..
          Length = 78

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 28/77 (36%), Positives = 33/77 (42%), Gaps = 8/77 (10%)

Query: 242 IIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTY--------IGDNVLIGGQCGIAG 293
            IGE  KI  +  I   V IG    I     I  +T         IGDNV IG    I G
Sbjct: 2   FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHG 61

Query: 294 YLKIGDNVQIASKSGVL 310
            +KIGDN  I + + V 
Sbjct: 62  GVKIGDNAVIGAGAVVT 78



 Score = 39.9 bits (94), Expect = 0.001
 Identities = 30/110 (27%), Positives = 39/110 (35%), Gaps = 32/110 (29%)

Query: 147 VEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARG 206
           V IG    + P +VI   V IG N +IG G+ I ++   N                    
Sbjct: 1   VFIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPN-------------------- 40

Query: 207 VSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIG 256
                        II D VEIGAN+ I  G      IG+N  I     + 
Sbjct: 41  --------EKNPTIIGDNVEIGANAVIHGG----VKIGDNAVIGAGAVVT 78



 Score = 37.6 bits (88), Expect = 0.006
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 119 ISPQAFLGEDVKIEDGVVI--APMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAG 176
           I     +G++V I  G VI  A          IG    +G  +VI  GV+IG N  IGAG
Sbjct: 15  IRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHGGVKIGDNAVIGAG 74

Query: 177 SSI 179
           + +
Sbjct: 75  AVV 77



 Score = 35.7 bits (83), Expect = 0.018
 Identities = 28/78 (35%), Positives = 35/78 (44%), Gaps = 13/78 (16%)

Query: 129 VKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGA--------GVRIGRNCSIGAGSSIY 180
           V I +GV I P AV+   V IG    +GPG+VIGA           IG N  IGA     
Sbjct: 1   VFIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGAN---- 56

Query: 181 SSLIGNSVILHSGVRIGN 198
            ++I   V +     IG 
Sbjct: 57  -AVIHGGVKIGDNAVIGA 73



 Score = 35.7 bits (83), Expect = 0.018
 Identities = 18/71 (25%), Positives = 23/71 (32%), Gaps = 8/71 (11%)

Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIG--------RKTYVGPGSVIGAGVRIGRN 170
           I     +     I   VVI     + PG  IG          T +G    IGA   I   
Sbjct: 3   IGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHGG 62

Query: 171 CSIGAGSSIYS 181
             IG  + I +
Sbjct: 63  VKIGDNAVIGA 73



 Score = 31.1 bits (71), Expect = 0.52
 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 8/66 (12%)

Query: 259 VHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLK--------IGDNVQIASKSGVL 310
           V IG G  I  +  I G   IGDNV IG    I             IGDNV+I + + + 
Sbjct: 1   VFIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIH 60

Query: 311 KDIPAG 316
             +  G
Sbjct: 61  GGVKIG 66



 Score = 29.5 bits (67), Expect = 1.2
 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 211 HKIVHIGRVIIQDKVEIGANSAIDRGTID----DTIIGENTKIDNQVQIGHNVHIGCGCI 266
            K V  G V+I D V IG  + I   T       TIIG+N +I     I   V IG   +
Sbjct: 11  PKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHGGVKIGDNAV 70

Query: 267 I 267
           I
Sbjct: 71  I 71



 Score = 28.0 bits (63), Expect = 4.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 128 DVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIG 162
              I D V I   AV++ GV+IG    +G G+V+ 
Sbjct: 44  PTIIGDNVEIGANAVIHGGVKIGDNAVIGAGAVVT 78


>gnl|CDD|100041 cd03350, LbH_THP_succinylT,
           2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP)
           N-succinyltransferase (also called THP
           succinyltransferase): THDP N-succinyltransferase
           catalyzes the conversion of tetrahydrodipicolinate and
           succinyl-CoA to N-succinyltetrahydrodipicolinate and
           CoA. It is the committed step in the succinylase pathway
           by which bacteria synthesize L-lysine and
           meso-diaminopimelate, a component of peptidoglycan. The
           enzyme is homotrimeric and each subunit contains an
           N-terminal region with alpha helices and hairpin loops,
           as well as a C-terminal region with a left-handed
           parallel alpha-helix (LbH) structural motif encoded by
           hexapeptide repeat motifs..
          Length = 139

