Query gi|254780772|ref|YP_003065185.1| surface antigen (D15) [Candidatus Liberibacter asiaticus str. psy62] Match_columns 781 No_of_seqs 308 out of 3546 Neff 8.7 Searched_HMMs 33803 Date Wed Jun 1 14:11:57 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780772.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2qdz_A TPSB transporter FHAC; 100.0 1.2E-36 3.4E-41 256.8 23.3 316 440-781 50-390 (390) 2 >2qdz_A TPSB transporter FHAC; 99.9 2.5E-25 7.3E-30 182.7 1.3 163 271-440 2-164 (164) 3 >3efc_A OMP85, outer membrane 99.9 1.5E-23 4.4E-28 171.0 3.0 146 282-428 1-146 (148) 4 >2qdz_A TPSB transporter FHAC; 99.8 9.6E-20 2.8E-24 146.1 5.9 162 182-362 2-163 (164) 5 >3efc_A OMP85, outer membrane 99.7 1.2E-17 3.7E-22 132.3 4.9 134 115-260 3-138 (148) 6 >2qdf_A OMP85, outer membrane 99.7 5.7E-17 1.7E-21 127.9 5.3 88 194-281 2-91 (91) 7 >3efc_A OMP85, outer membrane 99.6 1.3E-16 4E-21 125.5 4.4 89 193-281 2-92 (92) 8 >2qdf_A OMP85, outer membrane 99.5 1E-13 3E-18 106.7 8.7 79 114-192 1-82 (82) 9 >3efc_A OMP85, outer membrane 99.5 2E-13 5.9E-18 104.7 9.6 79 113-191 1-82 (82) 10 >2qdf_A OMP85, outer membrane 99.4 6.7E-13 2E-17 101.3 9.9 74 40-113 2-75 (75) 11 >2qdf_A OMP85, outer membrane 99.4 4.3E-14 1.3E-18 109.1 3.0 84 114-197 2-86 (87) 12 >2qdf_A OMP85, outer membrane 99.4 3.3E-12 9.8E-17 96.7 10.3 87 282-369 1-87 (87) 13 >3efc_A OMP85, outer membrane 99.4 2.4E-12 7.1E-17 97.7 7.8 72 41-112 2-73 (73) 14 >2qdf_A OMP85, outer membrane 99.2 4.3E-11 1.3E-15 89.5 8.1 78 115-192 3-91 (91) 15 >2qdf_A OMP85, outer membrane 99.2 2.1E-11 6.1E-16 91.5 5.5 81 195-281 2-82 (82) 16 >3efc_A OMP85, outer membrane 99.2 1.9E-11 5.5E-16 91.8 5.0 80 113-192 2-92 (92) 17 >3efc_A OMP85, outer membrane 99.2 4.1E-11 1.2E-15 89.6 5.9 82 193-280 1-82 (82) 18 >3efc_A OMP85, outer membrane 99.1 1E-11 3.1E-16 93.5 1.8 72 360-438 2-73 (73) 19 >2qdf_A OMP85, outer membrane 99.1 1.2E-11 3.6E-16 93.1 1.3 73 360-439 3-75 (75) 20 >2vh2_A FTSQ, cell division pr 97.8 7.6E-05 2.2E-09 48.6 6.8 79 35-113 15-96 (97) 21 >2vh1_A FTSQ, cell division pr 96.9 0.0062 1.8E-07 36.0 8.0 66 48-113 1-70 (71) 22 >2vh2_A FTSQ, cell division pr 87.1 0.14 4.3E-06 27.1 0.1 56 365-420 26-83 (97) 23 >3a7r_A Lipoate-protein ligase 63.5 3.8 0.00011 17.8 1.8 12 310-321 54-65 (93) 24 >2fna_A Conserved hypothetical 61.2 5.3 0.00016 16.9 2.2 35 62-96 21-55 (72) 25 >1vqz_A Lipoate-protein ligase 53.6 4 0.00012 17.7 0.5 12 351-362 18-29 (90) 26 >2k4v_A Uncharacterized protei 33.3 11 0.00032 14.8 0.1 20 383-402 102-121 (125) 27 >1p4t_A Outer membrane protein 32.1 21 0.00063 12.9 10.3 26 735-760 104-130 (155) 28 >1ioo_A SF11-RNAse; SELF-incom 24.7 29 0.00085 12.1 3.8 28 298-325 116-143 (196) 29 >1t6s_A Conserved hypothetical 24.5 29 0.00086 12.0 1.1 42 119-164 15-56 (85) 30 >2ihc_A Transcription regulato 21.9 32 0.00096 11.7 