RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780771|ref|YP_003065184.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Candidatus Liberibacter asiaticus str. psy62] (347 letters) >gnl|CDD|31246 COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]. Length = 338 Score = 302 bits (775), Expect = 1e-82 Identities = 145/331 (43%), Positives = 191/331 (57%), Gaps = 9/331 (2%) Query: 10 HKGIALMKLAQSIGASLLDENFGERMIYSLSPIARASTGDISYIISRKFLNNIEKCKASA 69 L +LAQ +GA L + G+R+I ++P+ A GDIS++ + K+ ++ +A A Sbjct: 1 MPSYTLAELAQQLGAELRGD--GDRVITGVAPLDEAQPGDISFLANPKYRKELKTSRAGA 58 Query: 70 IICSQDIVPFIPKNIPCLLSDKPEVSFAIAGSILYPQAMHMEASSFEGGISPQAFLGEDV 129 +I S F P L+ P ++FA + Y + GI P A + Sbjct: 59 VIVSAKDAAFAPAKKNALVVKDPYLAFAKVAQLFYR------PFNPAAGIHPTAVIDPTA 112 Query: 130 KIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYS-SLIGNSV 188 I V I P V+ GV IG +G G+VIG V+IG I +IY +IGN+V Sbjct: 113 TIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNV 172 Query: 189 ILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTK 248 I+HSG IG DGFGYA KI IGRVII D VEIGAN+ IDRG +DDT+IGE K Sbjct: 173 IIHSGAVIGADGFGYAGTAIGWVKIPQIGRVIIGDDVEIGANTTIDRGALDDTVIGEGVK 232 Query: 249 IDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSG 308 IDN VQIGHNV IG CII QVGIAGS IG V+IGGQ GIAG+L+IGD V I ++SG Sbjct: 233 IDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVGIAGHLEIGDGVTIGARSG 292 Query: 309 VLKDIPAGQQYGGMPARPIGEYLRHMVMLSK 339 V+ I GG+PA+PI E+L+ ++ + Sbjct: 293 VMASITEPGYSGGIPAQPIKEWLKTAALIRR 323 >gnl|CDD|100043 cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).. Length = 205 Score = 274 bits (704), Expect = 2e-74 Identities = 113/205 (55%), Positives = 137/205 (66%), Gaps = 1/205 (0%) Query: 128 DVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYS-SLIGN 186 KI + V I P AV+ GV IG +GPG VIG GV IG +C I +IY +IG+ Sbjct: 1 SAKIGENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGD 60 Query: 187 SVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGEN 246 VI+HSG IG+DGFG+A KI +G VII D VEIGAN+ IDRG + DT+IG+ Sbjct: 61 RVIIHSGAVIGSDGFGFAPDGGGWVKIPQLGGVIIGDDVEIGANTTIDRGALGDTVIGDG 120 Query: 247 TKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASK 306 TKIDN VQI HNV IG C+I +QVGIAGST IGDNV+IGGQ GIAG+L IGD V I + Sbjct: 121 TKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIGGQVGIAGHLTIGDGVVIGAG 180 Query: 307 SGVLKDIPAGQQYGGMPARPIGEYL 331 SGV +P G+ G PA+P E+L Sbjct: 181 SGVTSIVPPGEYVSGTPAQPHREWL 205 >gnl|CDD|100042 cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.. Length = 254 Score = 107 bits (270), Expect = 5e-24 Identities = 60/198 (30%), Positives = 84/198 (42%), Gaps = 15/198 (7%) Query: 137 IAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYS-SLIGNSVILHSGVR 195 I P A+V PG +IG +GP VIG V IG IG+ I + IG + + Sbjct: 2 IHPTAIVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFAS 61 Query: 196 IGND--GFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDD---TIIGENTKID 250 IG Y + R+ I D I I RGT T IG N + Sbjct: 62 IGEAPQDLKYKGEPT---------RLEIGDNNTIREFVTIHRGTAQGGGVTRIGNNNLLM 112 Query: 251 NQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVL 310 V + H+ IG I+ + +AG IGD +IGG + + +IG + + SGV+ Sbjct: 113 AYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGGSGVV 172 Query: 311 KDIPAGQQYGGMPARPIG 328 +D+P G AR G Sbjct: 173 QDVPPYVIAAGNRARLRG 190 Score = 28.9 bits (66), Expect = 1.9 Identities = 13/37 (35%), Positives = 19/37 (51%) Query: 125 LGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVI 161 L V+I D +I ++ V+ IGR VG GS + Sbjct: 135 LAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGGSGV 171 >gnl|CDD|31245 COG1043, LpxA, Acyl-[acyl carrier protein]. Length = 260 Score = 96.8 bits (241), Expect = 9e-21 Identities = 58/196 (29%), Positives = 86/196 (43%), Gaps = 11/196 (5%) Query: 137 IAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYS-SLIGNSVILHSGVR 195 I P A++ PG EIG +GP +IG V IG + + + + IG + + Sbjct: 6 IHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFAS 65 Query: 196 IGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDD---TIIGENTKIDNQ 252 IG D D+ R+II D I I RGT+ T IG+N I Sbjct: 66 IGEDP-------QDLKYKGEPTRLIIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAY 118 Query: 253 VQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKD 312 + H+ IG CI+ + +AG +GD +IGG + +++IG + I S V +D Sbjct: 119 AHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLSAVHQFVRIGAHAMIGGLSAVSQD 178 Query: 313 IPAGQQYGGMPARPIG 328 +P G AR G Sbjct: 179 VPPYVIASGNHARLRG 194 Score = 35.5 bits (82), Expect = 0.021 Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 8/108 (7%) Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSS 178 I A + D I + ++A A + VE+G +G S + VRIG + IG S+ Sbjct: 115 IMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLSAVHQFVRIGAHAMIGGLSA 174 Query: 179 I------YSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVI 220 + Y GN L +G G++R +IH + +++ Sbjct: 175 VSQDVPPYVIASGNHARLRGLNIVGLKRRGFSR--EEIHALRKAYKLL 220 >gnl|CDD|31400 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]. Length = 460 Score = 94.9 bits (236), Expect = 3e-20 Identities = 57/192 (29%), Positives = 80/192 (41%), Gaps = 15/192 (7%) Query: 127 EDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGN 186 I V I V+ P V + T +G VIG G I ++ IG + I + + Sbjct: 261 ATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVI-KDSVIGDNAVIKAYSVIE 319 Query: 187 SVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGEN 246 + G +G F R + + VHIG + K IG S T +G+ Sbjct: 320 GSTVGEGATVGP--FARLRPGAVLGADVHIGNFVEVKKATIGKGSKAGH----LTYLGD- 372 Query: 247 TKIDNQVQIGHNVHIGCGCIIVSQVGIAGS-TYIGDNVLIGGQCGIAGYLKIGDNVQIAS 305 +IG NV+IG G I + G T IGDNV IG + + IGD IA+ Sbjct: 373 ------AEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQLVAPVTIGDGATIAA 426 Query: 306 KSGVLKDIPAGQ 317 S + KD+P G Sbjct: 427 GSTITKDVPEGA 438 >gnl|CDD|100044 cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.. Length = 193 Score = 86.7 bits (216), Expect = 9e-18 Identities = 61/194 (31%), Positives = 90/194 (46%), Gaps = 29/194 (14%) Query: 131 IEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVIL 190 I+ V I V+ PGV + KT +G VIG I ++ +IG G I +S + ++ Sbjct: 12 IDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVI-KDSTIGDGVVIKASSVIEGAVI 70 Query: 191 HSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKI- 249 +G +G F + R + + + VHIG + VE I + IGE +K Sbjct: 71 GNGATVGP--FAHLRPGTVLGEGVHIG-----NFVE-----------IKKSTIGEGSKAN 112 Query: 250 ------DNQVQIGHNVHIGCGCIIVSQVGIAGS-TYIGDNVLIGGQCGIAGYLKIGDNVQ 302 D +IG V+IG G I + G+ T IGDNV IG + + IGD Sbjct: 113 HLSYLGD--AEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAPVTIGDGAT 170 Query: 303 IASKSGVLKDIPAG 316 IA+ S + KD+P G Sbjct: 171 IAAGSTITKDVPPG 184 Score = 40.1 bits (95), Expect = 9e-04 Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 10/94 (10%) Query: 218 RVIIQDKVEIGANSAIDRGTI--DDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAG 275 I VEIG + ID G I T+IGE+ I I + IG G +I + I G Sbjct: 9 TTYIDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIK-DSTIGDGVVIKASSVIEG 67 Query: 276 STYIGDNVLIG------GQCGIAGYLKIGDNVQI 303 + IG+ +G + + IG+ V+I Sbjct: 68 AV-IGNGATVGPFAHLRPGTVLGEGVHIGNFVEI 100 Score = 37.8 bits (89), Expect = 0.005 Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 7/63 (11%) Query: 245 ENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIA 304 E T ID V+IG +V I G I + G T IG++ +IG C I IGD V I Sbjct: 8 ETTYIDGDVEIGVDVVIDPGVI------LEGKTVIGEDCVIGPNCVIKD-STIGDGVVIK 60 Query: 305 SKS 307 + S Sbjct: 61 ASS 63 >gnl|CDD|146990 pfam04613, LpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD. UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.