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 28/120 (23%), Positives = 45/120 (37%), Gaps = 28/120 (23%)

Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSS 178
           + P A + +   I  G V+   + V  G  +   T V   + +G+  +IG+N  + AG+ 
Sbjct: 4   VPPGAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAV 63

Query: 179 IYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTI 238
           I   L                            + +    VII+D V IGAN  +  G I
Sbjct: 64  IGGVL----------------------------EPLQATPVIIEDDVFIGANCEVVEGVI 95



 Score = 38.9 bits (91), Expect = 0.002
 Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 10/95 (10%)

Query: 220 IIQDKVEIGANSAIDRGTIDD--TIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGS- 276
           II+D   IG  + +   +  +    + E T +D+   +G    IG    + +   I G  
Sbjct: 9   IIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVL 68

Query: 277 -------TYIGDNVLIGGQCGIAGYLKIGDNVQIA 304
                    I D+V IG  C +   + +G    +A
Sbjct: 69  EPLQATPVIIEDDVFIGANCEVVEGVIVGKGAVLA 103



 Score = 30.8 bits (70), Expect = 0.52
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 6/45 (13%)

Query: 129 VKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSI 173
           V IED V I     V  GV       VG G+V+ AGV + ++  I
Sbjct: 76  VIIEDDVFIGANCEVVEGV------IVGKGAVLAAGVVLTQSTPI 114


>gnl|CDD|36536 KOG1322, KOG1322, KOG1322, GDP-mannose
           pyrophosphorylase/mannose-1-phosphate
           guanylyltransferase [Cell wall/membrane/envelope
           biogenesis].
          Length = 371

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 130 KIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGR-----NCSIGAGSSIYSSLI 184
           KI   V++  +A +     IG    +GP   I  GVR+              S I SS++
Sbjct: 260 KIVGNVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIV 319

Query: 185 GNSVILHSGVRIGN 198
           G +V +    RI  
Sbjct: 320 GWNVPIGIWARIDK 333



 Score = 39.1 bits (91), Expect = 0.002
 Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 6/94 (6%)

Query: 216 IGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAG 275
           +G V++     IG N +I      + +IG   +I++ V++  +  I       +   I+ 
Sbjct: 262 VGNVLVDSIASIGENCSIGP----NVVIGPRVRIEDGVRLQDST-ILGADYYETHSEIS- 315

Query: 276 STYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGV 309
           S+ +G NV IG    I     +G NV +A +  V
Sbjct: 316 SSIVGWNVPIGIWARIDKNAVLGKNVIVADEDYV 349



 Score = 32.1 bits (73), Expect = 0.25
 Identities = 27/132 (20%), Positives = 44/132 (33%), Gaps = 20/132 (15%)

Query: 144 YPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGY 203
            PG +I     V   + IG    IG N  IG    I   +      +             
Sbjct: 256 LPGSKIVGNVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETH---- 311

Query: 204 ARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQ--VQIGHNVHI 261
                       I   I+   V IG  + ID+    + ++G+N  + ++  V  G  + I
Sbjct: 312 ----------SEISSSIVGWNVPIGIWARIDK----NAVLGKNVIVADEDYVNEGSGLPI 357

Query: 262 GCGCIIVSQVGI 273
             G  +V +  I
Sbjct: 358 KSGITVVLKPAI 369



 Score = 30.2 bits (68), Expect = 0.96
 Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 7/81 (8%)

Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSS 178
           +   A +GE+  I   VVI P   +  GV +   T +G             +  I +   
Sbjct: 267 VDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILG-------ADYYETHSEISSSIV 319

Query: 179 IYSSLIGNSVILHSGVRIGND 199
            ++  IG    +     +G +
Sbjct: 320 GWNVPIGIWARIDKNAVLGKN 340


>gnl|CDD|100046 cd03356, LbH_G1P_AT_C_like, Left-handed parallel beta-Helix (LbH)
           domain of a group of proteins with similarity to
           glucose-1-phosphate adenylyltransferase: Included in
           this family are glucose-1-phosphate adenylyltransferase,
           mannose-1-phosphate guanylyltransferase, and the
           eukaryotic translation initiation factor eIF-2B
           subunits, epsilon and gamma. Most members of this family
           contains an N-terminal catalytic domain that resembles a
           dinucleotide-binding Rossmann fold, followed by a LbH
           fold domain with at least 4 turns, each containing three
           imperfect tandem repeats of a hexapeptide repeat motif
           (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an
           additional domain of unknown function at the C-terminus.
           Proteins containing hexapeptide repeats are often
           enzymes showing acyltransferase activity..
          Length = 79