3.3 25 80-104 15-39 (124) 31 >2sak_A Staphylokinase; plasmi 21.3 31 0.00092 11.8 0.7 45 373-419 20-67 (121) 32 >1kmo_A FECA, iron(III) dicitr 21.2 23 0.00069 12.7 0.0 22 739-760 717-738 (774) 33 >1c76_A Staphylokinase, SAK; b 21.1 33 0.00097 11.7 0.7 44 373-418 35-81 (136) 34 >1a76_A Flap endonuclease-1 pr 20.7 34 0.001 11.6 2.0 13 395-407 231-243 (261) 35 >1qjp_A Outer membrane protein 20.2 35 0.001 11.5 10.6 26 737-762 119-145 (171) 36 >2b39_A C3; thioester, immune 20.0 35 0.001 11.5 1.3 10 353-362 24-33 (145) 37 >2yy9_A Zinc finger and BTB do 20.0 35 0.001 11.5 3.7 20 82-101 13-32 (135) No 1 >>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} (A:1-45,A:210-554) Probab=100.00 E-value=1.2e-36 Score=256.80 Aligned_cols=316 Identities=13% Similarity=0.083 Sum_probs=228.1 Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEECC------CCEEEEEEEECCCCCCCCCCCCCCCCCC- Q ss_conf 211111111122332110000011123332344220037874112------2111134541123577754310011113- Q gi|254780772|r 440 SAGSVGIATNYEVDKGMGVEGHIDDNNFFGQGYRARLAAGFGRHA------VQNYTFSVEDPYFLGSPISAGFDLQKTH- 512 (781) Q Consensus 440 ~tg~~~~g~gys~~~g~~~~~~~~~~Nl~G~G~~l~l~~~~~~~~------~~~~~~s~~~P~~~~~~~s~~~~~~~~~- 512 (781) .++.+..++||++..++.+.++++++|++|.|+.+++.+..+... .+.+.++|..|+................ T Consensus 50 ~~~~~~~g~g~~~~~~~~~~~~~~~~nl~g~g~~~~~~~~~s~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~ 129 (390) T 2qdz_A 50 SLGMDNSGPGTPENGRYKYNASVTANDLLGLNDTLGLYIGNRYYRDAGHDAERNYDLMYSVPLGRTRLDLQTGYSTYRNL 129 (390) T ss_dssp EEEEEECSCSSSCSSCEEEEEEEEEECSSSSSCEEEEEEEEECCSCCSSCEEEEEEEEEEEEETTEEEEEEEEEEEEECC T ss_pred CCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEEEC T ss_conf 33334345774456740366667763567877368999872443355555521234552023332114888776541000 Q ss_pred ----CCCCCCCCCCCCCEEEEEEECCCCEEEE--ECCCEEEEEEECCCCCCCCCHHHHHHHCCCCCEEEEEEEEECCCCC Q ss_conf ----3333343233320245542025430235--4041257764014675442011122101585024678843215542 Q gi|254780772|r 513 ----LEDGSLDINDESAAVRMIVPITESISTS--FKYDLRFLQYGAISEKEKIPSIYTTLIEHGKFSSHSISQSIIYNTL 586 (781) Q Consensus 513 ----~~~~~y~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~dtr 586 (781) .....+........+.+++++....... +++.+.+........... ............+...+.++.+ T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 203 (390) T 2qdz_A 130 LKTRYGQYQSAGNSRSFGLKATRLLYRDTRSQFSVYGGLKLRQNKNYLAGTR------LDVSSKHYSDVTVGMQYSTQRG 203 (390) T ss_dssp CSSSSCCCCCEEEEEEEEEEEEEEEECCSSEEEEEEEEEEEEEEEEECCTTS------CCCEEEEEEEEEEEEEEEEECS T ss_pred CCCCCCCEECCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEEECCEECCCCC------CCCCCEEEEEEEEEEEEEEECC T ss_conf 3565421001330369987887642026745688988899987100026731------1135404667888654688846 Q ss_pred CCCCCCCCCEEEEEEECC------CCCCCCCEEEEEEEEEEEEEEECCCE-EEEEEEEEEEEEEECCCCCCCCHHEEEEC Q ss_conf 011002465156542024------56555420366663004799935880-99999999789851699741230127507 Q gi|254780772|r 587 DNPIVPRKGMLISSSYDY------AGFGGDSQYHRIGSRASYFYLLSDDS-DIVGSLRFGYGCVIPSNKNLQLFDQFSVS 659 (781) Q Consensus 587 D~~~~Pt~G~~~~~~~~~------a~~g~d~~f~k~~~~~~~y~~l~~~~-~l~~~~~~g~~~~~~~~~~lp~~erF~lG 659 (781) |+..