HHsearch alignment for GI: 254780772 and conserved domain: pfam08479
>pfam08479 POTRA_2 POTRA domain, ShlB-type. The POTRA domain (for polypeptide-transport-associated domain) is found towards the N-terminus of ShlB family proteins (pfam03865). ShlB is important in the secretion and activation of the haemolysin ShlA. It has been postulated that the POTRA domain has a chaperone-like function over ShlA; it may fold back into the C-terminal beta-barrel channel.
Probab=97.71 E-value=1.8e-05 Score=53.12 Aligned_cols=75 Identities=23% Similarity=0.268 Sum_probs=42.4
Q ss_pred EEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEE
Q ss_conf 46778750443110122221110012211244566643102333345788888875423221001231012455554101
Q gi|254780772|r 195 KINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYHDRGYAAVKVSSQVLFDKQKSGYVLI 274 (781)
Q Consensus 195 ~I~~I~f~Gn~~f~~~~L~~~~~~k~~~~~~~~~~~~~~~~~l~~D~~~l~~~Y~~~GY~d~~V~~~~~~~~~~~~~~i~ 274 (781)
T Consensus 2 ~v~~i~~~G~~~~~~~~l~~~~~~~~--------g~~l~~~~L~~~~~~i~~~Y~~~GY~~srv~lP~---Q~i~~G~l~ 70 (76)
T pfam08479 2 PIKGIELEGNTLLPPADLAALLQPYL--------GRCLGLADLNQLAKALTNAYIERGYVTSRVYLPP---QDLSDGVLR 70 (76)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCC---CCCCCCEEE
T ss_conf 07899998982579999999878750--------9836999999999999999998898799998178---506798899
Q ss_pred EEECCC
Q ss_conf 220222
Q gi|254780772|r 275 FQIDEG 280 (781)
Q Consensus 275 ~~I~EG 280 (781)
T Consensus 71 i~VvEG 76 (76)
T pfam08479 71 LTVLEG 76 (76)
T ss_pred EEEECC
T ss_conf 999688