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 33/105 (31%), Positives = 45/105 (42%), Gaps = 27/105 (25%)

Query: 160 VIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRV 219
           +IG    IG N  I       +S+IG++V +  GV I N                     
Sbjct: 1   LIGESTVIGENAIIK------NSVIGDNVRIGDGVTITNS-------------------- 34

Query: 220 IIQDKVEIGANSAIDRGTIDD-TIIGENTKIDNQVQIGHNVHIGC 263
           I+ D V IGANS I    I D  +IGEN ++ N   IG +V +  
Sbjct: 35  ILMDNVTIGANSVIVDSIIGDNAVIGENVRVVNLCIIGDDVVVED 79



 Score = 40.3 bits (95), Expect = 9e-04
 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 220 IIQDKVEIGANSAIDRGTI-DDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTY 278
           +I +   IG N+ I    I D+  IG+   I N + +  NV IG   +IV  +       
Sbjct: 1   LIGESTVIGENAIIKNSVIGDNVRIGDGVTITNSI-LMDNVTIGANSVIVDSI------- 52

Query: 279 IGDNVLIGGQCGIAGYLKIGDNVQI 303
           IGDN +IG    +     IGD+V +
Sbjct: 53  IGDNAVIGENVRVVNLCIIGDDVVV 77



 Score = 39.5 bits (93), Expect = 0.001
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 12/65 (18%)

Query: 145 PGVEIGRKTYVGPGSVIGAGVRIG-----------RNCSIGAGSSIYSSLIGNSVILHSG 193
               IG    +   SVIG  VRIG            N +IGA S I  S+IG++ ++   
Sbjct: 4   ESTVIGENAIIKN-SVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIGEN 62

Query: 194 VRIGN 198
           VR+ N
Sbjct: 63  VRVVN 67


>gnl|CDD|36675 KOG1462, KOG1462, KOG1462, Translation initiation factor 2B, gamma
           subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal
           structure and biogenesis].
          Length = 433

 Score = 41.1 bits (96), Expect = 5e-04
 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 8/111 (7%)

Query: 152 KTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIH 211
           K YV   +++GA   +G N  IG  S+I  S+IG++  +   V++ N        V  + 
Sbjct: 322 KNYVKKVALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSIL--MDNVV-VG 378

Query: 212 KIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIG 262
             V+I   II    +IG+ S      + + IIG    ++ + + G  V + 
Sbjct: 379 DGVNIENSIIGMGAQIGSGS-----KLKNCIIGPGYVVEAKGKHGGEVLVS 424


>gnl|CDD|36673 KOG1460, KOG1460, KOG1460, GDP-mannose pyrophosphorylase
           [Carbohydrate transport and metabolism, Cell
           wall/membrane/envelope biogenesis, Posttranslational
           modification, protein turnover, chaperones].
          Length = 407

 Score = 41.1 bits (96), Expect = 5e-04
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 5/67 (7%)

Query: 126 GEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIG 185
           G   +I   V I P A V+P  +IG    +G    +G GVR+ R   I   + I      
Sbjct: 280 GTQAEIIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRL-RESIILDDAEIEE---- 334

Query: 186 NSVILHS 192
           N+V+LHS
Sbjct: 335 NAVVLHS 341


>gnl|CDD|100049 cd03359, LbH_Dynactin_5, Dynactin 5 (or subunit p25); Dynactin is a
           major component of the activator complex that stimulates
           dynein-mediated vesicle transport. Dynactin is a
           heterocomplex of at least eight subunits, including a
           150,000-MW protein called Glued, the actin-capping
           protein Arp1, and dynamatin. In vitro binding
           experiments show that dynactin enhances dynein-dependent
           motility, possibly through interaction with microtubules
           and vesicles. Subunit p25 is part of the pointed-end
           subcomplex in dynactin that also includes p26, p27, and
           Arp11. This subcomplex interacts with membranous
           cargoes. p25 and p27 contain imperfect tandem repeats of
           a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X),
           indicating a left-handed parallel beta helix (LbH)
           structural domain. Proteins containing hexapeptide
           repeats are often enzymes showing acyltransferase
           activity..
          Length = 161