+|+.|+........ ..++++.+|.++.+++++|+|+.... .+.+.. +++... .++.+|++++|++| T Consensus 204 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~-~~~~lp~~~~f~lG 280 (390) T 2qdz_A 204 ANAYFGDLSFTRGVGVNNGKYAAYDERGPQGNVSRFNGSLAWTRYMALAGQPIQWAS--QLGFQY-SRQQLLNSYQITVG 280 (390) T ss_dssp SEEEEEEEEEEECCCC--------------CCCEEEEEEEEEEEEEEETTEEEEEEE--EEEEEE-CSSCSSSSEECCSC T ss_pred CCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCEEEEE--EEEEEE-CCCCCCCCCEEEEC T ss_conf 860414434212543345544332356787735999999999986024566402688--998886-68877754369857 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCC--CCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCE Q ss_conf 897140212686155037997222147899999999614565--654537999999767741566667754445676642 Q gi|254780772|r 660 SNYYLRGFAYKGIGPRVDKKYAIGGKIYSSASAAVSFPMPLV--PERAGLRGAFFVDSATLYANHVALGADKLEGNDSFW 737 (781) Q Consensus 660 G~~svRGy~~~~iGP~~~~~~~~GG~~~~~~s~E~r~pl~~~--~~~~~l~~~~F~D~G~v~~~~~~~~~~~~~~~~~~~ 737 (781) |.++||||..+.+ .+|+.++.+++|||+|++.. .....+++++|+|+|+||+....... .+ T Consensus 281 G~~~lRGy~~~~~---------~~Gd~~~~~~~Elr~~l~~~~~~~~~~l~~~~F~D~G~v~~~~~~~~~--------~~ 343 (390) T 2qdz_A 281 DEYTVRGYNLRTS---------QSGDSGVYLSNTLTVPVQFSLLGKQASVAPFVGADVGALKSNHPDART--------IR 343 (390) T ss_dssp CCCCCTTCCCCCS---------CCSSCSSCCEESEEEEEEEEEEECCSSCEEEEEEEEEEEECSSSSCCE--------EE T ss_pred CCCCEECCCCCCC---------CCCCCEEEEEEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCCCCC--------CE T ss_conf 9985726178985---------464436999999999754545667625999999999995357888888--------76 Q ss_pred EEEEEEEEEEECCCCCEEEEEEEECCCCCCC---EEEEEEEEEEECC Q ss_conf 4799999997557001589988722677876---0258999641059 Q gi|254780772|r 738 RVSTGVEIMWNSPLGMMGVYYGIPLRHREGD---KIQQFGFRIGNRM 781 (781) Q Consensus 738 r~s~G~Glr~~tP~Gpirld~a~pl~~~~~D---~~~~f~FsiG~~f 781 (781) +.|+|+||||.+|+|||||+||+|+++.+++ ...+|+|+||+.| T Consensus 344 ~~s~G~Glr~~~~~~~l~l~~a~~l~~~~~~~~~~~~~~~f~ig~~F 390 (390) T 2qdz_A 344 MAGLAAGVRFDLPYARMSFTYSKPVGAQPGGAPRAPVWLYINAGLSF 390 (390) T ss_dssp EEEEEEEEEECCSSEEEEEEEEEECSCSCSSSCCCCSEEEEEEEEEC T ss_pred EEEEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEC T ss_conf 99999999999388789999998767898887688659999998289 No 2 >>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} (A:46-209) Probab=99.90 E-value=2.5e-25 Score=182.67 Aligned_cols=163 Identities=10% Similarity=-0.047 Sum_probs=148.9 Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 41012202222100000123334445576777753211699621121000000000000234456420112332234344 Q gi|254780772|r 271 YVLIFQIDEGEIYTVGNISIQSTLQEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVRVKTRINRDFAK 350 (781) Q Consensus 271 ~~i~~~I~EG~~y~i~~i~i~g~~~~~~~~~l~~~~~~k~G~~~~~~~~~~~~~~i~~~y~~~GY~fa~v~~~~~~d~~~ 350 (781) ++|+|.