-) catalyses an early step in lipid A biosynthesis: UDP-3-O-(3-hydroxytetradecanoyl)glucosamine + (R)-3-hydroxytetradecanoyl- [acyl carrier protein] -> UDP-2,3-bis(3-hydroxytetradecanoyl)glucosamine + [acyl carrier protein]. Members of this family also contain a hexapeptide repeat (pfam00132). This family constitutes the non-repeating region of LPXD proteins. Length = 72 Score = 83.0 bits (206), Expect = 1e-16 Identities = 23/72 (31%), Positives = 41/72 (56%) Query: 32 GERMIYSLSPIARASTGDISYIISRKFLNNIEKCKASAIICSQDIVPFIPKNIPCLLSDK 91 G+R I ++P+ A GDIS++ + K+L ++ KASA+I + D +P+ I L+ Sbjct: 1 GDREISGIAPLEEAGPGDISFLANPKYLKQLKTTKASAVIVTPDFADLVPEGIALLVVKN 60 Query: 92 PEVSFAIAGSIL 103 P ++FA + Sbjct: 61 PYLAFAKLLQLF 72 >gnl|CDD|31401 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]. Length = 358 Score = 70.0 bits (171), Expect = 9e-13 Identities = 42/139 (30%), Positives = 61/139 (43%), Gaps = 25/139 (17%) Query: 130 KIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVI 189 IE+ VVI A + V IG +GPG++IG IG +IG G I +S+I + Sbjct: 245 PIEEPVVIIRSAYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMD--- 301 Query: 190 LHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKI 249 V IG+ +IG II + +IGA+ I D +IG N++I Sbjct: 302 ---NVVIGH--------------GSYIGDSIIGENCKIGAS-----LIIGDVVIGINSEI 339 Query: 250 DNQVQIGHNVHIGCGCIIV 268 V +G + G I Sbjct: 340 LPGVVVGPGSVVESGEIED 358 Score = 38.0 bits (88), Expect = 0.003 Identities = 27/93 (29%), Positives = 32/93 (34%), Gaps = 1/93 (1%) Query: 221 IQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIG 280 +D +E G I E I I V IG G I I T IG Sbjct: 224 PEDLLEANELLLRGDGKSPLGPIEEPVVIIRSAYIIGPVVIGPGAKIGPGALIGPYTVIG 283 Query: 281 DNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDI 313 + V IG I + I DNV I S + I Sbjct: 284 EGVTIGNGVEIKNSI-IMDNVVIGHGSYIGDSI 315 >gnl|CDD|100050 cd03360, LbH_AT_putative, Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.. Length = 197 Score = 66.7 bits (164), Expect = 8e-12 Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 3/113 (2%) Query: 213 IVHIGRVIIQDKVEIGANSAIDRGTI--DDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQ 270 ++H ++ IG I G + D IG+N I+ IGH+ IG I Sbjct: 86 LIH-PSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPG 144 Query: 271 VGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMP 323 V ++G IG+ IG I + IG I + + V KD+P G G P Sbjct: 145 VVLSGGVTIGEGAFIGAGATIIQGVTIGAGAIIGAGAVVTKDVPDGSVVVGNP 197 Score = 62.9 bits (154), Expect = 1e-10 Identities = 42/147 (28%), Positives = 56/147 (38%), Gaps = 37/147 (25%) Query: 135 VVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSI-YSSLIGNSVILHSG 193 +I P AVV P IG + G+VI RIG N I G+ I + +IG+ V + G Sbjct: 85 TLIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPG 144 Query: 194 VRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQV 253 V + G V I + IGA + TII V Sbjct: 145 VVLS-------------------GGVTIGEGAFIGAGA---------TII-------QGV 169 Query: 254 QIGHNVHIGCGCIIVSQVGIAGSTYIG 280 IG IG G ++ V GS +G Sbjct: 170 TIGAGAIIGAGAVVTKDVP-DGSVVVG 195 Score = 58.7 bits (143), Expect = 2e-09 Identities = 28/70 (40%), Positives = 37/70 (52%) Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSS 178 I+ A +G D I D V IAP V+ GV IG ++G G+ I GV IG IGAG+ Sbjct: 123 INTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQGVTIGAGAIIGAGAV 182 Query: 179 IYSSLIGNSV 188 + + SV Sbjct: 183 VTKDVPDGSV 192 >gnl|CDD|31247 COG1045, CysE, Serine acetyltransferase [Amino acid transport and metabolism]. Length = 194 Score = 62.2 bits (151), Expect = 2e-10 Identities = 41/121 (33%), Positives = 57/121 (47%), Gaps = 14/121 (11%) Query: 215 HIGRVIIQDKVEIGANSAIDRGTIDD----TIIGENTKIDNQVQIGHNVHIGCGCIIVSQ 270 + R + +EI + I RG D +IGE I + V I H V +G Sbjct: 60 SLSRFLFG--IEIHPGAKIGRGLFIDHGTGVVIGETAVIGDDVTIYHGVTLG------GT 111 Query: 271 VGIAGSTY--IGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPIG 328 +G + IG+ V IG I G ++IGDN +I + S VLKD+P G+PAR IG Sbjct: 112 GKESGKRHPTIGNGVYIGAGAKILGNIEIGDNAKIGAGSVVLKDVPPNATVVGVPARVIG 171 Query: 329 E 329 Sbjct: 172 R 172 Score = 37.6 bits (87), Expect = 0.005 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 30/102 (29%) Query: 143 VYPGVEIGRKTYV--GPGSVIGAGVRIGRNCSIGAGSSIYSS---------LIGNSVILH 191 ++PG +IGR ++ G G VIG IG + +I G ++ + IGN V + Sbjct: 70 IHPGAKIGRGLFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIG 129 Query: 192 SGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAI 233 +G +I +G + I D +IGA S + Sbjct: 130 AGAKI-------------------LGNIEIGDNAKIGAGSVV 152 Score = 36.0 bits (83), Expect = 0.015 Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 20/85 (23%) Query: 126 GEDVKIEDGVVIAPMAVVYPGVEIG--------RKTYVGPGSVIGAG------VRIGRNC 171 GE I D V I Y GV +G R +G G IGAG + IG N Sbjct: 91 GETAVIGDDVTI------YHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNIEIGDNA 144 Query: 172 SIGAGSSIYSSLIGNSVILHSGVRI 196 IGAGS + + N+ ++ R+ Sbjct: 145 KIGAGSVVLKDVPPNATVVGVPARV 169 >gnl|CDD|39947 KOG4750, KOG4750, KOG4750, Serine O-acetyltransferase [Amino acid transport and metabolism]. Length = 269 Score = 59.3 bits (143), Expect = 1e-09 Identities = 40/110 (36%), Positives = 51/110 (46%), Gaps = 6/110 (5%) Query: 219 VIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTY 278 V I +IG +D T +IGE + + V I H V +G G Sbjct: 149 VDIHPAAKIGKGILLDHAT--GVVIGETAVVGDNVSILHPVTLGG---TGKGSG-DRHPK 202 Query: 279 IGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPIG 328 IGDNVLIG I G + IG+ IA+ S VLKD+P G PA+ IG Sbjct: 203 IGDNVLIGAGVTILGNVTIGEGAVIAAGSVVLKDVPPNTLAVGNPAKLIG 252 Score = 31.2 bits (70), Expect = 0.45 Identities = 11/32 (34%), Positives = 15/32 (46%) Query: 130 KIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVI 161 KI D V+I + V IG + GSV+ Sbjct: 202 KIGDNVLIGAGVTILGNVTIGEGAVIAAGSVV 233 Score = 30.0 bits (67), Expect = 1.1 Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 22/109 (20%) Query: 110 MEASSFEGGISPQAFLGEDVKIED--GVVIAPMAVVYPGV-------------------- 147 + +F I P A +G+ + ++ GVVI AVV V Sbjct: 142 RISPNFGVDIHPAAKIGKGILLDHATGVVIGETAVVGDNVSILHPVTLGGTGKGSGDRHP 201 Query: 148 EIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRI 196 +IG +G G I V IG I AGS + + N++ + + ++ Sbjct: 202 KIGDNVLIGAGVTILGNVTIGEGAVIAAGSVVLKDVPPNTLAVGNPAKL 250 >gnl|CDD|100053 cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.. Length = 109 Score = 59.0 bits (144), Expect = 2e-09 Identities = 31/104 (29%), Positives = 40/104 (38%), Gaps = 15/104 (14%) Query: 239 DDTIIGENTKID--NQVQIGHNVHIGCGCIIVS-------------QVGIAGSTYIGDNV 283 D+ IG I + IG NV IG I Q + IGD+V Sbjct: 6 DNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDV 65 Query: 284 LIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPI 327 IG I + IGD + + S V KD+P G PA+ I Sbjct: 66 WIGANVVILPGVTIGDGAVVGAGSVVTKDVPPNSIVAGNPAKVI 109 Score = 48.2 bits (116), Expect = 3e-06 Identities = 30/106 (28%), Positives = 39/106 (36%), Gaps = 23/106 (21%) Query: 