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 44/158 (27%), Positives = 57/158 (36%), Gaps = 47/158 (29%)

Query: 183 LIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGR-VIIQDKVEIGANSAIDRGTI--- 238
           ++    I+ S V I        RG  D+  +  IGR  I+ +   I          +   
Sbjct: 23  VLNGKTIIQSDVII--------RG--DLATV-SIGRYCILSEGCVIRPPFKKFSKGVAFF 71

Query: 239 -----DDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAG 293
                D   IGEN  + N  QIG  VHIG  C+I                   G+  I  
Sbjct: 72  PLHIGDYVFIGENCVV-NAAQIGSYVHIGKNCVI-------------------GRRCI-- 109

Query: 294 YLKIGDNVQIASKSGVLKD--IPAGQQYGGMPARPIGE 329
              I D V+I   + V  D  IP      G PAR IGE
Sbjct: 110 ---IKDCVKILDGTVVPPDTVIPPYSVVSGRPARFIGE 144



 Score = 31.0 bits (71), Expect = 0.53
 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 11/67 (16%)

Query: 125 LGEDVKIEDGVVIAPMAVVYPGVE------IGRKTYVGPGSV-----IGAGVRIGRNCSI 173
           +G    + +G VI P    +          IG   ++G   V     IG+ V IG+NC I
Sbjct: 45  IGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSYVHIGKNCVI 104

Query: 174 GAGSSIY 180
           G    I 
Sbjct: 105 GRRCIIK 111



 Score = 27.2 bits (61), Expect = 7.0
 Identities = 13/48 (27%), Positives = 19/48 (39%)

Query: 123 AFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRN 170
           A +G  V I    VI    ++   V+I   T V P +VI     +   
Sbjct: 90  AQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPYSVVSGR 137


>gnl|CDD|100057 cd04652, LbH_eIF2B_gamma_C, eIF-2B gamma subunit, C-terminal
           Left-handed parallel beta-Helix (LbH) domain: eIF-2B is
           a eukaryotic translation initiator, a guanine nucleotide
           exchange factor (GEF) composed of five different
           subunits (alpha, beta, gamma, delta and epsilon). eIF2B
           is important for regenerating GTP-bound eIF2 during the
           initiation process. This event is obligatory for eIF2 to
           bind initiator methionyl-tRNA, forming the ternary
           initiation complex. The eIF-2B gamma subunit contains an
           N-terminal domain that resembles a dinucleotide-binding
           Rossmann fold and a C-terminal LbH domain with 4 turns,
           each containing three imperfect tandem repeats of a
           hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
           The epsilon and gamma subunits form the catalytic
           subcomplex of eIF-2B, which binds eIF2 and catalyzes
           guanine nucleotide exchange..
          Length = 81

 Score = 37.9 bits (89), Expect = 0.004
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 242 IIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNV 301
           ++GENT++  +  I  +V IG  C I  +V I     I DNV I   C +   + IG+  
Sbjct: 1   LVGENTQVGEKTSIKRSV-IGANCKIGKRVKITNCV-IMDNVTIEDGCTLENCI-IGNGA 57

Query: 302 QIASKSGVLKD 312
            I  K   LKD
Sbjct: 58  VIGEKC-KLKD 67



 Score = 32.9 bits (76), Expect = 0.14
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 149 IGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGN 198
           +G  T VG  + I   V IG NC IG    I + +I ++V +  G  + N
Sbjct: 2   VGENTQVGEKTSIKRSV-IGANCKIGKRVKITNCVIMDNVTIEDGCTLEN 50


>gnl|CDD|100058 cd04745, LbH_paaY_like, paaY-like: This group is composed by
           uncharacterized proteins with similarity to the protein
           product of the E. coli paaY gene, which is part of the
           paa gene cluster responsible for phenylacetic acid
           degradation. Proteins in this group are expected to
           adopt the left-handed parallel beta-helix (LbH)
           structure. They contain imperfect tandem repeats of a
           hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
           Similarity to gamma carbonic anhydrase and
           Ferripyochelin Binding Protein (FBP) may suggest metal
           binding capacity..
          Length = 155