|+||++|+|++|.|.|+ ..++.+.|.+.+.+++|++|+...++++.++|.+.|.++||++++|.+.. ... T Consensus 2 v~i~~~i~eg~~~~i~~i~i~G~-~~~~~~~l~~~~~~~~g~~~~~~~l~~~~~~i~~~y~~~Gy~~a~v~~~~---~~~ 77 (164) T 2qdz_A 2 PARKPDATSGHTVTVHAVDLDFG-VEGRLFDPAPLVQDYLNRPLDNEQLFLLVKALSAALYDRGYATSIVTFVP---PGV 77 (164) T ss_dssp ------CBCCCSSSSCCEEEECC-SSSCCCSCSTTSTTSSSSCBCSTTHHHHHHHHHHHHHHTTCTTCEEEEEE---EEE T ss_pred CCCCCCCCCCCEEEEEEEEEECC-CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECC---CCC T ss_conf 76445689885399999999588-65898999987675069805899999999999999997898457977225---666 Q ss_pred CEEEEEEECCCCCCCEEECCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC Q ss_conf 04665541233322011003333432003321001001000000012344456667765101234453325443565431 Q gi|254780772|r 351 RIVDIEYLIDQGSPLYVKRIEIEGNDQSYDSVIRRELELSEGDPINYSMIERAKRRIMATGYFSEVNISQLPANDVSDYV 430 (781) Q Consensus 351 ~~vdi~~~I~eg~~~~i~~I~I~GN~~T~d~VIrrel~~~~Gd~~~~~~i~~s~~~L~~lg~F~~V~i~~~~~~~~~~~v 430 (781) ..+++.+.|.||++++++.|.+.||.++++.++++.++++||++|+...++++.++|+++|+|++|++.+.+ .++.+ T Consensus 78 ~~~~v~~~v~eG~~~~i~~i~~~g~~~~~~~~l~~~~~~~~g~~~~~~~l~~~~~~l~~~g~f~~v~i~~~~---~~~~~ 154 (164) T 2qdz_A 78 VDGVLKLKVEWGRIKGWLIDGKPLEGTRDRMMVFSAMPGWQDKVLNVFDIDQAIYNINNGGKTGNITIVPAD---EYGYS 154 (164) T ss_dssp ETTEEEEEEECCEEEEEEETTEECCSHHHHHHHHHHSTTCTTCBCCHHHHHHHHHHHCSSSEEEEEEEEECS---STTEE T ss_pred CCCEEEEEEEEEEEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC---CCCCC T ss_conf 664799999996676699974267662266667765666778845767899999986474763169985188---78863 Q ss_pred CCCCCCCCCC Q ss_conf 0233221122 Q gi|254780772|r 431 ILRVSVKQLS 440 (781) Q Consensus 431 dl~i~v~E~~ 440 (781) +|.++|+|+. T Consensus 155 ~i~~~v~Ers 164 (164) T 2qdz_A 155 YLDLQLQRRA 164 (164) T ss_dssp EEEEEEEECC T ss_pred CCEEEEEECC T ss_conf 2102235413 No 3 >>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane; 3.30A {Escherichia coli} (A:248-395) Probab=99.87 E-value=1.5e-23 Score=171.02 Aligned_cols=146 Identities=25% Similarity=0.445 Sum_probs=139.2 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC Q ss_conf 10000012333444557677775321169962112100000000000023445642011233223434404665541233 Q gi|254780772|r 282 IYTVGNISIQSTLQEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVRVKTRINRDFAKRIVDIEYLIDQ 361 (781) Q Consensus 282 ~y~i~~i~i~g~~~~~~~~~l~~~~~~k~G~~~~~~~~~~~~~~i~~~y~~~GY~fa~v~~~~~~d~~~~~vdi~~~I~e 361 (781) ||+|++|.|+|+ ..++.+++.+.+.+++|++|+...++++.++|.++|.++||++++|.+.+..+.+++++++.+.+.