HHsearch alignment of GI: 254780772 and MMDB domain: 2qdz_A_1-45_210-554
>2qdz_A (A:1-45,A:210-554) TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis}
Probab=100.00 E-value=1.2e-36 Score=256.80 Aligned_cols=316 Identities=13% Similarity=0.083 Sum_probs=228.1
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEECC------CCEEEEEEEECCCCCCCCCCCCCCCCCC-
Q ss_conf 211111111122332110000011123332344220037874112------2111134541123577754310011113-
Q gi|254780772|r 440 SAGSVGIATNYEVDKGMGVEGHIDDNNFFGQGYRARLAAGFGRHA------VQNYTFSVEDPYFLGSPISAGFDLQKTH- 512 (781)
Q Consensus 440 ~tg~~~~g~gys~~~g~~~~~~~~~~Nl~G~G~~l~l~~~~~~~~------~~~~~~s~~~P~~~~~~~s~~~~~~~~~- 512 (781)
.++.+..++||++..++.+.++++++|++|.|+.+++.+..+... .+.+.++|..|+................
T Consensus 50 ~~~~~~~g~g~~~~~~~~~~~~~~~~nl~g~g~~~~~~~~~s~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~ 129 (390)
T 2qdz_A 50 SLGMDNSGPGTPENGRYKYNASVTANDLLGLNDTLGLYIGNRYYRDAGHDAERNYDLMYSVPLGRTRLDLQTGYSTYRNL 129 (390)
T ss_dssp EEEEEECSCSSSCSSCEEEEEEEEEECSSSSSCEEEEEEEEECCSCCSSCEEEEEEEEEEEEETTEEEEEEEEEEEEECC
T ss_pred CCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEEEC
T ss_conf 33334345774456740366667763567877368999872443355555521234552023332114888776541000
Q ss_pred ----CCCCCCCCCCCCCEEEEEEECCCCEEEE--ECCCEEEEEEECCCCCCCCCHHHHHHHCCCCCEEEEEEEEECCCCC
Q ss_conf ----3333343233320245542025430235--4041257764014675442011122101585024678843215542
Q gi|254780772|r 513 ----LEDGSLDINDESAAVRMIVPITESISTS--FKYDLRFLQYGAISEKEKIPSIYTTLIEHGKFSSHSISQSIIYNTL 586 (781)
Q Consensus 513 ----~~~~~y~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~dtr 586 (781)
.....+........+.+++++....... +++.+.+........... ............+...+.++.+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 203 (390)
T 2qdz_A 130 LKTRYGQYQSAGNSRSFGLKATRLLYRDTRSQFSVYGGLKLRQNKNYLAGTR------LDVSSKHYSDVTVGMQYSTQRG 203 (390)
T ss_dssp CSSSSCCCCCEEEEEEEEEEEEEEEECCSSEEEEEEEEEEEEEEEEECCTTS------CCCEEEEEEEEEEEEEEEEECS
T ss_pred CCCCCCCEECCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEEECCEECCCCC------CCCCCEEEEEEEEEEEEEEECC
T ss_conf 3565421001330369987887642026745688988899987100026731------1135404667888654688846
Q ss_pred CCCCCCCCCEEEEEEECC------CCCCCCCEEEEEEEEEEEEEEECCCE-EEEEEEEEEEEEEECCCCCCCCHHEEEEC
Q ss_conf 011002465156542024------56555420366663004799935880-99999999789851699741230127507
Q gi|254780772|r 587 DNPIVPRKGMLISSSYDY------AGFGGDSQYHRIGSRASYFYLLSDDS-DIVGSLRFGYGCVIPSNKNLQLFDQFSVS 659 (781)
Q Consensus 587 D~~~~Pt~G~~~~~~~~~------a~~g~d~~f~k~~~~~~~y~~l~~~~-~l~~~~~~g~~~~~~~~~~lp~~erF~lG 659 (781)
|+..+|+.|+........ ..++++.+|.++.+++++|+|+.... .+.+.. +++... .++.+|++++|++|
T Consensus 204 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~-~~~~lp~~~~f~lG 280 (390)
T 2qdz_A 204 ANAYFGDLSFTRGVGVNNGKYAAYDERGPQGNVSRFNGSLAWTRYMALAGQPIQWAS--QLGFQY-SRQQLLNSYQITVG 280 (390)
T ss_dssp SEEEEEEEEEEECCCC--------------CCCEEEEEEEEEEEEEEETTEEEEEEE--EEEEEE-CSSCSSSSEECCSC
T ss_pred CCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCEEEEE--EEEEEE-CCCCCCCCCEEEEC
T ss_conf 860414434212543345544332356787735999999999986024566402688--998886-68877754369857
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCC--CCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCE
Q ss_conf 897140212686155037997222147899999999614565--654537999999767741566667754445676642
Q gi|254780772|r 660 SNYYLRGFAYKGIGPRVDKKYAIGGKIYSSASAAVSFPMPLV--PERAGLRGAFFVDSATLYANHVALGADKLEGNDSFW 737 (781)
Q Consensus 660 G~~svRGy~~~~iGP~~~~~~~~GG~~~~~~s~E~r~pl~~~--~~~~~l~~~~F~D~G~v~~~~~~~~~~~~~~~~~~~ 737 (781)
|.++||||..+.+ .+|+.++.+++|||+|++.. .....+++++|+|+|+||+....... .+
T Consensus 281 G~~~lRGy~~~~~---------~~Gd~~~~~~~Elr~~l~~~~~~~~~~l~~~~F~D~G~v~~~~~~~~~--------~~ 343 (390)
T 2qdz_A 281 DEYTVRGYNLRTS---------QSGDSGVYLSNTLTVPVQFSLLGKQASVAPFVGADVGALKSNHPDART--------IR 343 (390)
T ss_dssp CCCCCTTCCCCCS---------CCSSCSSCCEESEEEEEEEEEEECCSSCEEEEEEEEEEEECSSSSCCE--------EE
T ss_pred CCCCEECCCCCCC---------CCCCCEEEEEEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCCCCC--------CE
T ss_conf 9985726178985---------464436999999999754545667625999999999995357888888--------76
Q ss_pred EEEEEEEEEEECCCCCEEEEEEEECCCCCCC---EEEEEEEEEEECC
Q ss_conf 4799999997557001589988722677876---0258999641059
Q gi|254780772|r 738 RVSTGVEIMWNSPLGMMGVYYGIPLRHREGD---KIQQFGFRIGNRM 781 (781)
Q Consensus 738 r~s~G~Glr~~tP~Gpirld~a~pl~~~~~D---~~~~f~FsiG~~f 781 (781)
+.|+|+||||.+|+|||||+||+|+++.+++ ...+|+|+||+.|
T Consensus 344 ~~s~G~Glr~~~~~~~l~l~~a~~l~~~~~~~~~~~~~~~f~ig~~F 390 (390)
T 2qdz_A 344 MAGLAAGVRFDLPYARMSFTYSKPVGAQPGGAPRAPVWLYINAGLSF 390 (390)
T ss_dssp EEEEEEEEEECCSSEEEEEEEEEECSCSCSSSCCCCSEEEEEEEEEC
T ss_pred EEEEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEC
T ss_conf 99999999999388789999998767898887688659999998289