 Score = 35.4 bits (82), Expect = 0.023
 Identities = 46/184 (25%), Positives = 66/184 (35%), Gaps = 54/184 (29%)

Query: 154 YVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKI 213
           +V P +V+   V IG+NC IG  +S+                         RG       
Sbjct: 8   FVHPTAVLIGDVIIGKNCYIGPHASL-------------------------RG------- 35

Query: 214 VHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGI 273
              GR++I+D   +  N  I      DT++ EN             HIG G I      +
Sbjct: 36  -DFGRIVIRDGANVQDNCVIHGFPGQDTVLEENG------------HIGHGAI------L 76

Query: 274 AGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLK--DIPAGQQYGGMPARPIGEYL 331
            G T IG N L+G    +     IG+   + + + V     IP      G PA+ I E  
Sbjct: 77  HGCT-IGRNALVGMNAVVMDGAVIGEESIVGAMAFVKAGTVIPPRSLIAGSPAKVIRELS 135

Query: 332 RHMV 335
              V
Sbjct: 136 DEEV 139



 Score = 33.1 bits (76), Expect = 0.11
 Identities = 30/109 (27%), Positives = 43/109 (39%), Gaps = 28/109 (25%)

Query: 139 PMAVVYPGVEIGRKTYVGPGS---------VIGAGVRIGRNCSIGAGSSIYSSL-----I 184
           P AV+   V IG+  Y+GP +         VI  G  +  NC I       + L     I
Sbjct: 11  PTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHI 70

Query: 185 GNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAI 233
           G+  ILH G  IG             + +V +  V++ D   IG  S +
Sbjct: 71  GHGAILH-GCTIGR------------NALVGMNAVVM-DGAVIGEESIV 105



 Score = 30.4 bits (69), Expect = 0.83
 Identities = 27/103 (26%), Positives = 38/103 (36%), Gaps = 28/103 (27%)

Query: 113 SSFEGGISPQAFLGEDVKIEDGVVIAPMA---------VVYPGVEI----------GRKT 153
           SSF   + P A L  DV I     I P A         V+  G  +          G+ T
Sbjct: 6   SSF---VHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDT 62

Query: 154 YVGPGSVIG-----AGVRIGRNCSIGAGSSIY-SSLIGNSVIL 190
            +     IG      G  IGRN  +G  + +   ++IG   I+
Sbjct: 63  VLEENGHIGHGAILHGCTIGRNALVGMNAVVMDGAVIGEESIV 105



 Score = 29.6 bits (67), Expect = 1.1
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 124 FLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGS 177
           F G+D  +E+   I   A+++ G  IGR   VG  +V+  G  IG    +GA +
Sbjct: 57  FPGQDTVLEENGHIGHGAILH-GCTIGRNALVGMNAVVMDGAVIGEESIVGAMA 109


>gnl|CDD|30797 COG0448, GlgC, ADP-glucose pyrophosphorylase [Carbohydrate
           transport and metabolism].
          Length = 393

 Score = 35.2 bits (81), Expect = 0.027
 Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 173 IGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSA 232
               S + +SL+    I+   V   N      RGV  I K   I   +I   VEIG  + 
Sbjct: 288 FVNDSEVSNSLVAGGCIISGTVE--NSVLF--RGVR-IGKGSVIENSVIMPDVEIGEGAV 342

Query: 233 IDRGTID-DTIIGENTKIDNQVQ 254
           + R  ID + +IGE   I     
Sbjct: 343 LRRAIIDKNVVIGEGVVIGGDKP 365



 Score = 33.2 bits (76), Expect = 0.10
 Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 7/114 (6%)

Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVE---IGRKTYVGPGSVIGAGVRIGRNCSIGA 175
             P A    D ++ + +V A   ++   VE   + R   +G GSVI   V I  +  IG 
Sbjct: 282 NLPPAKFVNDSEVSNSLV-AGGCIISGTVENSVLFRGVRIGKGSVIENSV-IMPDVEIGE 339

Query: 176 GSSIYSSLIGNSVILHSGVRIGNDGFGYAR-GVSDIHKIVHIGR-VIIQDKVEI 227
           G+ +  ++I  +V++  GV IG D     R        IV + + ++I+  +  
Sbjct: 340 GAVLRRAIIDKNVVIGEGVVIGGDKPEEDRKRFRSEEGIVVVPKGMVIKLDIME 393