+ T Consensus 1 r~~i~~I~i~G~-~~~~~~~l~~~~~~~~g~~~~~~~i~~~~~~l~~~y~~~Gy~~a~v~~~~~~~~~~~~~~i~~~v~~ 79 (148) T 3efc_A 1 QYKLSGVEVSGN-LAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKTVKLRVNVDA 79 (148) T ss_dssp CCEEEEECCBSC-CTTCHHHHHHTCCCCSSCBCCHHHHHHHHHHHHHHHHHTTCSSCEEEEEEEEETTTTEEEEEEEEEC T ss_pred EEEEEEEEEECC-CCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEEEEEECC T ss_conf 278877664057-3233201222210100111025666556678899998607542113552044267868999999843 Q ss_pred CCCCEEECCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC Q ss_conf 3220110033334320033210010010000000123444566677651012344533254435654 Q gi|254780772|r 362 GSPLYVKRIEIEGNDQSYDSVIRRELELSEGDPINYSMIERAKRRIMATGYFSEVNISQLPANDVSD 428 (781) Q Consensus 362 g~~~~i~~I~I~GN~~T~d~VIrrel~~~~Gd~~~~~~i~~s~~~L~~lg~F~~V~i~~~~~~~~~~ 428 (781) |++++|++|.|.||.++++.+|++.+.++||++|+..++++++++|+++++|++|++.+.+.++.++ T Consensus 80 g~~~~i~~i~i~G~~~~~~~~i~~~~~~~~g~~~~~~~i~~~~~~l~~~~~f~~v~v~~~~~~~~~~ 146 (148) T 3efc_A 80 GNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVDQGKERLNRLGFFETVDTDTQRVPGSPD 146 (148) T ss_dssp CCCCCC------------------------------------------------------------- T ss_pred CCCEEEEEEEEECCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC T ss_conf 8818999999989885755541210036998547999999999999847997610446403899989 No 4 >>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} (A:46-209) Probab=99.79 E-value=9.6e-20 Score=146.10 Aligned_cols=162 Identities=12% Similarity=0.016 Sum_probs=136.5 Q ss_pred EEEEEEEECCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 25889860366324677875044311012222111001221124456664310233334578888887542322100123 Q gi|254780772|r 182 LNITYVIEEGVKAKINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYHDRGYAAVKVSSQ 261 (781) Q Consensus 182 v~i~~~I~EG~~~~I~~I~f~Gn~~f~~~~L~~~~~~k~~~~~~~~~~~~~~~~~l~~D~~~l~~~Y~~~GY~d~~V~~~ 261 (781) |+|+|+|+||+++.|++|.|+||+.+++.+|.+.+..++. +.|+.+.++.+.++|+++|+++||++++|..+ T Consensus 2 v~i~~~i~eg~~~~i~~i~i~G~~~~~~~~l~~~~~~~~g--------~~~~~~~l~~~~~~i~~~y~~~Gy~~a~v~~~ 73 (164) T 2qdz_A 2 PARKPDATSGHTVTVHAVDLDFGVEGRLFDPAPLVQDYLN--------RPLDNEQLFLLVKALSAALYDRGYATSIVTFV 73 (164) T ss_dssp ------CBCCCSSSSCCEEEECCSSSCCCSCSTTSTTSSS--------SCBCSTTHHHHHHHHHHHHHHTTCTTCEEEEE T ss_pred CCCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEC T ss_conf 7644568988539999999958865898999987675069--------80589999999999999999789845797722 Q ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEECCCCCCHHHHHCCCCCCCCCCCCCCCC Q ss_conf 10124555541012202222100000123334445576777753211699621121000000000000234456420112 Q gi|254780772|r 262 VLFDKQKSGYVLIFQIDEGEIYTVGNISIQSTLQEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVRVK 341 (781) Q Consensus 262 ~~~~~~~~~~~i~~~I~EG~~y~i~~i~i~g~~~~~~~~~l~~~~~~k~G~~~~~~~~~~~~~~i~~~y~~~GY~fa~v~ 341 (781) - .+...+.+++.|.||++++++.+.+.|+ ..++++.+.+.+++++|++|+...++++.++|... || |..