HHsearch alignment for GI: 254780772 and conserved domain: TIGR03303
>TIGR03303 OM_YaeT outer membrane protein assembly complex, YaeT protein. Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat.
Probab=100.00 E-value=0 Score=1187.42 Aligned_cols=729 Identities=33% Similarity=0.581 Sum_probs=673.3
Q ss_pred EEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEEECCEEEEEEEECCC
Q ss_conf 26858999665007988999974878988268899999999999679800389998699899999936536579995654
Q gi|254780772|r 46 SIVRRIEIRGATNVGKEVILSRIPVVVGQSISDADLDHAVKNIYAMGYFSNVKIKIVDSVLIIDLIERKIINHLFFSGNN 125 (781)
Q Consensus 46 ~~i~~I~i~G~~~i~~~~i~~~~~~~~G~~~~~~~i~~~i~~l~~~g~F~~v~~~~~~~~l~~~v~e~p~i~~i~~~Gn~ 125 (781)
T Consensus 1 ~~I~~I~v~G~~~i~~~~i~~~~~~~~G~~~~~~~i~~~ik~L~~tg~F~dv~v~~~~~~l~i~v~E~p~i~~i~~~G~~ 80 (741)
T TIGR03303 1 FVVKDIRVEGLQRVSAGTVLNYLPVKVGDTISDEKIDEAIKALYATGYFEDVKIEREGGVLVIKVKERPIINSIVFSGNK 80 (741)
T ss_pred CEEEEEEEECCEECCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEEEECCEEEEEEEECCC
T ss_conf 98989999997165989998636999998459999999999999679900589997299999999967639999999985
Q ss_pred CCCHHHHHHHH-HHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEEEEEECCCCEEEEEEEEECC
Q ss_conf 36988998873-00578637999999999999999997297001799876433898425889860366324677875044
Q gi|254780772|r 126 NLKDDQLKMIV-RSRSAAAYDEDTVNADVHNIKQAYASIGYLNVMVKVQHHSISPTTLNITYVIEEGVKAKINSIRFVGN 204 (781)
Q Consensus 126 ~~~~~~l~~~~-~~~~g~~~~~~~~~~~~~~i~~~y~~~Gy~~a~V~~~~~~~~~~~v~i~~~I~EG~~~~I~~I~f~Gn 204 (781)
T Consensus 81 ~~~~~~l~~~l~~lk~g~~~~~~~~~~~~~~I~~~Y~~~Gy~~~~V~~~~~~~~~~~v~v~f~I~Eg~~~~I~~I~f~Gn 160 (741)
T TIGR03303 81 EIKKEQLKKALVGIKKGEIFDRAKLEKDEKALKEFYRSRGKYNAEVEAKVTPLPRNRVDLEFNIKEGKKAKIKKINFVGN 160 (741)
T ss_pred CCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCEEEEEEEEECCCEEEEEEEEEECC
T ss_conf 58989999887455789703999999999999999996695204999999988998799999995388589999999887
Q ss_pred CCCCHHHHHHHHHCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 3110122221110012211244-566643102333345788888875423221001-23101245555410122022221
Q gi|254780772|r 205 KNYSHARLERVISIRTSGYFSF-GKTDVYSKERMSFDEEAIRAFYHDRGYAAVKVS-SQVLFDKQKSGYVLIFQIDEGEI 282 (781)
Q Consensus 205 ~~f~~~~L~~~~~~k~~~~~~~-~~~~~~~~~~l~~D~~~l~~~Y~~~GY~d~~V~-~~~~~~~~~~~~~i~~~I~EG~~ 282 (781)
T Consensus 161 ~~fs~~~L~~~~~~k~~~~~~~~~~~~~~~~~~l~~D~~~l~~fY~~~Gy~d~~v~~~~v~~~~~~~~~~i~~~I~EG~~ 240 (741)
T TIGR03303 161 KAFSDSELRDVFALKESNFLSWFTGDDKYSKQKLEADLELLRSFYLNRGYLDFKVESTQVSITPDKKGVYITYNIKEGEQ 240 (741)
T ss_pred CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEECCCCCEEEEEEEECCCCC
T ss_conf 42676898877752664120023667833999998799999999976052037983220388378863999999867881
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 00000123334445576777753211699621121000000000000234456420112332234344046655412333
Q gi|254780772|r 283 YTVGNISIQSTLQEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVRVKTRINRDFAKRIVDIEYLIDQG 362 (781)
Q Consensus 283 y~i~~i~i~g~~~~~~~~~l~~~~~~k~G~~~~~~~~~~~~~~i~~~y~~~GY~fa~v~~~~~~d~~~~~vdi~~~I~eg 362 (781)
T Consensus 241 Y~i~~i~~~Gn~~-~~~~~l~~~~~~~~g~~y~~~~i~~~~~~I~~~y~~~Gy~fa~v~~~~~~~~~~~~v~l~~~I~eg 319 (741)
T TIGR03303 241 YKFGEVNLEGDLI-GPDEELKKLVKIKKGEVFNREKVTKIVKAIKDLLGDKGYAFANVNPRPQINDENKTVDLTFKVDPG 319 (741)
T ss_pred EEEEEEEEECCCC-CCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCEEEEEEEEECC
T ss_conf 5667999725777-898999976544688651588999999999999985697438998889970578689899999528
Q ss_pred CCCEEECCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22011003333432003321001001000000012344456667765101234453325443565431023322112211
Q gi|254780772|r 363 SPLYVKRIEIEGNDQSYDSVIRRELELSEGDPINYSMIERAKRRIMATGYFSEVNISQLPANDVSDYVILRVSVKQLSAG 442 (781)
Q Consensus 363 ~~~~i~~I~I~GN~~T~d~VIrrel~~~~Gd~~~~~~i~~s~~~L~~lg~F~~V~i~~~~~~~~~~~vdl~i~v~E~~tg 442 (781)
T Consensus 320 ~~~~i~~I~I~GN~~T~d~VIrRel~~~~Gd~f~~~~i~~s~~~L~~lg~F~~V~i~~~~~~-~~~~vdl~v~V~Ek~tg 398 (741)
T TIGR03303 320 KRVYVRRINISGNTRTRDEVIRRELRQLEGDWYNLSKIKRSKRRLERLGYFEEVNIETVPVG-SPDQVDLNVNVKEQPTG 398 (741)
T ss_pred CEEEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCC-CCCEEEEEEEEEEECCC
T ss_conf 71899999998874155375010002488653588999999999986688233101214689-98717899999980277
Q ss_pred CCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCC-----CCC
Q ss_conf 111111122332110000011123332344220037874112211113454112357775431001111333-----333
Q gi|254780772|r 443 SVGIATNYEVDKGMGVEGHIDDNNFFGQGYRARLAAGFGRHAVQNYTFSVEDPYFLGSPISAGFDLQKTHLE-----DGS 517 (781)
Q Consensus 443 ~~~~g~gys~~~g~~~~~~~~~~Nl~G~G~~l~l~~~~~~~~~~~~~~s~~~P~~~~~~~s~~~~~~~~~~~-----~~~ 517 (781)
T Consensus 399 ~~~~g~Gyss~~g~~~~~~~~~~N~~G~G~~l~l~~~~s~~~-~~~~lsf~~P~~~~~~~sl~~~~~~~~~~~~~~~~~~ 477 (741)
T TIGR03303 399 SISFGVGYGSSSGLIFNASISERNFLGTGNRLSLSANKSSLS-QSYSLSFTDPYFTDDGVSLGFSIYYSETDRNYKNFSD 477 (741)
T ss_pred EEEEEEEECCCCCEEEEEEEEEECCCCCCCEEEEEEEECCCE-EEEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCC
T ss_conf 899996431468749999875431136660999999974451-9999999886025899507899999872354445466
Q ss_pred CCCCCCCCEEEEEEECCCCEEEEECCCEEEEEEECCCCCCCCCHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCCCEE
Q ss_conf 43233320245542025430235404125776401467544201112210158502467884321554201100246515