>gnl|CDD|100056 cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenylyltransferase,
           C-terminal Left-handed parallel beta helix (LbH) domain:
           Glucose-1-phosphate adenylyltransferase is also known as
           ADP-glucose synthase or ADP-glucose pyrophosphorylase.
           It catalyzes the first committed and rate-limiting step
           in starch biosynthesis in plants and glycogen
           biosynthesis in bacteria. It is the enzymatic site for
           regulation of storage polysaccharide accumulation in
           plants and bacteria. The enzyme is a homotetramer, with
           each subunit containing an N-terminal catalytic domain
           that resembles a dinucleotide-binding Rossmann fold and
           a C-terminal LbH fold domain with at 5 turns, each
           containing three imperfect tandem repeats of a
           hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
           The LbH domain is involved in cooperative allosteric
           regulation and oligomerization..
          Length = 104

 Score = 33.2 bits (77), Expect = 0.11
 Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 30/115 (26%)

Query: 159 SVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGR 218
           S++  G  I       +G ++ +S++   V + SG  + +                    
Sbjct: 13  SLVSEGCII-------SGGTVENSVLFRGVRVGSGSVVED-------------------- 45

Query: 219 VIIQDKVEIGANSAIDRGTID-DTIIGENTKI--DNQVQIGHNVHIGCGCIIVSQ 270
            +I   V IG N+ I R  ID + +I +   I  D +           G ++V +
Sbjct: 46  SVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIGGDPEEDRARFYVTEDGIVVVGK 100



 Score = 28.6 bits (65), Expect = 2.7
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 6/49 (12%)

Query: 125 LGEDVKIEDGVVIAPMAVVYPGVEIGRKTY-----VGPGSVIGAGVRIG 168
           L   V++  G V+   +V+ P V IGR        +    VI  GV IG
Sbjct: 31  LFRGVRVGSGSVVED-SVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIG 78



 Score = 28.6 bits (65), Expect = 3.0
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 8/74 (10%)

Query: 235 RGTIDDTIIG-----ENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQC 289
           RG + ++++          ++N V +   V +G G ++   V I  +  IG N +I    
Sbjct: 7   RGEVKNSLVSEGCIISGGTVENSV-LFRGVRVGSGSVVEDSV-IMPNVGIGRNAVIRR-A 63

Query: 290 GIAGYLKIGDNVQI 303
            I   + I D V I
Sbjct: 64  IIDKNVVIPDGVVI 77


>gnl|CDD|100055 cd04650, LbH_FBP, Ferripyochelin Binding Protein (FBP): FBP is an
           outer membrane protein which plays a role in iron
           acquisition. It binds iron when it is complexed with
           pyochelin. It adopts the left-handed parallel beta-helix
           (LbH) structure, and contains imperfect tandem repeats
           of a hexapeptide repeat motif
           (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing
           hexapeptide repeats are often enzymes showing
           acyltransferase activity. Acyltransferase activity has
           not been observed in this group..
          Length = 154

 Score = 32.9 bits (75), Expect = 0.12
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 126 GEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSI 179
           G   +I D V I   AVV+ G ++G    VG G+++  G +IG +  IGAG+ +
Sbjct: 59  GYPTEIGDYVTIGHNAVVH-GAKVGNYVIVGMGAILLNGAKIGDHVIIGAGAVV 111



 Score = 32.9 bits (75), Expect = 0.14
 Identities = 31/142 (21%), Positives = 51/142 (35%), Gaps = 36/142 (25%)

Query: 130 KIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGA---GVRIGRNCSIGAGSSIYSSLIGN 186
           +I     + P + V   V IG  T V   +VI      + IG+  ++    SI++     
Sbjct: 2   RISPKAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTD---- 57

Query: 187 SVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTI-DDTIIGE 245
                          GY                 I D V IG N+ +    + +  I+G 
Sbjct: 58  --------------HGY--------------PTEIGDYVTIGHNAVVHGAKVGNYVIVGM 89

