HHsearch alignment for GI: 254780772 and conserved domain: TIGR03303
>TIGR03303 OM_YaeT outer membrane protein assembly complex, YaeT protein. Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat.
Probab=100.00 E-value=3.4e-44 Score=306.59 Aligned_cols=308 Identities=22% Similarity=0.384 Sum_probs=261.2
Q ss_pred CCCEEEEEEEEECCCCCCHHHHHHHC-CCCCCCCCCHHHHHHHHHHH---HH-CCCCC-EEEEEEE---CC--EEEEEEE
Q ss_conf 46526858999665007988999974-87898826889999999999---96-79800-3899986---99--8999999
Q gi|254780772|r 43 SNTSIVRRIEIRGATNVGKEVILSRI-PVVVGQSISDADLDHAVKNI---YA-MGYFS-NVKIKIV---DS--VLIIDLI 111 (781)
Q Consensus 43 ~~~~~i~~I~i~G~~~i~~~~i~~~~-~~~~G~~~~~~~i~~~i~~l---~~-~g~F~-~v~~~~~---~~--~l~~~v~ 111 (781)
T Consensus 66 ~E~p~i~~i~~~G~~~~~~~~l~~~l~~lk~g~~~~~~~~~~~~~~I~~~Y~~~Gy~~~~V~~~~~~~~~~~v~v~f~I~ 145 (741)
T TIGR03303 66 KERPIINSIVFSGNKEIKKEQLKKALVGIKKGEIFDRAKLEKDEKALKEFYRSRGKYNAEVEAKVTPLPRNRVDLEFNIK 145 (741)
T ss_pred EECCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCEEEEEEEEE
T ss_conf 96763999999998558989999887455789703999999999999999996695204999999988998799999995
Q ss_pred ECC--EEEEEEEECCCCCCHHHHHHHHHHCCC---------CCCCHHHHHHHHHHHHHHHHHCCCCEEEEEE-EEEE-CC
Q ss_conf 365--365799956543698899887300578---------6379999999999999999972970017998-7643-38
Q gi|254780772|r 112 ERK--IINHLFFSGNNNLKDDQLKMIVRSRSA---------AAYDEDTVNADVHNIKQAYASIGYLNVMVKV-QHHS-IS 178 (781)
Q Consensus 112 e~p--~i~~i~~~Gn~~~~~~~l~~~~~~~~g---------~~~~~~~~~~~~~~i~~~y~~~Gy~~a~V~~-~~~~-~~ 178 (781)
T Consensus 146 Eg~~~~I~~I~f~Gn~~fs~~~L~~~~~~k~~~~~~~~~~~~~~~~~~l~~D~~~l~~fY~~~Gy~d~~v~~~~v~~~~~ 225 (741)
T TIGR03303 146 EGKKAKIKKINFVGNKAFSDSELRDVFALKESNFLSWFTGDDKYSKQKLEADLELLRSFYLNRGYLDFKVESTQVSITPD 225 (741)
T ss_pred CCCEEEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEECCC
T ss_conf 38858999999988742676898877752664120023667833999998799999999976052037983220388378
Q ss_pred CCCEEEEEEEECCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98425889860366324677875044311012222111001221124456664310233334578888887542322100
Q gi|254780772|r 179 PTTLNITYVIEEGVKAKINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYHDRGYAAVKV 258 (781)
Q Consensus 179 ~~~v~i~~~I~EG~~~~I~~I~f~Gn~~f~~~~L~~~~~~k~~~~~~~~~~~~~~~~~l~~D~~~l~~~Y~~~GY~d~~V 258 (781)
T Consensus 226 ~~~~~i~~~I~EG~~Y~i~~i~~~Gn~~~~~~~l~~~~~~~~--------g~~y~~~~i~~~~~~I~~~y~~~Gy~fa~v 297 (741)
T TIGR03303 226 KKGVYITYNIKEGEQYKFGEVNLEGDLIGPDEELKKLVKIKK--------GEVFNREKVTKIVKAIKDLLGDKGYAFANV 297 (741)
T ss_pred CCEEEEEEEECCCCCEEEEEEEEECCCCCCHHHHHHHHCCCC--------CCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 863999999867881566799972577789899997654468--------865158899999999999998569743899
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEECCCCCCHHHHHCCCCCCCCCCCCC
Q ss_conf 12310124555541012202222100000123334445576777753211699621121000000000000234456420
Q gi|254780772|r 259 SSQVLFDKQKSGYVLIFQIDEGEIYTVGNISIQSTLQEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFV 338 (781)
Q Consensus 259 ~~~~~~~~~~~~~~i~~~I~EG~~y~i~~i~i~g~~~~~~~~~l~~~~~~k~G~~~~~~~~~~~~~~i~~~y~~~GY~fa 338 (781)
T Consensus 298 ~~~~~~~~~~~~v~l~~~I~eg~~~~i~~I~I~GN~~-T~d~VIrRel~~~~Gd~f~~~~i~~s~~~L~~l----g~-F~ 371 (741)
T TIGR03303 298 NPRPQINDENKTVDLTFKVDPGKRVYVRRINISGNTR-TRDEVIRRELRQLEGDWYNLSKIKRSKRRLERL----GY-FE 371 (741)
T ss_pred EEEEEEECCCCEEEEEEEEECCCEEEEEEEEEECCCC-CCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHC----CC-CE
T ss_conf 8889970578689899999528718999999988741-553750100024886535889999999999866----88-23
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf 11233223434404665541233322
Q gi|254780772|r 339 RVKTRINRDFAKRIVDIEYLIDQGSP 364 (781)
Q Consensus 339 ~v~~~~~~d~~~~~vdi~~~I~eg~~ 364 (781)
T Consensus 372 ~V~i~~~~~~~~~~vdl~v~V~Ek~t 397 (741)
T TIGR03303 372 EVNIETVPVGSPDQVDLNVNVKEQPT 397 (741)
T ss_pred EEEEEECCCCCCCEEEEEEEEEEECC
T ss_conf 31012146899871789999998027