146 GVEIGRKTYVGPGSVIGA--GVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGY 203 + IG Y+GPG VI A G+ IG N IG +IY Sbjct: 1 NISIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDH-----------------NHDI 43 Query: 204 ARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKI 249 I + V ++I D V IGAN I G IG+ + Sbjct: 44 DDPERPIEQGVTSAPIVIGDDVWIGANVVILPG----VTIGDGAVV 85 Score = 42.4 bits (101), Expect = 2e-04 Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 19/71 (26%) Query: 126 GEDVKIEDGVVIAPMAVVYPG-------------------VEIGRKTYVGPGSVIGAGVR 166 G + I D V+I P +Y + IG ++G VI GV Sbjct: 19 GGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPGVT 78 Query: 167 IGRNCSIGAGS 177 IG +GAGS Sbjct: 79 IGDGAVVGAGS 89 Score = 34.0 bits (79), Expect = 0.059 Identities = 16/41 (39%), Positives = 19/41 (46%) Query: 121 PQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVI 161 Q + I D V I V+ PGV IG VG GSV+ Sbjct: 51 EQGVTSAPIVIGDDVWIGANVVILPGVTIGDGAVVGAGSVV 91 >gnl|CDD|100051 cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.. Length = 153 Score = 58.6 bits (143), Expect = 2e-09 Identities = 52/186 (27%), Positives = 69/186 (37%), Gaps = 58/186 (31%) Query: 148 EIGRKTYVGPGS-VIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARG 206 EI ++ P + VIG V +G S+ G+ + RG Sbjct: 1 EIDPSAFIAPNATVIGD-VTLGEGSSVWFGAVL-------------------------RG 34 Query: 207 VSDIHKIVHIG-RVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGC 265 D++ I IG R IQD S + TIIG+N V +GH + GC Sbjct: 35 --DVNPI-RIGERTNIQD------GSVLHVDPGYPTIIGDN------VTVGHGAVLH-GC 78 Query: 266 IIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVL--KDIPAGQQYGGMP 323 I GDN LIG I IG +A+ S V K IP G G P Sbjct: 79 TI------------GDNCLIGMGAIILDGAVIGKGSIVAAGSLVPPGKVIPPGSLVAGSP 126 Query: 324 ARPIGE 329 A+ + E Sbjct: 127 AKVVRE 132 Score = 48.9 bits (118), Expect = 2e-06 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 15/97 (15%) Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVV---YPGVEIGRKTYVGPGSVI----GAGVRIGRNC 171 I+P A + DV + +G + AV+ + IG +T + GSV+ G IG N Sbjct: 8 IAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNV 67 Query: 172 SIGAGSSIYS------SLIG-NSVILHSGVRIGNDGF 201 ++G G+ ++ LIG ++IL G IG Sbjct: 68 TVGHGAVLHGCTIGDNCLIGMGAIIL-DGAVIGKGSI 103 Score = 46.6 bits (112), Expect = 9e-06 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Query: 126 GEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGS 177 G I D V + AV++ G IG +G G++I G IG+ + AGS Sbjct: 58 GYPTIIGDNVTVGHGAVLH-GCTIGDNCLIGMGAIILDGAVIGKGSIVAAGS 108 Score = 33.5 bits (78), Expect = 0.093 Identities = 12/38 (31%), Positives = 19/38 (50%) Query: 130 KIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRI 167 I D +I A++ G IG+ + V GS++ G I Sbjct: 79 TIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPPGKVI 116 Score = 26.6 bits (60), Expect = 9.5 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 2/45 (4%) Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVG--PGSVI 161 I A + + I G ++A ++V PG I + V P V+ Sbjct: 86 IGMGAIILDGAVIGKGSIVAAGSLVPPGKVIPPGSLVAGSPAKVV 130 >gnl|CDD|100048 cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.. Length = 119 Score = 57.9 bits (141), Expect = 4e-09 Identities = 33/123 (26%), Positives = 45/123 (36%), Gaps = 19/123 (15%) Query: 221 IQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCII------------- 267 I D IG N I+ D IG+N KI + V I V I I Sbjct: 1 IGDNCIIGTNVFIEN----DVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPR 56 Query: 268 --VSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPAR 325 + + T + IG I + IG+ + + + V KD+P G PAR Sbjct: 57 SKIYRKWELKGTTVKRGASIGANATILPGVTIGEYALVGAGAVVTKDVPPYALVVGNPAR 116 Query: 326 PIG 328 IG Sbjct: 117 IIG 119 Score = 46.0 bits (110), Expect = 1e-05 Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 15/70 (21%) Query: 123 AFLGEDVKIEDGVVIAPMAV---------------VYPGVEIGRKTYVGPGSVIGAGVRI 167 + E V IED V I P V G + R +G + I GV I Sbjct: 29 VSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIYRKWELKGTTVKRGASIGANATILPGVTI 88 Query: 168 GRNCSIGAGS 177 G +GAG+ Sbjct: 89 GEYALVGAGA 98 Score = 40.6 bits (96), Expect = 6e-04 Identities = 29/98 (29%), Positives = 35/98 (35%), Gaps = 26/98 (26%) Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIG---------------A 163 I F+ DVKI D V I +Y GV I ++GP V Sbjct: 7 IGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIYRKWELK 66 Query: 164 GVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGF 201 G + R SIGA N+ IL GV IG Sbjct: 67 GTTVKRGASIGA----------NATIL-PGVTIGEYAL 93 Score = 38.3 bits (90), Expect = 0.003 Identities = 12/33 (36%), Positives = 17/33 (51%) Query: 129 VKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVI 161 ++ G I A + PGV IG VG G+V+ Sbjct: 68 TTVKRGASIGANATILPGVTIGEYALVGAGAVV 100 >gnl|CDD|36674 KOG1461, KOG1461, KOG1461, Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]. Length = 673 Score = 54.5 bits (131), Expect = 5e-08 Identities = 34/93 (36%), Positives = 43/93 (46%), Gaps = 13/93 (13%) Query: 211 HKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQ 270 I V++ V +GAN I GT IG +KI N V IG C I S Sbjct: 314 RNIYKSPDVVLSHSVIVGANVVIGAGTK----IGSGSKISNSV-------IGANCRIGSN 362 Query: 271 VGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQI 303 V I S +I +NV IG C I + I D+V+I Sbjct: 363 VRIKNS-FIWNNVTIGDNCRI-DHAIICDDVKI 393 Score = 52.6 bits (126), Expect = 1e-07 Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 5/114 (4%) Query: 132 EDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILH 191 VV++ +V V IG T +G GS I V IG NC IG+ I +S I N+V + Sbjct: 319 SPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSV-IGANCRIGSNVRIKNSFIWNNVTIG 377 Query: 192 SGVRIGN----DGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDT 241 RI + D G V V++ + NS + + T +++ Sbjct: 378 DNCRIDHAIICDDVKIGEGAILKPGSVLGFGVVVGRNFVLPKNSKVRQPTTEES 431 Score = 48.0 bits (114), Expect = 4e-06 Identities = 39/119 (32%), Positives = 51/119 (42%), Gaps = 17/119 (14%) Query: 151 RKTYVGPGSVIGAGVRIGRNCSIGAGSSI-YSSLIGNSVILHSGVRIGNDGFGYARGVSD 209 R Y P V+ V +G N IGAG+ I S I NSVI + RIG++ Sbjct: 314 RNIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVI-GANCRIGSN---------- 362 Query: 210 IHKIVHIGRVIIQDKVEIGANSAIDRGTI-DDTIIGENTKIDNQVQIGHNVHIGCGCII 267 V I I + V IG N ID I DD IGE + +G V +G ++ Sbjct: 363 ----VRIKNSFIWNNVTIGDNCRIDHAIICDDVKIGEGAILKPGSVLGFGVVVGRNFVL 417 Score = 29.9 bits (67), Expect = 1.1 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 11/59 (18%) Query: 122 QAFLGEDVKIE-----------DGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGR 169 +F+ +V I D V I A++ PG +G VG V+ ++ + Sbjct: 367 NSFIWNNVTIGDNCRIDHAIICDDVKIGEGAILKPGSVLGFGVVVGRNFVLPKNSKVRQ 425 >gnl|CDD|100045 cd03354, LbH_SAT, Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.. Length = 101 Score = 54.4 bits (132), Expect = 5e-08 Identities = 37/103 (35%), Positives = 49/103 (47%), Gaps = 6/103 (5%) Query: 221 IQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIG 280 I +IG ID GT +IGE I + I V +G + G IG Sbjct: 5 IHPGAKIGPGLFIDHGT--GIVIGETAVIGDNCTIYQGVTLG----GKGKGGGKRHPTIG 58 Query: 281 DNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMP 323 DNV+IG I G + IGDNV+I + + V KD+PA G+P Sbjct: 59 DNVVIGAGAKILGNITIGDNVKIGANAVVTKDVPANSTVVGVP 101 Score = 39.7 bits (94), Expect = 0.001 Identities = 36/137 (26%), Positives = 52/137 (37%), Gaps = 41/137 (29%) Query: 146 GVEIGRKTYVGPGSVI--GAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGY 203 G++I +GPG I G G+ IG IG ++ ++ GV +G G G Sbjct: 2 GIDIHPGAKIGPGLFIDHGTGIVIGETAVIG-----------DNCTIYQGVTLGGKGKGG 50 Query: 204 ARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGC 263 + I D V IGA + I+G + IG NV IG Sbjct: 51 GKRH-----------PTIGDNVVIGAGA---------KILG-------NITIGDNVKIGA 83 Query: 264 GCIIVSQVGIAGSTYIG 280 ++ V A ST +G Sbjct: 84 NAVVTKDVP-ANSTVVG 99 Score = 37.8 bits (89), Expect = 0.004 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 2/74 (2%) Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPG--VEIGRKTYVGPGSVIGAGVRIGRNCSIGAG 176 I A +G++ I GV + IG +G G+ I + IG N IGA Sbjct: 25 IGETAVIGDNCTIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIGDNVKIGAN 84 Query: 177 SSIYSSLIGNSVIL 190 + + + NS ++ Sbjct: 85 AVVTKDVPANSTVV 98 >gnl|CDD|100060 cd05636, LbH_G1P_TT_C_like, Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.. Length = 163 Score = 53.0 bits (128), Expect = 1e-07 Identities = 33/185 (17%), Positives = 68/185 (36%), Gaps = 32/185 (17%) Query: 112 ASSFEGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNC 171 EG + + V I +G ++ A + V IG+ +GP + I +G C Sbjct: 1 KDEIEGTVEEGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGC 60 Query: 172 SIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANS 231 +G + +S+I + G ++ + Y +G ++ + V +GA + Sbjct: 61 VVGNSVEVKNSIIMD------GTKVPH--LNY------------VGDSVLGENVNLGAGT 100 Query: 232 AI-----DRGTIDDTIIGENTKIDNQVQ-----IGHNVHIGCGCIIVSQVGIAGSTYIGD 281 D + + GE ++D + IG V G + V I +++ Sbjct: 101 ITANLRFDDKPVKVRLKGE--RVDTGRRKLGAIIGDGVKTGINVSLNPGVKIGPGSWVYP 158 Query: 282 NVLIG 286 ++ Sbjct: 159 GCVVR 163 Score = 36.0 bits (84), Expect = 0.017 Identities = 19/51 (37%), Positives = 22/51 (43%) Query: 253 VQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQI 303 V I V IG G I+ S I G IG IG I GY +GD + Sbjct: 12 VTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVV 62 Score = 31.8 bits (73), Expect = 0.31 Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 11/84 (13%) Query: 221 IQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIG 280 +++ V I I G I + I+ V IG IG I G T +G Sbjct: 8 VEEGVTIKGPVWIGEGAI----VRSGAYIEGPVIIGKGCEIGPNAYI------RGYTVLG 57 Query: 281 DNVLIGGQCGIAGYLKIGDNVQIA 304 D ++G + + I D ++ Sbjct: 58 DGCVVGNSVEVKNSI-IMDGTKVP 80 >gnl|CDD|30459 COG0110, WbbJ, Acetyltransferase (isoleucine patch superfamily) [General function prediction only]. Length = 190 Score = 52.6 bits (125), Expect = 2e-07 Identities = 33/134 (24%), Positives = 49/134 (36%), Gaps = 9/134 (6%) Query: 203 YARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIG 262 + + + + + IG I ++GE I + V +G NV I Sbjct: 46 GIKIGEVAVIRPPVRIDLGEKNLTIGDLCFIGVNV--VILVGEGITIGDNVVVGPNVTIY 103 Query: 263 CGCIIVSQVG-------IAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPA 315 V AG IG++V IG I + IG+ I + S V KD+P Sbjct: 104 TNSHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVTKDVPP 163 Query: 316 GQQYGGMPARPIGE 329 G PAR I + Sbjct: 164 YGIVAGNPARVIRK 177 Score = 39.9 bits (92), Expect = 0.001 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 19/103 (18%) Query: 118 GISPQAFLGEDVKIEDGVVIAPMAVVYPG-------------------VEIGRKTYVGPG 158 G++ +GE + I D VV+ P +Y V IG ++G G Sbjct: 77 GVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAG 136 Query: 159 SVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGF 201 +VI GV IG IGAGS + + ++ + R+ Sbjct: 137 AVILPGVTIGEGAVIGAGSVVTKDVPPYGIVAGNPARVIRKRD 179 Score = 36.0 bits (82), Expect = 0.015 Identities = 29/124 (23%), Positives = 46/124 (37%), Gaps = 5/124 (4%) Query: 129 VKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIY---SSLIG 185 VK+ I V E+ + + IG C IG I IG Sbjct: 32 VKLGRYAEILGRLVGIKIGEVAVIRPPVRIDLGEKNLTIGDLCFIGVNVVILVGEGITIG 91 Query: 186 NSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTI--DDTII 243 ++V++ V I + ++I +V G V I + V IGA + I G + +I Sbjct: 92 DNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILPGVTIGEGAVI 151 Query: 244 GENT 247 G + Sbjct: 152 GAGS 155 Score = 27.6 bits (60), Expect = 5.1 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 6/53 (11%) Query: 109 HMEASSFEGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVI 161 + A+ + +GEDV I G VI PGV IG +G GSV+ Sbjct: 111 FVTANIGALVGAGPVTIGEDVWIGAGAVIL------PGVTIGEGAVIGAGSVV 157 >gnl|CDD|100063 cd05825, LbH_wcaF_like, wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.. Length = 107 Score = 51.5 bits (124), Expect = 3e-07 Identities = 31/120 (25%), Positives = 45/120 (37%), Gaps = 31/120 (25%) Query: 224 KVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQ-----VG------ 272 + IG NS I GE I N + IG I SQ G Sbjct: 3 NLTIGDNSWI----------GEGVWIYNLAPV----TIGSDACI-SQGAYLCTGSHDYRS 47 Query: 273 -----IAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPI 327 I IGD + + + + IG+ + ++S V++D+PA Y G PA P+ Sbjct: 48 PAFPLITAPIVIGDGAWVAAEAFVGPGVTIGEGAVVGARSVVVRDLPAWTVYAGNPAVPV 107 Score = 36.8 bits (86), Expect = 0.008 Identities = 13/49 (26%), Positives = 22/49 (44%) Query: 140 MAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSV 188 ++ + IG +V + +G GV IG +GA S + L +V Sbjct: 50 FPLITAPIVIGDGAWVAAEAFVGPGVTIGEGAVVGARSVVVRDLPAWTV 98 >gnl|CDD|100047 cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).. Length = 169 Score = 48.6 bits (117), Expect = 2e-06 Identities = 38/110 (34%), Positives = 42/110 (38%), Gaps = 26/110 (23%) Query: 244 GENTKIDNQVQIGHN--------VHIGCGCIIVSQVGI-------------AGSTY---- 278 G N I + N V IG +I V I G Y Sbjct: 60 GYNIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTAGHPLDPEERNRGLEYAKPI 119 Query: 279 -IGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPARPI 327 IGDNV IGG I + IGDN I + S V KDIPA G PAR I Sbjct: 120 TIGDNVWIGGGVIILPGVTIGDNSVIGAGSVVTKDIPANVVAAGNPARVI 169 Score = 38.2 bits (90), Expect = 0.004 Identities = 15/31 (48%), Positives = 19/31 (61%) Query: 147 VEIGRKTYVGPGSVIGAGVRIGRNCSIGAGS 177 + IG ++G G +I GV IG N IGAGS Sbjct: 119 ITIGDNVWIGGGVIILPGVTIGDNSVIGAGS 149 Score = 34.3 bits (80), Expect = 0.050 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 6/36 (16%) Query: 129 VKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAG 164 + I D V I ++ PGV IG SVIGAG Sbjct: 119 ITIGDNVWIGGGVIILPGVTIGD------NSVIGAG 148 >gnl|CDD|34410 COG4801, COG4801, Predicted acyltransferase [General function prediction only]. Length = 277 Score = 48.4 bits (115), Expect = 3e-06 Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 2/87 (2%) Query: 218 RVIIQDKVEIGANSAIDRGTIDDTII-GENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGS 276 ++++ V IG NS + G + + II GE +I + + ++ I C + V + Sbjct: 16 IIVVKGDVIIGKNSMLKYGVVGEEIIVGERVRIYGDI-VAKDIRIDMWCKVTGNVIVEND 74 Query: 277 TYIGDNVLIGGQCGIAGYLKIGDNVQI 303 YIG+ I G+ + G L IG +V I Sbjct: 75 AYIGEFSSIKGKLTVIGDLDIGADVII 101 Score = 27.2 bits (60), Expect = 7.4 Identities = 42/206 (20%), Positives = 76/206 (36%), Gaps = 23/206 (11%) Query: 125 LGEDVKIEDGVVIAPMAV-----VYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSI 179 +GE V+I +V + + V V + Y+G S I + + + IGA I Sbjct: 42 VGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGKLTVIGDLDIGADVII 101 Query: 180 YSSLI-GNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTI 238 + +++ + V + F Y + + + +++ + G I I Sbjct: 102 EGGFVAKGWIVIRNPVPVLEFLFLYLSVLLRLGRAEEAEKLLEELFESDGGPLIIPADYI 161 Query: 239 ---------DDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQC 289 DD +G +++ V+ G GCG GS +++L+G Sbjct: 162 VSDERIKVGDDAFVGTVCRLEGNVKAGVIS--GCGYY------GFGSIRGRNDILVGNNE 213 Query: 290 GIAGYLKIGDNVQIASKSGVLKDIPA 315 I G + V+ S VL DI A Sbjct: 214 PIHGPVANRGFVKTISNVEVLGDISA 239 >gnl|CDD|31007 COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]. Length = 176 Score = 47.5 bits (113), Expect = 5e-06 Identities = 48/184 (26%), Positives = 65/184 (35%), Gaps = 56/184 (30%) Query: 149 IGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVS 208 I +V P + + VRIG SI G+ + RG Sbjct: 14 IDPTAFVAPSATVIGDVRIGAGVSIWPGAVL-------------------------RG-- 46 Query: 209 DIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHI-GCGCII 267 D+ I R IQD V I A+ IG++ V IGH + GC Sbjct: 47 DVEPIRIGARTNIQDGVVIHADPGYP------VTIGDD------VTIGHGAVVHGC---- 90 Query: 268 VSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVL--KDIPAGQQYGGMPAR 325 IGDNVLIG + IGD + + + V K+IP G G PA+ Sbjct: 91 ----------TIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIPGGSLVVGSPAK 140 Query: 326 PIGE 329 + Sbjct: 141 VVRP 144 Score = 47.1 bits (112), Expect = 8e-06 Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 28/135 (20%) Query: 121 PQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGV---RIGRNCSIGAGS 177 ++ G KI+ +AP A V V IG + PG+V+ V RIG +I G Sbjct: 4 IYSYEGLSPKIDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGV 63 Query: 178 SIYSS-----------LIGNSVILHSGVRIGND---GFGYARGVSDIHKIVHIGRVIIQD 223 I++ IG+ ++H G IG++ G G + + IG D Sbjct: 64 VIHADPGYPVTIGDDVTIGHGAVVH-GCTIGDNVLIGMG-----ATVLDGAVIG-----D 112 Query: 224 KVEIGANSAIDRGTI 238 +GA + + G Sbjct: 113 GSIVGAGALVTPGKE 127 Score = 44.8 bits (106), Expect = 4e-05 Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 1/73 (1%) Query: 126 GEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIG 185 G V I D V I AVV+ G IG +G G+ + G IG +GAG+ + Sbjct: 70 GYPVTIGDDVTIGHGAVVH-GCTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEI 128 Query: 186 NSVILHSGVRIGN 198 L G Sbjct: 129 PGGSLVVGSPAKV 141 Score = 44.0 bits (104), Expect = 7e-05 Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 13/116 (11%) Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVV---YPGVEIGRKTYVGPGSVI----GAGVRIGRNC 171 ++P A + DV+I GV I P AV+ + IG +T + G VI G V IG + Sbjct: 20 VAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDV 79 Query: 172 SIGAGSSIYS------SLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVII 221 +IG G+ ++ LIG + G IG+ A + K + G +++ Sbjct: 80 TIGHGAVVHGCTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIPGGSLVV 135 >gnl|CDD|100039 cd00710, LbH_gamma_CA, Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.. Length = 167 Score = 45.7 bits (109), Expect = 2e-05 Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 3/75 (4%) Query: 124 FLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSL 183 +G +V I+DGVVI A+ V IG+ + G+++ IG NC IG S ++++ Sbjct: 44 IIGANVNIQDGVVI--HALEGYSVWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVFNAK 101 Query: 184 IG-NSVILHSGVRIG 197 +G N VI H+ V G Sbjct: 102 VGDNCVIGHNAVVDG 116 Score = 42.6 bits (101), Expect = 2e-04 Identities = 45/140 (32%), Positives = 63/140 (45%), Gaps = 22/140 (15%) Query: 137 IAPMAVVYPGVEIGRKTYVGPGSVI----GAGVRIGRNCSIGAGSSIYSSLIGNSVILHS 192 + P AVV V IG +VGPG+ I G + IG N +I G I++ + Sbjct: 11 VHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHA-------LEGY 63 Query: 193 GVRIGNDGFGYARGVSDIHK-IVHIGRVIIQDKVEIGANSAIDRGTI-DDTIIGENTKID 250 V IG + VS H IVH G I D IG S + + D+ +IG N +D Sbjct: 64 SVWIGKN-------VSIAHGAIVH-GPAYIGDNCFIGFRSVVFNAKVGDNCVIGHNAVVD 115 Query: 251 NQVQIGHNVHIGCGCIIVSQ 270 V+I ++ G +I SQ Sbjct: 116 G-VEIPPGRYVPAGAVITSQ 134 Score = 41.8 bits (99), Expect = 2e-04 Identities = 34/96 (35%), Positives = 43/96 (44%), Gaps = 14/96 (14%) Query: 216 IGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAG 275 IG VII D V +G ++I R II IG NV+I G +I + G Sbjct: 18 IGDVIIGDNVFVGPGASI-RADEGTPII-----------IGANVNIQDGVVIHALEG--Y 63 Query: 276 STYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLK 311 S +IG NV I + G IGDN I +S V Sbjct: 64 SVWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVFN 99 >gnl|CDD|32354 COG2171, DapD, Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]. Length = 271 Score = 45.3 bits (107), Expect = 3e-05 Identities = 36/144 (25%), Positives = 51/144 (35%), Gaps = 32/144 (22%) Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSS 178 I P A + I G V+ P + V G G T V + +G+ ++G+N IG G+S Sbjct: 111 IVPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGAS 170 Query: 179 IYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTI 238 I L VII D IGANS + G Sbjct: 171 IGGVLEPLQA----------------------------NPVIIGDNCLIGANSEVVEG-- 200 Query: 239 DDTIIGENTKIDNQVQIGHNVHIG 262 I+G+ + V I + I Sbjct: 201 --VIVGDGCVVAAGVFITQDTKIY 222 Score = 44.5 bits (105), Expect = 5e-05 Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 10/105 (9%) Query: 220 IIQDKVEIGANSAIDRGTIDD--TIIGENTKID------NQVQIGHNVHIGCGCII--VS 269 I++ I + + + + GE T +D + Q+G N HIG G I V Sbjct: 116 IVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVL 175 Query: 270 QVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIP 314 + A IGDN LIG + + +GD +A+ + +D Sbjct: 176 EPLQANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFITQDTK 220 Score = 36.4 bits (84), Expect = 0.013 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 8/82 (9%) Query: 243 IGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLK------ 296 I + T + + + G G ++ + + +G N IGG I G L+ Sbjct: 123 IAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANP 182 Query: 297 --IGDNVQIASKSGVLKDIPAG 316 IGDN I + S V++ + G Sbjct: 183 VIIGDNCLIGANSEVVEGVIVG 204 Score = 29.5 bits (66), Expect = 1.4 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 7/89 (7%) Query: 116 EGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAG----VRIGRNC 171 E ++ A GE ++ + A V IG G V+ V IG NC Sbjct: 132 ESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGG--ASIGGVLEPLQANPVIIGDNC 189 Query: 172 SIGAGSSIYSSLI-GNSVILHSGVRIGND 199 IGA S + +I G+ ++ +GV I D Sbjct: 190 LIGANSEVVEGVIVGDGCVVAAGVFITQD 218 >gnl|CDD|100040 cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.. Length = 145 Score = 44.8 bits (107), Expect = 3e-05 Identities = 41/183 (22%), Positives = 56/183 (30%), Gaps = 62/183 (33%) Query: 147 VEIGRKTYVGPG--SVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYA 204 + +G +Y V G + IG+ CSI G V+IG G Sbjct: 2 ISVGDYSYGSGPDCDVGGDKLSIGKFCSIAPG-----------------VKIGLGG---- 40 Query: 205 RGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCG 264 H + D +K D V IG++V IG G Sbjct: 41 -----NHPTDWV--------STYPFYIFGGEWEDDAKFDDWPSKGD--VIIGNDVWIGHG 85 Query: 265 CIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIPAGQQYGGMPA 324 I+ V IGD IA+ + V KD+P GG PA Sbjct: 86 ATILPGV------------------------TIGDGAVIAAGAVVTKDVPPYAIVGGNPA 121 Query: 325 RPI 327 + I Sbjct: 122 KVI 124 Score = 32.5 bits (75), Expect = 0.19 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 6/37 (16%) Query: 128 DVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAG 164 DV I + V I A + PGV IG G+VI AG Sbjct: 