HHsearch alignment for GI: 254780772 and conserved domain: pfam07244
>pfam07244 Surf_Ag_VNR Surface antigen variable number repeat. This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.
Probab=98.78 E-value=3.6e-09 Score=77.26 Aligned_cols=77 Identities=22% Similarity=0.513 Sum_probs=40.5
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCCCEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 0000123334445576777753211699621121000000000000234456420112332234344046655412333
Q gi|254780772|r 284 TVGNISIQSTLQEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVRVKTRINRDFAKRIVDIEYLIDQG 362 (781)
Q Consensus 284 ~i~~i~i~g~~~~~~~~~l~~~~~~k~G~~~~~~~~~~~~~~i~~~y~~~GY~fa~v~~~~~~d~~~~~vdi~~~I~eg 362 (781)
T Consensus 2 ~i~~I~~~Gn~~~~~~~~l~~~~~~~~G~~~~~~~i~~~~~~l~~~y~~~Gy~~~~V~~~~~~~--~~~v~l~~~V~Eg 78 (78)
T pfam07244 2 KIKDINIEGNLKRTKDEVLRRELKLKEGDVFNREKLEEDIERLYDYYGALGYAFADVKVEPEPD--PKTVDLTFNVDEG 78 (78)
T ss_pred EEEEEEEEECCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECC--CCEEEEEEEEECC
T ss_conf 7979999948866899999998635887631699999799999999986797654433177138--9989999998269