Q gi|254780772|r 518 LDINDESAAVRMIVPITESISTSFKYDLRFLQYGAISEKEKIPSIYTTLIEHGKFSSHSISQSIIYNTLDNPIVPRKGML 597 (781)
Q Consensus 518 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~dtrD~~~~Pt~G~~ 597 (781)
T Consensus 478 y~~~~~G~~~~lg~~l~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~dtrD~~~~Pt~G~~ 556 (741)
T TIGR03303 478 YKTKTYGGSINLGYPITEYLRVSLGYGYEQNKIKDSSDSDS-SYSKFIKEQGGKFIDSSLSYGWSYDTRDSGYFPTSGSI 556 (741)
T ss_pred CCEEEEEEEEEEEEECCCCEEEEEEEEEEEEEEECCCCCCH-HHHHHHHHCCCCEEEEEEEEEEEEECCCCCCCCCCCEE
T ss_conf 62178879999978825656999999999999871688743-56799986189627899999999963677778986408
Q ss_pred EEEEECCCCCCCCCEEEEEEEEEEEEEEECCCE--EEEEEEEEEEEEEECCCCCCCCHHEEEECCCCCCCCCCCCCCCCC
Q ss_conf 654202456555420366663004799935880--999999997898516997412301275078971402126861550
Q gi|254780772|r 598 ISSSYDYAGFGGDSQYHRIGSRASYFYLLSDDS--DIVGSLRFGYGCVIPSNKNLQLFDQFSVSSNYYLRGFAYKGIGPR 675 (781)
Q Consensus 598 ~~~~~~~a~~g~d~~f~k~~~~~~~y~~l~~~~--~l~~~~~~g~~~~~~~~~~lp~~erF~lGG~~svRGy~~~~iGP~ 675 (781)
T Consensus 557 ~~~~~~~a~~ggd~~f~K~~~~~~~y~~l~~~~~~vl~~~~~~G~~~~~~-~~~~p~~erF~lGG~~slRGf~~~~iGP~ 635 (741)
T TIGR03303 557 QRLSQEFAGPGGDLKYYKSTYDSEYYIPLSKEDDWVLSLKGRLGYGNGYG-GKDLPFYERFYAGGIGSVRGFESNSIGPR 635 (741)
T ss_pred EEEEEEEECCCCCCEEEEEEEEEEEEEECCCCCCEEEEEEEEEEEEECCC-CCCCCHHHEEECCCCCCCCCCCCCCCCCC
T ss_conf 99998984467651037899999999996667767999999998875378-88688777388589980468678992887
Q ss_pred C--CCCCCCCCEEEEEEEEEEEEECCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCC
Q ss_conf 3--79972221478999999996145656545379999997677415666677544456766424799999997557001
Q gi|254780772|r 676 V--DKKYAIGGKIYSSASAAVSFPMPLVPERAGLRGAFFVDSATLYANHVALGADKLEGNDSFWRVSTGVEIMWNSPLGM 753 (781)
Q Consensus 676 ~--~~~~~~GG~~~~~~s~E~r~pl~~~~~~~~l~~~~F~D~G~v~~~~~~~~~~~~~~~~~~~r~s~G~Glr~~tP~Gp 753 (781)
T Consensus 636 d~~~~~~~~GG~~~~~~~~E~r~Pl~~~~~~~~l~~~~F~D~Gnv~~~~~~~~~~--~~~~~~~r~s~G~Glr~~tPiGP 713 (741)
T TIGR03303 636 DINDSGDSIGGNAYATGNVELIFPLPFLPEDNGLRGSVFFDAGNVWGTDQDKAGD--YSDDSSLRASVGVGLRWISPMGP 713 (741)
T ss_pred CCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCCCCCC--CCCCCCEEEEEEEEEEEECCCCC
T ss_conf 4578887546689999999999425888866618999999815635777776666--47868646899999999877216
Q ss_pred EEEEEEEECCCCCCCEEEEEEEEEEECC
Q ss_conf 5899887226778760258999641059
Q gi|254780772|r 754 MGVYYGIPLRHREGDKIQQFGFRIGNRM 781 (781)
Q Consensus 754 irld~a~pl~~~~~D~~~~f~FsiG~~f 781 (781)
T Consensus 714 lrld~a~pl~~~~~d~~~~f~F~iG~~F 741 (741)
T TIGR03303 714 LRFSYAKPLKKKKGDKTQSFQFNIGTTF 741 (741)
T ss_pred EEEEEEECCCCCCCCCEEEEEEECCCCC
T ss_conf 8999997678888986118999585659