73 DVIIGNDVWIGHGATILPGVTIGD------GAVIAAG 103 >gnl|CDD|100061 cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.. Length = 79 Score = 44.9 bits (107), Expect = 4e-05 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 122 QAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGR 169 +++ +DV IEDG I ++V G IG+ + PGS+I GV IG Sbjct: 33 NSYIWDDVTIEDGCTIH-HSIVADGAVIGKGCTIPPGSLISFGVVIGD 79 Score = 40.3 bits (95), Expect = 7e-04 Identities = 28/97 (28%), Positives = 37/97 (38%), Gaps = 21/97 (21%) Query: 167 IGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVE 226 IGR SIG G++I +S+IG +IG + V I I D V Sbjct: 2 IGRGTSIGEGTTIKNSVIGR------NCKIGKN--------------VVIDNSYIWDDVT 41 Query: 227 IGANSAIDRGTI-DDTIIGENTKIDNQVQIGHNVHIG 262 I I + D +IG+ I I V IG Sbjct: 42 IEDGCTIHHSIVADGAVIGKGCTIPPGSLISFGVVIG 78 Score = 37.2 bits (87), Expect = 0.007 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 16/65 (24%) Query: 149 IGRKTYVGPG-----SVIGAGVRIGRNCS-----------IGAGSSIYSSLIGNSVILHS 192 IGR T +G G SVIG +IG+N I G +I+ S++ + ++ Sbjct: 2 IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIGK 61 Query: 193 GVRIG 197 G I Sbjct: 62 GCTIP 66 >gnl|CDD|100038 cd00208, LbetaH, Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.. Length = 78 Score = 44.2 bits (105), Expect = 5e-05 Identities = 28/77 (36%), Positives = 33/77 (42%), Gaps = 8/77 (10%) Query: 242 IIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTY--------IGDNVLIGGQCGIAG 293 IGE KI + I V IG I I +T IGDNV IG I G Sbjct: 2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHG 61 Query: 294 YLKIGDNVQIASKSGVL 310 +KIGDN I + + V Sbjct: 62 GVKIGDNAVIGAGAVVT 78 Score = 39.9 bits (94), Expect = 0.001 Identities = 30/110 (27%), Positives = 39/110 (35%), Gaps = 32/110 (29%) Query: 147 VEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARG 206 V IG + P +VI V IG N +IG G+ I ++ N Sbjct: 1 VFIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPN-------------------- 40 Query: 207 VSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIG 256 II D VEIGAN+ I G IG+N I + Sbjct: 41 --------EKNPTIIGDNVEIGANAVIHGG----VKIGDNAVIGAGAVVT 78 Score = 37.6 bits (88), Expect = 0.006 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Query: 119 ISPQAFLGEDVKIEDGVVI--APMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAG 176 I +G++V I G VI A IG +G +VI GV+IG N IGAG Sbjct: 15 IRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHGGVKIGDNAVIGAG 74 Query: 177 SSI 179 + + Sbjct: 75 AVV 77 Score = 35.7 bits (83), Expect = 0.018 Identities = 28/78 (35%), Positives = 35/78 (44%), Gaps = 13/78 (16%) Query: 129 VKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGA--------GVRIGRNCSIGAGSSIY 180 V I +GV I P AV+ V IG +GPG+VIGA IG N IGA Sbjct: 1 VFIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGAN---- 56 Query: 181 SSLIGNSVILHSGVRIGN 198 ++I V + IG Sbjct: 57 -AVIHGGVKIGDNAVIGA 73 Score = 35.7 bits (83), Expect = 0.018 Identities = 18/71 (25%), Positives = 23/71 (32%), Gaps = 8/71 (11%) Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIG--------RKTYVGPGSVIGAGVRIGRN 170 I + I VVI + PG IG T +G IGA I Sbjct: 3 IGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHGG 62 Query: 171 CSIGAGSSIYS 181 IG + I + Sbjct: 63 VKIGDNAVIGA 73 Score = 31.1 bits (71), Expect = 0.52 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 8/66 (12%) Query: 259 VHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLK--------IGDNVQIASKSGVL 310 V IG G I + I G IGDNV IG I IGDNV+I + + + Sbjct: 1 VFIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIH 60 Query: 311 KDIPAG 316 + G Sbjct: 61 GGVKIG 66 Score = 29.5 bits (67), Expect = 1.2 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 4/61 (6%) Query: 211 HKIVHIGRVIIQDKVEIGANSAIDRGTID----DTIIGENTKIDNQVQIGHNVHIGCGCI 266 K V G V+I D V IG + I T TIIG+N +I I V IG + Sbjct: 11 PKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHGGVKIGDNAV 70 Query: 267 I 267 I Sbjct: 71 I 71 Score = 28.0 bits (63), Expect = 4.6 Identities = 13/35 (37%), Positives = 19/35 (54%) Query: 128 DVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIG 162 I D V I AV++ GV+IG +G G+V+ Sbjct: 44 PTIIGDNVEIGANAVIHGGVKIGDNAVIGAGAVVT 78 >gnl|CDD|100041 cd03350, LbH_THP_succinylT, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.. Length = 139 Score = 42.8 bits (101), Expect = 2e-04 Identities = 28/120 (23%), Positives = 45/120 (37%), Gaps = 28/120 (23%) Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSS 178 + P A + + I G V+ + V G + T V + +G+ +IG+N + AG+ Sbjct: 4 VPPGAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAV 63 Query: 179 IYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTI 238 I L + + VII+D V IGAN + G I Sbjct: 64 IGGVL----------------------------EPLQATPVIIEDDVFIGANCEVVEGVI 95 Score = 38.9 bits (91), Expect = 0.002 Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 10/95 (10%) Query: 220 IIQDKVEIGANSAIDRGTIDD--TIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGS- 276 II+D IG + + + + + E T +D+ +G IG + + I G Sbjct: 9 IIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVL 68 Query: 277 -------TYIGDNVLIGGQCGIAGYLKIGDNVQIA 304 I D+V IG C + + +G +A Sbjct: 69 EPLQATPVIIEDDVFIGANCEVVEGVIVGKGAVLA 103 Score = 30.8 bits (70), Expect = 0.52 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 6/45 (13%) Query: 129 VKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSI 173 V IED V I V GV VG G+V+ AGV + ++ I Sbjct: 76 VIIEDDVFIGANCEVVEGV------IVGKGAVLAAGVVLTQSTPI 114 >gnl|CDD|36536 KOG1322, KOG1322, KOG1322, GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]. Length = 371 Score = 42.1 bits (99), Expect = 2e-04 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 5/74 (6%) Query: 130 KIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGR-----NCSIGAGSSIYSSLI 184 KI V++ +A + IG +GP I GVR+ S I SS++ Sbjct: 260 KIVGNVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIV 319 Query: 185 GNSVILHSGVRIGN 198 G +V + RI Sbjct: 320 GWNVPIGIWARIDK 333 Score = 39.1 bits (91), Expect = 0.002 Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 6/94 (6%) Query: 216 IGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAG 275 +G V++ IG N +I + +IG +I++ V++ + I + I+ Sbjct: 262 VGNVLVDSIASIGENCSIGP----NVVIGPRVRIEDGVRLQDST-ILGADYYETHSEIS- 315 Query: 276 STYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGV 309 S+ +G NV IG I +G NV +A + V Sbjct: 316 SSIVGWNVPIGIWARIDKNAVLGKNVIVADEDYV 349 Score = 32.1 bits (73), Expect = 0.25 Identities = 27/132 (20%), Positives = 44/132 (33%), Gaps = 20/132 (15%) Query: 144 YPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGY 203 PG +I V + IG IG N IG I + + Sbjct: 256 LPGSKIVGNVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETH---- 311 Query: 204 ARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQ--VQIGHNVHI 261 I I+ V IG + ID+ + ++G+N + ++ V G + I Sbjct: 312 ----------SEISSSIVGWNVPIGIWARIDK----NAVLGKNVIVADEDYVNEGSGLPI 357 Query: 262 GCGCIIVSQVGI 273 G +V + I Sbjct: 358 KSGITVVLKPAI 369 Score = 30.2 bits (68), Expect = 0.96 Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 7/81 (8%) Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSS 178 + A +GE+ I VVI P + GV + T +G + I + Sbjct: 267 VDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILG-------ADYYETHSEISSSIV 319 Query: 179 IYSSLIGNSVILHSGVRIGND 199 ++ IG + +G + Sbjct: 320 GWNVPIGIWARIDKNAVLGKN 340 >gnl|CDD|100046 cd03356, LbH_G1P_AT_C_like, Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.. Length = 79 Score = 41.1 bits (97), Expect = 4e-04 Identities = 33/105 (31%), Positives = 45/105 (42%), Gaps = 27/105 (25%) Query: 160 VIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRV 219 +IG IG N I +S+IG++V + GV I N Sbjct: 1 LIGESTVIGENAIIK------NSVIGDNVRIGDGVTITNS-------------------- 34 Query: 220 IIQDKVEIGANSAIDRGTIDD-TIIGENTKIDNQVQIGHNVHIGC 263 I+ D V IGANS I I D +IGEN ++ N IG +V + Sbjct: 35 ILMDNVTIGANSVIVDSIIGDNAVIGENVRVVNLCIIGDDVVVED 79 Score = 40.3 bits (95), Expect = 9e-04 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Query: 220 IIQDKVEIGANSAIDRGTI-DDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTY 278 +I + IG N+ I I D+ IG+ I N + + NV IG +IV + Sbjct: 1 LIGESTVIGENAIIKNSVIGDNVRIGDGVTITNSI-LMDNVTIGANSVIVDSI------- 52 Query: 279 IGDNVLIGGQCGIAGYLKIGDNVQI 303 IGDN +IG + IGD+V + Sbjct: 53 IGDNAVIGENVRVVNLCIIGDDVVV 77 Score = 39.5 bits (93), Expect = 0.001 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 12/65 (18%) Query: 145 PGVEIGRKTYVGPGSVIGAGVRIG-----------RNCSIGAGSSIYSSLIGNSVILHSG 193 IG + SVIG VRIG N +IGA S I S+IG++ ++ Sbjct: 4 ESTVIGENAIIKN-SVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIGEN 62 Query: 194 VRIGN 198 VR+ N Sbjct: 63 VRVVN 67 >gnl|CDD|36675 KOG1462, KOG1462, KOG1462, Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]. Length = 433 Score = 41.1 bits (96), Expect = 5e-04 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 8/111 (7%) Query: 152 KTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIH 211 K YV +++GA +G N IG S+I S+IG++ + V++ N V + Sbjct: 322 KNYVKKVALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSIL--MDNVV-VG 378 Query: 212 KIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIG 262 V+I II +IG+ S + + IIG ++ + + G V + Sbjct: 379 DGVNIENSIIGMGAQIGSGS-----KLKNCIIGPGYVVEAKGKHGGEVLVS 424 >gnl|CDD|36673 KOG1460, KOG1460, KOG1460, GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism, Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones]. Length = 407 Score = 41.1 bits (96), Expect = 5e-04 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 5/67 (7%) Query: 126 GEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIG 185 G +I V I P A V+P +IG +G +G GVR+ R I + I Sbjct: 280 GTQAEIIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRL-RESIILDDAEIEE---- 334 Query: 186 NSVILHS 192 N+V+LHS Sbjct: 335 NAVVLHS 341 >gnl|CDD|100049 cd03359, LbH_Dynactin_5, Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.. Length = 161 Score = 40.7 bits (96), Expect = 6e-04 Identities = 44/158 (27%), Positives = 57/158 (36%), Gaps = 47/158 (29%) Query: 183 LIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGR-VIIQDKVEIGANSAIDRGTI--- 238 ++ I+ S V I RG D+ + IGR I+ + I + Sbjct: 23 VLNGKTIIQSDVII--------RG--DLATV-SIGRYCILSEGCVIRPPFKKFSKGVAFF 71 Query: 239 -----DDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAG 293 D IGEN + N QIG VHIG C+I G+ I Sbjct: 72 PLHIGDYVFIGENCVV-NAAQIGSYVHIGKNCVI-------------------GRRCI-- 109 Query: 294 YLKIGDNVQIASKSGVLKD--IPAGQQYGGMPARPIGE 329 I D V+I + V D IP G PAR IGE Sbjct: 110 ---IKDCVKILDGTVVPPDTVIPPYSVVSGRPARFIGE 144 Score = 31.0 bits (71), Expect = 0.53 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 11/67 (16%) Query: 125 LGEDVKIEDGVVIAPMAVVYPGVE------IGRKTYVGPGSV-----IGAGVRIGRNCSI 173 +G + +G VI P + IG ++G V IG+ V IG+NC I Sbjct: 45 IGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSYVHIGKNCVI 104 Query: 174 GAGSSIY 180 G I Sbjct: 105 GRRCIIK 111 Score = 27.2 bits (61), Expect = 7.0 Identities = 13/48 (27%), Positives = 19/48 (39%) Query: 123 AFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRN 170 A +G V I VI ++ V+I T V P +VI + Sbjct: 90 AQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPYSVVSGR 137 >gnl|CDD|100057 cd04652, LbH_eIF2B_gamma_C, eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.. Length = 81 Score = 37.9 bits (89), Expect = 0.004 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 4/71 (5%) Query: 242 IIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNV 301 ++GENT++ + I +V IG C I +V I I DNV I C + + IG+ Sbjct: 1 LVGENTQVGEKTSIKRSV-IGANCKIGKRVKITNCV-IMDNVTIEDGCTLENCI-IGNGA 57 Query: 302 QIASKSGVLKD 312 I K LKD Sbjct: 58 VIGEKC-KLKD 67 Score = 32.9 bits (76), Expect = 0.14 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Query: 149 IGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGN 198 +G T VG + I V IG NC IG I + +I ++V + G + N Sbjct: 2 VGENTQVGEKTSIKRSV-IGANCKIGKRVKITNCVIMDNVTIEDGCTLEN 50 >gnl|CDD|100058 cd04745, LbH_paaY_like, paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.. Length = 155 Score = 35.4 bits (82), Expect = 0.023 Identities = 46/184 (25%), Positives = 66/184 (35%), Gaps = 54/184 (29%) Query: 154 YVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKI 213 +V P +V+ V IG+NC IG +S+ RG Sbjct: 8 FVHPTAVLIGDVIIGKNCYIGPHASL-------------------------RG------- 35 Query: 214 VHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGI 273 GR++I+D + N I DT++ EN HIG G I + Sbjct: 36 -DFGRIVIRDGANVQDNCVIHGFPGQDTVLEENG------------HIGHGAI------L 76 Query: 274 AGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLK--DIPAGQQYGGMPARPIGEYL 331 G T IG N L+G + IG+ + + + V IP G PA+ I E Sbjct: 77 HGCT-IGRNALVGMNAVVMDGAVIGEESIVGAMAFVKAGTVIPPRSLIAGSPAKVIRELS 135 Query: 332 RHMV 335 V Sbjct: 136 DEEV 139 Score = 33.1 bits (76), Expect = 0.11 Identities = 30/109 (27%), Positives = 43/109 (39%), Gaps = 28/109 (25%) Query: 139 PMAVVYPGVEIGRKTYVGPGS---------VIGAGVRIGRNCSIGAGSSIYSSL-----I 184 P AV+ V IG+ Y+GP + VI G + NC I + L I Sbjct: 11 PTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHI 70 Query: 185 GNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAI 233 G+ ILH G IG + +V + V++ D IG S + Sbjct: 71 GHGAILH-GCTIGR------------NALVGMNAVVM-DGAVIGEESIV 105 Score = 30.4 bits (69), Expect = 0.83 Identities = 27/103 (26%), Positives = 38/103 (36%), Gaps = 28/103 (27%) Query: 113 SSFEGGISPQAFLGEDVKIEDGVVIAPMA---------VVYPGVEI----------GRKT 153 SSF + P A L DV I I P A V+ G + G+ T Sbjct: 6 SSF---VHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDT 62 Query: 154 YVGPGSVIG-----AGVRIGRNCSIGAGSSIY-SSLIGNSVIL 190 + IG G IGRN +G + + ++IG I+ Sbjct: 63 VLEENGHIGHGAILHGCTIGRNALVGMNAVVMDGAVIGEESIV 105 Score = 29.6 bits (67), Expect = 1.1 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 124 FLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGS 177 F G+D +E+ I A+++ G IGR VG +V+ G IG +GA + Sbjct: 57 FPGQDTVLEENGHIGHGAILH-GCTIGRNALVGMNAVVMDGAVIGEESIVGAMA 109 >gnl|CDD|30797 COG0448, GlgC, ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]. Length = 393 Score = 35.2 bits (81), Expect = 0.027 Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 6/83 (7%) Query: 173 IGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSA 232 S + +SL+ I+ V N RGV I K I +I VEIG + Sbjct: 288 FVNDSEVSNSLVAGGCIISGTVE--NSVLF--RGVR-IGKGSVIENSVIMPDVEIGEGAV 342 Query: 233 IDRGTID-DTIIGENTKIDNQVQ 254 + R ID + +IGE I Sbjct: 343 LRRAIIDKNVVIGEGVVIGGDKP 365 Score = 33.2 bits (76), Expect = 0.10 Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 7/114 (6%) Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVE---IGRKTYVGPGSVIGAGVRIGRNCSIGA 