+. T Consensus 74 ~---~~~~~~~v~~~v~eG~~~~i~~i~~~g~-~~~~~~~l~~~~~~~~g~~~~~~~l~~~~~~l~~~----g~-f~~v~ 144 (164) T 2qdz_A 74 P---PGVVDGVLKLKVEWGRIKGWLIDGKPLE-GTRDRMMVFSAMPGWQDKVLNVFDIDQAIYNINNG----GK-TGNIT 144 (164) T ss_dssp E---EEEETTEEEEEEECCEEEEEEETTEECC-SHHHHHHHHHHSTTCTTCBCCHHHHHHHHHHHCSS----SE-EEEEE T ss_pred C---CCCCCCEEEEEEEEEEEEEEEEEECCCC-CCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCC----CC-CEEEE T ss_conf 5---6666647999999966766999742676-62266667765666778845767899999986474----76-31699 Q ss_pred CCCCCCCCCCEEEEEEECCCC Q ss_conf 332234344046655412333 Q gi|254780772|r 342 TRINRDFAKRIVDIEYLIDQG 362 (781) Q Consensus 342 ~~~~~d~~~~~vdi~~~I~eg 362 (781) +.....++.++|.+.|.|+ T Consensus 145 --i~~~~~~~~~~i~~~v~Er 163 (164) T 2qdz_A 145 --IVPADEYGYSYLDLQLQRR 163 (164) T ss_dssp --EEECSSTTEEEEEEEEEEC T ss_pred --EECCCCCCCCCCEEEEEEC T ss_conf --8518878863210223541 No 5 >>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane; 3.30A {Escherichia coli} (A:248-395) Probab=99.70 E-value=1.2e-17 Score=132.26 Aligned_cols=134 Identities=17% Similarity=0.253 Sum_probs=107.1 Q ss_pred EEEEEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEE-EECCCCCEEEEEEEECCCC Q ss_conf 365799956543698899887300578637999999999999999997297001799876-4338984258898603663 Q gi|254780772|r 115 IINHLFFSGNNNLKDDQLKMIVRSRSAAAYDEDTVNADVHNIKQAYASIGYLNVMVKVQH-HSISPTTLNITYVIEEGVK 193 (781) Q Consensus 115 ~i~~i~~~Gn~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~i~~~y~~~Gy~~a~V~~~~-~~~~~~~v~i~~~I~EG~~ 193 (781) .|++|.|+|+..++.++|.+.+.++.|++|+...+++++++|.++|+++||++|.|.+.. ...+.+.+.|.+.|+||++ T Consensus 3 ~i~~I~i~G~~~~~~~~l~~~~~~~~g~~~~~~~i~~~~~~l~~~y~~~Gy~~a~v~~~~~~~~~~~~~~i~~~v~~g~~ 82 (148) T 3efc_A 3 KLSGVEVSGNLAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKTVKLRVNVDAGNR 82 (148) T ss_dssp EEEEECCBSCCTTCHHHHHHTCCCCSSCBCCHHHHHHHHHHHHHHHHHTTCSSCEEEEEEEEETTTTEEEEEEEEECCCC T ss_pred EEEEEEEECCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEEEEEECCCCC T ss_conf 88776640573233201222210100111025666556678899998607542113552044267868999999843881 Q ss_pred EEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHCCC Q ss_conf 2467787504431101222211100122112445666431023333457888888754232-210012 Q gi|254780772|r 194 AKINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYHDRGYA-AVKVSS 260 (781) Q Consensus 194 ~~I~~I~f~Gn~~f~~~~L~~~~~~k~~~~~~~~~~~~~~~~~l~~D~~~l~~~Y~~~GY~-d~~V~~ 260 (781) ++|.+|.+.||..++++.+++.+..++.. .|+...++.++++|.+ .||+ +++|.. T Consensus 83 ~~i~~i~i~G~~~~~~~~i~~~~~~~~g~--------~~~~~~i~~~~~~l~~----~~~f~~v~v~~ 138 (148) T 3efc_A 83 FYVRKIRFEGNDTSKDAVLRREMRQMEGA--------WLGSDLVDQGKERLNR----LGFFETVDTDT 138 (148) T ss_dssp CCC----------------------------------------------------------------- T ss_pred EEEEEEEEECCCCCCCHHHHHCCCCCCCC--------CCCHHHHHHHHHHHHH----CCCCCCEEEEE T ss_conf 89999999898857555412100369985--------4799999999999984----79976104464 