Query: 246 NTKIDNQVQIGHNVHIGCGCII 267
              + N  +IG +V IG G ++
Sbjct: 90  GAILLNGAKIGDHVIIGAGAVV 111



 Score = 29.5 bits (66), Expect = 1.4
 Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 19/120 (15%)

Query: 119 ISPQAFLGE------DVKIEDGVVIAPMAVVYPGVE---IGRKTYVGPGSVI----GAGV 165
           ISP+A++        DV I +   +   AV+    +   IG+ + V     I    G   
Sbjct: 3   ISPKAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPT 62

Query: 166 RIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKV 225
            IG   +IG  + ++ + +GN VI+  G  + N        + D H I+  G V+   K 
Sbjct: 63  EIGDYVTIGHNAVVHGAKVGNYVIVGMGAILLN-----GAKIGD-HVIIGAGAVVTPGKE 116


>gnl|CDD|100062 cd05824, LbH_M1P_guanylylT_C, Mannose-1-phosphate
           guanylyltransferase, C-terminal Left-handed parallel
           beta helix (LbH) domain: Mannose-1-phosphate
           guanylyltransferase is also known as GDP-mannose
           pyrophosphorylase. It catalyzes the synthesis of
           GDP-mannose from GTP and mannose-1-phosphate, and is
           involved in the maintenance of cell wall integrity and
           glycosylation. Similar to ADP-glucose pyrophosphorylase,
           it contains an N-terminal catalytic domain that
           resembles a dinucleotide-binding Rossmann fold and a
           C-terminal LbH fold domain, presumably with 4 turns,
           each containing three imperfect tandem repeats of a
           hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
           Proteins containing hexapeptide repeats are often
           enzymes showing acyltransferase activity..
          Length = 80

 Score = 32.9 bits (75), Expect = 0.13
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 136 VIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYS-SLIGNSVI 189
           +I P A +    +IG    +GP   IG GVR+ R C I + S++   S + +S++
Sbjct: 1   LIDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQR-CVILSNSTVRDHSWVKSSIV 54



 Score = 28.3 bits (63), Expect = 2.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGR 151
           I P A +G+  KI   VVI P   +  GV + R
Sbjct: 2   IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQR 34


>gnl|CDD|100052 cd04646, LbH_Dynactin_6, Dynactin 6 (or subunit p27): Dynactin is a
           major component of the activator complex that stimulates
           dynein-mediated vesicle transport. Dynactin is a
           heterocomplex of at least eight subunits, including a
           150,000-MW protein called Glued, the actin-capping
           protein Arp1, and dynamatin. In vitro binding
           experiments show that dynactin enhances dynein-dependent
           motility, possibly through interaction with microtubules
           and vesicles. Subunit p27 is part of the pointed-end
           subcomplex in dynactin that also includes p25, p26, and
           Arp11. This subcomplex interacts with membranous
           cargoes. p25 and p27 contain the imperfect tandem
           repeats of a hexapeptide repeat motif
           (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed
           parallel beta helix (LbH) structural domain. Proteins
           containing hexapeptide repeats are often enzymes showing
           acyltransferase activity..
          Length = 164

 Score = 32.3 bits (74), Expect = 0.19
 Identities = 14/38 (36%), Positives = 18/38 (47%)

Query: 147 VEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLI 184
           ++IG        S +G  V I   C IGAG  + SS I
Sbjct: 84  LKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEI 121



 Score = 27.7 bits (62), Expect = 5.3
 Identities = 32/99 (32%), Positives = 43/99 (43%), Gaps = 18/99 (18%)

Query: 221 IQDKVEIGANSAID-RGTID----DTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAG 275
           I+  V IG  + +  R TI       IIGEN  I+ QV I +            +  I  
Sbjct: 14  IRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKD---PAEPKPMI-- 68

Query: 276 STYIGDNVL--IGGQCGIAGYLKIGDNVQIASKSGVLKD 312
              IG N +  +G +C     LKIG+N    SKS V K+
Sbjct: 69  ---IGSNNVFEVGCKCE---ALKIGNNNVFESKSFVGKN 101


>gnl|CDD|100059 cd05635, LbH_unknown, Uncharacterized proteins, Left-handed
           parallel beta-Helix (LbH) domain: Members in this group
           are uncharacterized bacterial proteins containing a LbH
           domain with multiple turns, each containing three
           imperfect tandem repeats of a hexapeptide repeat motif
           (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing
           hexapeptide repeats are often enzymes showing
           acyltransferase activity..
          Length = 101

