HHsearch alignment for GI: 254780772 and conserved domain: TIGR03303

>TIGR03303 OM_YaeT outer membrane protein assembly complex, YaeT protein. Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat.
Probab=100.00  E-value=3.4e-44  Score=306.59  Aligned_cols=308  Identities=22%  Similarity=0.384  Sum_probs=261.2

Q ss_pred             CCCEEEEEEEEECCCCCCHHHHHHHC-CCCCCCCCCHHHHHHHHHHH---HH-CCCCC-EEEEEEE---CC--EEEEEEE
Q ss_conf             46526858999665007988999974-87898826889999999999---96-79800-3899986---99--8999999
Q gi|254780772|r   43 SNTSIVRRIEIRGATNVGKEVILSRI-PVVVGQSISDADLDHAVKNI---YA-MGYFS-NVKIKIV---DS--VLIIDLI  111 (781)
Q Consensus        43 ~~~~~i~~I~i~G~~~i~~~~i~~~~-~~~~G~~~~~~~i~~~i~~l---~~-~g~F~-~v~~~~~---~~--~l~~~v~  111 (781)
T Consensus        66 ~E~p~i~~i~~~G~~~~~~~~l~~~l~~lk~g~~~~~~~~~~~~~~I~~~Y~~~Gy~~~~V~~~~~~~~~~~v~v~f~I~  145 (741)
T TIGR03303        66 KERPIINSIVFSGNKEIKKEQLKKALVGIKKGEIFDRAKLEKDEKALKEFYRSRGKYNAEVEAKVTPLPRNRVDLEFNIK  145 (741)
T ss_pred             EECCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCEEEEEEEEE
T ss_conf             96763999999998558989999887455789703999999999999999996695204999999988998799999995


Q ss_pred             ECC--EEEEEEEECCCCCCHHHHHHHHHHCCC---------CCCCHHHHHHHHHHHHHHHHHCCCCEEEEEE-EEEE-CC
Q ss_conf             365--365799956543698899887300578---------6379999999999999999972970017998-7643-38
Q gi|254780772|r  112 ERK--IINHLFFSGNNNLKDDQLKMIVRSRSA---------AAYDEDTVNADVHNIKQAYASIGYLNVMVKV-QHHS-IS  178 (781)
Q Consensus       112 e~p--~i~~i~~~Gn~~~~~~~l~~~~~~~~g---------~~~~~~~~~~~~~~i~~~y~~~Gy~~a~V~~-~~~~-~~  178 (781)
T Consensus       146 Eg~~~~I~~I~f~Gn~~fs~~~L~~~~~~k~~~~~~~~~~~~~~~~~~l~~D~~~l~~fY~~~Gy~d~~v~~~~v~~~~~  225 (741)
T TIGR03303       146 EGKKAKIKKINFVGNKAFSDSELRDVFALKESNFLSWFTGDDKYSKQKLEADLELLRSFYLNRGYLDFKVESTQVSITPD  225 (741)
T ss_pred             CCCEEEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEECCC
T ss_conf             38858999999988742676898877752664120023667833999998799999999976052037983220388378


Q ss_pred             CCCEEEEEEEECCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             98425889860366324677875044311012222111001221124456664310233334578888887542322100
Q gi|254780772|r  179 PTTLNITYVIEEGVKAKINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYHDRGYAAVKV  258 (781)
Q Consensus       179 ~~~v~i~~~I~EG~~~~I~~I~f~Gn~~f~~~~L~~~~~~k~~~~~~~~~~~~~~~~~l~~D~~~l~~~Y~~~GY~d~~V  258 (781)
T Consensus       226 ~~~~~i~~~I~EG~~Y~i~~i~~~Gn~~~~~~~l~~~~~~~~--------g~~y~~~~i~~~~~~I~~~y~~~Gy~fa~v  297 (741)
T TIGR03303       226 KKGVYITYNIKEGEQYKFGEVNLEGDLIGPDEELKKLVKIKK--------GEVFNREKVTKIVKAIKDLLGDKGYAFANV  297 (741)
T ss_pred             CCEEEEEEEECCCCCEEEEEEEEECCCCCCHHHHHHHHCCCC--------CCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             863999999867881566799972577789899997654468--------865158899999999999998569743899


Q ss_pred             CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEECCCCCCHHHHHCCCCCCCCCCCCC
Q ss_conf             12310124555541012202222100000123334445576777753211699621121000000000000234456420
Q gi|254780772|r  259 SSQVLFDKQKSGYVLIFQIDEGEIYTVGNISIQSTLQEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFV  338 (781)
Q Consensus       259 ~~~~~~~~~~~~~~i~~~I~EG~~y~i~~i~i~g~~~~~~~~~l~~~~~~k~G~~~~~~~~~~~~~~i~~~y~~~GY~fa  338 (781)
T Consensus       298 ~~~~~~~~~~~~v~l~~~I~eg~~~~i~~I~I~GN~~-T~d~VIrRel~~~~Gd~f~~~~i~~s~~~L~~l----g~-F~  371 (741)
T TIGR03303       298 NPRPQINDENKTVDLTFKVDPGKRVYVRRINISGNTR-TRDEVIRRELRQLEGDWYNLSKIKRSKRRLERL----GY-FE  371 (741)
T ss_pred             EEEEEEECCCCEEEEEEEEECCCEEEEEEEEEECCCC-CCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHC----CC-CE
T ss_conf             8889970578689899999528718999999988741-553750100024886535889999999999866----88-23


Q ss_pred             CCCCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf             11233223434404665541233322
Q gi|254780772|r  339 RVKTRINRDFAKRIVDIEYLIDQGSP  364 (781)
Q Consensus       339 ~v~~~~~~d~~~~~vdi~~~I~eg~~  364 (781)
T Consensus       372 ~V~i~~~~~~~~~~vdl~v~V~Ek~t  397 (741)
T TIGR03303       372 EVNIETVPVGSPDQVDLNVNVKEQPT  397 (741)
T ss_pred             EEEEEECCCCCCCEEEEEEEEEEECC
T ss_conf             31012146899871789999998027