No 6 >>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A (A:158-248) Probab=99.67 E-value=5.7e-17 Score=127.91 Aligned_cols=88 Identities=31% Similarity=0.502 Sum_probs=81.9 Q ss_pred EEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCC Q ss_conf 246778750443110122221110012211244-5666431023333457888888754232210012-31012455554 Q gi|254780772|r 194 AKINSIRFVGNKNYSHARLERVISIRTSGYFSF-GKTDVYSKERMSFDEEAIRAFYHDRGYAAVKVSS-QVLFDKQKSGY 271 (781) Q Consensus 194 ~~I~~I~f~Gn~~f~~~~L~~~~~~k~~~~~~~-~~~~~~~~~~l~~D~~~l~~~Y~~~GY~d~~V~~-~~~~~~~~~~~ 271 (781) ++|++|.|+||+.||+++|+++|.+++..||++ ..++.|++++++.|+++|+++|+++||+||+|.+ .+..+++++.+ T Consensus 2 ~kI~~I~f~Gn~~~s~~~L~~~i~~k~~~~~~~~~~~~~~~~~~l~~D~~~l~~~Y~~~Gy~da~V~~~~v~~~~~~~~v 81 (91) T 2qdf_A 2 AEIQQINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGI 81 (91) T ss_dssp CEEEEEEEESCCSSCHHHHHGGGSCC--------------CCSCHHHHHHHHHHHHHTTTCTTCEEEEEEEEECTTSSEE T ss_pred EEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHEECCCCCC T ss_conf 00135521145443202344444431001111012454201567777788999999843543246511111100024440 Q ss_pred CEEEEECCCC Q ss_conf 1012202222 Q gi|254780772|r 272 VLIFQIDEGE 281 (781) Q Consensus 272 ~i~~~I~EG~ 281 (781) .|+|.|+||+ T Consensus 82 ~I~~~I~EGe 91 (91) T 2qdf_A 82 YVTVNITEGD 91 (91) T ss_dssp EEEEEEECCC T ss_pred EEEECCCCCC T ss_conf 3554113110 No 7 >>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane; 3.30A {Escherichia coli} (A:156-247) Probab=99.64 E-value=1.3e-16 Score=125.49 Aligned_cols=89 Identities=30% Similarity=0.497 Sum_probs=82.4 Q ss_pred CEEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCC Q ss_conf 3246778750443110122221110012211244-5666431023333457888888754232210012-3101245555 Q gi|254780772|r 193 KAKINSIRFVGNKNYSHARLERVISIRTSGYFSF-GKTDVYSKERMSFDEEAIRAFYHDRGYAAVKVSS-QVLFDKQKSG 270 (781) Q Consensus 193 ~~~I~~I~f~Gn~~f~~~~L~~~~~~k~~~~~~~-~~~~~~~~~~l~~D~~~l~~~Y~~~GY~d~~V~~-~~~~~~~~~~ 270 (781) +++|++|.|+||+.|++++|++.|.+++.+||++ +.++.|++++++.|+++|+++|+++||++|+|.+ .+..+++++. T Consensus 2 r~~I~~I~f~Gn~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~D~~~i~~~Y~~~GY~~a~V~~~~~~~~~~~~~ 81 (92) T 3efc_A 2 SAEIQQINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKG 81 (92) T ss_dssp CCCCCCCEEESCCSSCTTTTGGGCCCCSSCCSCCSCTTTHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCCEECTTSCS T ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCHHHHHHHHHHHCCEEEEEEECCEEEEECCCCC T ss_conf 31058984226533320777766542000000001456643310010208899888723675899971224798056774 Q ss_pred CCEEEEECCCC Q ss_conf 41012202222 Q gi|254780772|r 271 YVLIFQIDEGE 281 (781) Q Consensus 271 ~~i~~~I~EG~ 281 (781) +.|+|.