 Score = 32.2 bits (74), Expect = 0.21
 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 8/73 (10%)

Query: 129 VKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSV 188
           + I    VI P AV+   V IG  + V  G+ I     IG  C IG         + +S+
Sbjct: 12  IYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGGE-------VEDSI 64

Query: 189 ILHSGVRIGNDGF 201
           I        +DGF
Sbjct: 65  I-EGYSNKQHDGF 76


>gnl|CDD|39245 KOG4042, KOG4042, KOG4042, Dynactin subunit p27/WS-3, involved in
           transport of organelles along microtubules
           [Intracellular trafficking, secretion, and vesicular
           transport, Cytoskeleton].
          Length = 190

 Score = 30.0 bits (67), Expect = 0.89
 Identities = 35/162 (21%), Positives = 61/162 (37%), Gaps = 19/162 (11%)

Query: 130 KIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVI 189
             E  V IAP AVV    +I     +  G V+           I     IY   IG + I
Sbjct: 4   MTETSVKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVF-----IATAGPIY---IGENNI 55

Query: 190 LHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKI 249
           +     I N     A   SD  + + IG     +  E+G  S+  +       +G+   I
Sbjct: 56  IEEYAVIRNRLEPGAVWDSD-GQPMIIGT---WNVFEVGCKSSAKK-------VGDRNVI 104

Query: 250 DNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGI 291
           +++  +G  V +  GC + ++  +     + +N  + G   +
Sbjct: 105 ESKAYVGDGVSVSSGCSVGAKCTVFSHQNLPENTSVYGATNL 146


>gnl|CDD|100054 cd04649, LbH_THP_succinylT_putative, Putative
           2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP)
           N-succinyltransferase (THP succinyltransferase),
           C-terminal left-handed parallel alpha-helix (LbH)
           domain: This group is composed of mostly uncharacterized
           proteins containing an N-terminal domain of unknown
           function and a C-terminal LbH domain with similarity to
           THP succinyltransferase LbH. THP succinyltransferase
           catalyzes the conversion of tetrahydrodipicolinate and
           succinyl-CoA to N-succinyltetrahydrodipicolinate and
           CoA. It is the committed step in the succinylase pathway
           by which bacteria synthesize L-lysine and
           meso-diaminopimelate, a component of peptidoglycan. The
           enzyme is trimeric and displays the left-handed parallel
           alpha-helix (LbH) structural motif encoded by the
           hexapeptide repeat motif..
          Length = 147

 Score = 27.8 bits (62), Expect = 4.5
 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 9/62 (14%)

Query: 143 VYPGVEIGRKTYVGPGSVI-----GAG---VRIGRNCSIGAGSSIYSSLIGNSVILHSGV 194
           +  GV +G+ + VG G+ I     G G   + IG+ C +GA S I  SL G++ I+ +G+
Sbjct: 44  ISSGVIVGKGSDVGGGASIMGTLSGGGNNVISIGKRCLLGANSGIGISL-GDNCIVEAGL 102

Query: 195 RI 196
            +
Sbjct: 103 YV 104


>gnl|CDD|30504 COG0155, CysI, Sulfite reductase, beta subunit (hemoprotein)
           [Inorganic ion transport and metabolism].
          Length = 510

 Score = 27.2 bits (60), Expect = 6.5
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 241 TIIGENTKIDNQVQIGHNVHI-----GCGCIIVSQVGIAGSTYIGDNVLIGGQ 288
            II     + ++  +   +HI     GCG   ++++G+ G    G  V +GG 
Sbjct: 401 RIIARLEDLLDKHGLPITLHISGCPNGCGRPHLAEIGLVGKAKGGYQVYLGGG 453


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.320    0.140    0.407 

Gapped
Lambda     K      H
   0.267   0.0814    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,117,480
Number of extensions: 226811
Number of successful extensions: 1278
Number of sequences better than 10.0: 1
Number of HSP's gapped: 621
Number of HSP's successfully gapped: 161
Length of query: 347
Length of database: 6,263,737
Length adjustment: 95
Effective length of query: 252
Effective length of database: 4,210,882
Effective search space: 1061142264
Effective search space used: 1061142264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.0 bits)