HHsearch alignment for GI: 254780772 and conserved domain: COG4775
>COG4775 Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane].
Probab=100.00 E-value=4.1e-37 Score=260.17 Aligned_cols=307 Identities=21% Similarity=0.427 Sum_probs=259.5
Q ss_pred CCEEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHH---HH-CCCCC-EEEEEEE----CC-EEEEEEEEC
Q ss_conf 652685899966500798899997487898826889999999999---96-79800-3899986----99-899999936
Q gi|254780772|r 44 NTSIVRRIEIRGATNVGKEVILSRIPVVVGQSISDADLDHAVKNI---YA-MGYFS-NVKIKIV----DS-VLIIDLIER 113 (781)
Q Consensus 44 ~~~~i~~I~i~G~~~i~~~~i~~~~~~~~G~~~~~~~i~~~i~~l---~~-~g~F~-~v~~~~~----~~-~l~~~v~e~ 113 (781)
T Consensus 90 e~p~I~~v~~~Gn~~i~~~~L~~~l~~~~g~~~~~~~l~~~~~~l~e~Y~~~G~~~~~v~~~~~~~~~~~v~v~f~i~eG 169 (766)
T COG4775 90 ERPVINSVVFSGNKSIKDDALKKNLKIKPGEVLNRAKLEADVEALKEAYLSRGYYSVKVTYKVTPLPRNRVDVVFVINEG 169 (766)
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCEECCEEEEEEEECCCCEEEEEEEECCC
T ss_conf 27728789986871377589887536477873457899989999999887468304346798787799707999993799
Q ss_pred C--EEEEEEEECCCCCCHHHHHHHHHHCCCC---------CCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEC--CCC
Q ss_conf 5--3657999565436988998873005786---------37999999999999999997297001799876433--898
Q gi|254780772|r 114 K--IINHLFFSGNNNLKDDQLKMIVRSRSAA---------AYDEDTVNADVHNIKQAYASIGYLNVMVKVQHHSI--SPT 180 (781)
Q Consensus 114 p--~i~~i~~~Gn~~~~~~~l~~~~~~~~g~---------~~~~~~~~~~~~~i~~~y~~~Gy~~a~V~~~~~~~--~~~ 180 (781)
T Consensus 170 ~~~~i~~I~~~Gn~~~s~~~l~~~~~~k~~~~~~~~~~~~~y~~~~l~~D~e~lr~~Y~n~Gy~d~~v~s~~~~~~~~k~ 249 (766)
T COG4775 170 PSAKIKQINFEGNTAFSDSDLESVVQTKESNIWGWLTRLDKYDPDKLEADLETLRSFYLNRGYADFRVSSTQVSLDPDKK 249 (766)
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHEEECCCEEEEEEECCCCCCHHHHHCCHHHHHHHHHHCCEEEEEEEEEEECCCCCCC
T ss_conf 72100146870554436012233315202205888715661276663062899999997576289998641303457876
Q ss_pred CEEEEEEEECCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 42588986036632467787504431101222211100122112445666431023333457888888754232210012
Q gi|254780772|r 181 TLNITYVIEEGVKAKINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYHDRGYAAVKVSS 260 (781)
Q Consensus 181 ~v~i~~~I~EG~~~~I~~I~f~Gn~~f~~~~L~~~~~~k~~~~~~~~~~~~~~~~~l~~D~~~l~~~Y~~~GY~d~~V~~ 260 (781)
T Consensus 250 ~~~vt~~V~EG~~y~~~~i~i~g~~~~~~~el~~~~~~~~g--------~~fn~~~i~~~~~~I~~~~~~~GY~~a~V~p 321 (766)
T COG4775 250 GVTVTYTVKEGPQYKFGSVLIEGNLAGVSEELEKLLKVKPG--------KLFNRKKIEDDADKIKERYARYGYAFANVSP 321 (766)
T ss_pred CEEEEEEECCCCCEEEEEEEEECCCCCCHHHHHHHHCCCCC--------CEECHHHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 37999997448833788899975766738998776545889--------5276899888999999999865930368610
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEECCCCCCHHHHHCCCCCCCCCCCCCCC
Q ss_conf 31012455554101220222210000012333444557677775321169962112100000000000023445642011
Q gi|254780772|r 261 QVLFDKQKSGYVLIFQIDEGEIYTVGNISIQSTLQEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVRV 340 (781)
Q Consensus 261 ~~~~~~~~~~~~i~~~I~EG~~y~i~~i~i~g~~~~~~~~~l~~~~~~k~G~~~~~~~~~~~~~~i~~~y~~~GY~fa~v 340 (781)
T Consensus 322 ~~~~n~~~~tv~v~~~V~~g~~~~V~~i~i~gn~r-T~D~VIrRE~~~~eGd~fn~~~v~~~~~rL~~l----gy-F~~V 395 (766)
T COG4775 322 QPDANDENKTVDVVFRVDEGDRVYVRRIRIRGNTR-TKDYVIRREMRLKEGDVFNRKLVQRGKRRLRRL----GY-FESV 395 (766)
T ss_pred ECCCCCCCCEEEEEEEEECCCCEEEEEEEECCCCC-CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC----CC-CEEE
T ss_conf 11338888589999999758833664544527873-031776645532773223389999999999846----88-3345
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf 233223434404665541233322
Q gi|254780772|r 341 KTRINRDFAKRIVDIEYLIDQGSP 364 (781)
Q Consensus 341 ~~~~~~d~~~~~vdi~~~I~eg~~ 364 (781)
T Consensus 396 ~i~~~~~~~~~~vdvvv~VkE~~T 419 (766)
T COG4775 396 NIDTAPGSGSDQVDVVVDVKERST 419 (766)
T ss_pred EEEECCCCCCCEEEEEEEEEECCC
T ss_conf 788555899970799999875672