175 P A D ++ + +V A ++ VE + R +G GSVI V I + IG Sbjct: 282 NLPPAKFVNDSEVSNSLV-AGGCIISGTVENSVLFRGVRIGKGSVIENSV-IMPDVEIGE 339 Query: 176 GSSIYSSLIGNSVILHSGVRIGNDGFGYAR-GVSDIHKIVHIGR-VIIQDKVEI 227 G+ + ++I +V++ GV IG D R IV + + ++I+ + Sbjct: 340 GAVLRRAIIDKNVVIGEGVVIGGDKPEEDRKRFRSEEGIVVVPKGMVIKLDIME 393 >gnl|CDD|100056 cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.. Length = 104 Score = 33.2 bits (77), Expect = 0.11 Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 30/115 (26%) Query: 159 SVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGR 218 S++ G I +G ++ +S++ V + SG + + Sbjct: 13 SLVSEGCII-------SGGTVENSVLFRGVRVGSGSVVED-------------------- 45 Query: 219 VIIQDKVEIGANSAIDRGTID-DTIIGENTKI--DNQVQIGHNVHIGCGCIIVSQ 270 +I V IG N+ I R ID + +I + I D + G ++V + Sbjct: 46 SVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIGGDPEEDRARFYVTEDGIVVVGK 100 Score = 28.6 bits (65), Expect = 2.7 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 6/49 (12%) Query: 125 LGEDVKIEDGVVIAPMAVVYPGVEIGRKTY-----VGPGSVIGAGVRIG 168 L V++ G V+ +V+ P V IGR + VI GV IG Sbjct: 31 LFRGVRVGSGSVVED-SVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIG 78 Score = 28.6 bits (65), Expect = 3.0 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 8/74 (10%) Query: 235 RGTIDDTIIG-----ENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQC 289 RG + ++++ ++N V + V +G G ++ V I + IG N +I Sbjct: 7 RGEVKNSLVSEGCIISGGTVENSV-LFRGVRVGSGSVVEDSV-IMPNVGIGRNAVIRR-A 63 Query: 290 GIAGYLKIGDNVQI 303 I + I D V I Sbjct: 64 IIDKNVVIPDGVVI 77 >gnl|CDD|100055 cd04650, LbH_FBP, Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.. Length = 154 Score = 32.9 bits (75), Expect = 0.12 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 126 GEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSI 179 G +I D V I AVV+ G ++G VG G+++ G +IG + IGAG+ + Sbjct: 59 GYPTEIGDYVTIGHNAVVH-GAKVGNYVIVGMGAILLNGAKIGDHVIIGAGAVV 111 Score = 32.9 bits (75), Expect = 0.14 Identities = 31/142 (21%), Positives = 51/142 (35%), Gaps = 36/142 (25%) Query: 130 KIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGA---GVRIGRNCSIGAGSSIYSSLIGN 186 +I + P + V V IG T V +VI + IG+ ++ SI++ Sbjct: 2 RISPKAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTD---- 57 Query: 187 SVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTI-DDTIIGE 245 GY I D V IG N+ + + + I+G Sbjct: 58 --------------HGY--------------PTEIGDYVTIGHNAVVHGAKVGNYVIVGM 89 Query: 246 NTKIDNQVQIGHNVHIGCGCII 267 + N +IG +V IG G ++ Sbjct: 90 GAILLNGAKIGDHVIIGAGAVV 111 Score = 29.5 bits (66), Expect = 1.4 Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 19/120 (15%) Query: 119 ISPQAFLGE------DVKIEDGVVIAPMAVVYPGVE---IGRKTYVGPGSVI----GAGV 165 ISP+A++ DV I + + AV+ + IG+ + V I G Sbjct: 3 ISPKAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPT 62 Query: 166 RIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKV 225 IG +IG + ++ + +GN VI+ G + N + D H I+ G V+ K Sbjct: 63 EIGDYVTIGHNAVVHGAKVGNYVIVGMGAILLN-----GAKIGD-HVIIGAGAVVTPGKE 116 >gnl|CDD|100062 cd05824, LbH_M1P_guanylylT_C, Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.. Length = 80 Score = 32.9 bits (75), Expect = 0.13 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%) Query: 136 VIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYS-SLIGNSVI 189 +I P A + +IG +GP IG GVR+ R C I + S++ S + +S++ Sbjct: 1 LIDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQR-CVILSNSTVRDHSWVKSSIV 54 Score = 28.3 bits (63), Expect = 2.9 Identities = 13/33 (39%), Positives = 17/33 (51%) Query: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGR 151 I P A +G+ KI VVI P + GV + R Sbjct: 2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQR 34 >gnl|CDD|100052 cd04646, LbH_Dynactin_6, Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.. Length = 164 Score = 32.3 bits (74), Expect = 0.19 Identities = 14/38 (36%), Positives = 18/38 (47%) Query: 147 VEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLI 184 ++IG S +G V I C IGAG + SS I Sbjct: 84 LKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEI 121 Score = 27.7 bits (62), Expect = 5.3 Identities = 32/99 (32%), Positives = 43/99 (43%), Gaps = 18/99 (18%) Query: 221 IQDKVEIGANSAID-RGTID----DTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAG 275 I+ V IG + + R TI IIGEN I+ QV I + + I Sbjct: 14 IRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKD---PAEPKPMI-- 68 Query: 276 STYIGDNVL--IGGQCGIAGYLKIGDNVQIASKSGVLKD 312 IG N + +G +C LKIG+N SKS V K+ Sbjct: 69 ---IGSNNVFEVGCKCE---ALKIGNNNVFESKSFVGKN 101 >gnl|CDD|100059 cd05635, LbH_unknown, Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.. Length = 101 Score = 32.2 bits (74), Expect = 0.21 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 8/73 (10%) Query: 129 VKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSV 188 + I VI P AV+ V IG + V G+ I IG C IG + +S+ Sbjct: 12 IYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGGE-------VEDSI 64 Query: 189 ILHSGVRIGNDGF 201 I +DGF Sbjct: 65 I-EGYSNKQHDGF 76 >gnl|CDD|39245 KOG4042, KOG4042, KOG4042, Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport, Cytoskeleton]. Length = 190 Score = 30.0 bits (67), Expect = 0.89 Identities = 35/162 (21%), Positives = 61/162 (37%), Gaps = 19/162 (11%) Query: 130 KIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVI 189 E V IAP AVV +I + G V+ I IY IG + I Sbjct: 4 MTETSVKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVF-----IATAGPIY---IGENNI 55 Query: 190 LHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKI 249 + I N A SD + + IG + E+G S+ + +G+ I Sbjct: 56 IEEYAVIRNRLEPGAVWDSD-GQPMIIGT---WNVFEVGCKSSAKK-------VGDRNVI 104 Query: 250 DNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGI 291 +++ +G V + GC + ++ + + +N + G + Sbjct: 105 ESKAYVGDGVSVSSGCSVGAKCTVFSHQNLPENTSVYGATNL 146 >gnl|CDD|100054 cd04649, LbH_THP_succinylT_putative, Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.. Length = 147 Score = 27.8 bits (62), Expect = 4.5 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 9/62 (14%) Query: 143 VYPGVEIGRKTYVGPGSVI-----GAG---VRIGRNCSIGAGSSIYSSLIGNSVILHSGV 194 + GV +G+ + VG G+ I G G + IG+ C +GA S I SL G++ I+ +G+ Sbjct: 44 ISSGVIVGKGSDVGGGASIMGTLSGGGNNVISIGKRCLLGANSGIGISL-GDNCIVEAGL 102 Query: 195 RI 196 + Sbjct: 103 YV 104 >gnl|CDD|30504 COG0155, CysI, Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism]. Length = 510 Score = 27.2 bits (60), Expect = 6.5 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 5/53 (9%) Query: 241 TIIGENTKIDNQVQIGHNVHI-----GCGCIIVSQVGIAGSTYIGDNVLIGGQ 288 II + ++ + +HI GCG ++++G+ G G V +GG Sbjct: 401 RIIARLEDLLDKHGLPITLHISGCPNGCGRPHLAEIGLVGKAKGGYQVYLGGG 453 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.320 0.140 0.407 Gapped Lambda K H 0.267 0.0814 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 4,117,480 Number of extensions: 226811 Number of successful extensions: 1278 Number of sequences better than 10.0: 1 Number of HSP's gapped: 621 Number of HSP's successfully gapped: 161 Length of query: 347 Length of database: 6,263,737 Length adjustment: 95 Effective length of query: 252 Effective length of database: 4,210,882 Effective search space: 1061142264 Effective search space used: 1061142264 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 58 (26.0 bits)