|+||+ T Consensus 82 v~i~~~I~EGe 92 (92) T 3efc_A 82 IYVTVNITEGD 92 (92) T ss_dssp EECEEEEECCC T ss_pred EEEEECCCCCC T ss_conf 04620133341 No 8 >>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A (A:76-157) Probab=99.50 E-value=1e-13 Score=106.70 Aligned_cols=79 Identities=28% Similarity=0.436 Sum_probs=75.9 Q ss_pred CEEEEEEEECCCCCCHHHHHHHHH---HCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEEEEEEC Q ss_conf 536579995654369889988730---05786379999999999999999972970017998764338984258898603 Q gi|254780772|r 114 KIINHLFFSGNNNLKDDQLKMIVR---SRSAAAYDEDTVNADVHNIKQAYASIGYLNVMVKVQHHSISPTTLNITYVIEE 190 (781) Q Consensus 114 p~i~~i~~~Gn~~~~~~~l~~~~~---~~~g~~~~~~~~~~~~~~i~~~y~~~Gy~~a~V~~~~~~~~~~~v~i~~~I~E 190 (781) |+|++|.|+||+.+++++|++.+. +++|++|++.++++++++|+++|.++||++|+|++...+.++++|+|+|.|+| T Consensus 1 P~I~~I~~~Gn~~~~~~~L~~~l~~~~l~~g~~~~~~~l~~~~~~I~~~Y~~~Gy~~a~V~~~~~~~~~~~v~i~~~I~E 80 (82) T 2qdf_A 1 PTIASITFSGNKSVKDDMLKQNLEASGVRVGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTPLPRNRVDLKLVFQE 80 (82) T ss_dssp CEEEEEEEESCCSSCHHHHHHHHHTTTCCTTSBCCTTSHHHHHHHHHHHGGGGTBSSCEEEEEEEEETTTEEEEEEEEEC T ss_pred ECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCC T ss_conf 01133210011111012222221110223456553666666789999988641231110011234332210122101011 Q ss_pred CC Q ss_conf 66 Q gi|254780772|r 191 GV 192 (781) Q Consensus 191 G~ 192 (781) |- T Consensus 81 G~ 82 (82) T 2qdf_A 81 GV 82 (82) T ss_dssp CC T ss_pred CC T ss_conf 22 No 9 >>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane; 3.30A {Escherichia coli} (A:74-155) Probab=99.49 E-value=2e-13 Score=104.75 Aligned_cols=79 Identities=28% Similarity=0.435 Sum_probs=76.1 Q ss_pred CCEEEEEEEECCCCCCHHHHHHHH---HHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEEEEEE Q ss_conf 653657999565436988998873---00578637999999999999999997297001799876433898425889860 Q gi|254780772|r 113 RKIINHLFFSGNNNLKDDQLKMIV---RSRSAAAYDEDTVNADVHNIKQAYASIGYLNVMVKVQHHSISPTTLNITYVIE 189 (781) Q Consensus 113 ~p~i~~i~~~Gn~~~~~~~l~~~~---~~~~g~~~~~~~~~~~~~~i~~~y~~~Gy~~a~V~~~~~~~~~~~v~i~~~I~ 189 (781) +|.|++|.|+||+.+++++|.+.+ ++++|++|++..+++++++|+++|.++||++|.|++.+.+.+++.|+|+|.|+ T Consensus 1 k~~i~~i~~~Gn~~~~~~~l~~~l~~~~l~~g~~~~~~~l~~~~~~I~~~Y~~~Gy~~a~V~~~~~~~~~~~v~i~~~I~ 80 (82) T 3efc_A 1 RPTIASITFSGNKSVKDDMLKQNLEASGVRVGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTPLPRNRVDLKLVFQ 80 (82) T ss_dssp CCEEEEEEEESCTTSCHHHHHHHHHHHTCCSSSCCCGGGHHHHHHHHHHHHHTTTCCSCEEEEECCBCTTSEEEEEEEEE T ss_pred CCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCEEEEEEEEE T ss_conf 45222799984520344454333220144444412466789999999999987285368999887525775167898874 Q ss_pred CC Q ss_conf 36 Q gi|254780772|r 190 EG 191 (781) Q Consensus 190 EG 191 (781) || T Consensus 81 EG 82 (82) T 3efc_A 81 EG 82 (82) T ss_dssp CC T ss_pred EC T ss_conf 05 No 10 >>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A (A:1-75) Probab=99.45 E-value=6.7e-13 Score=101.29 Aligned_cols=74 Identities=23% Similarity=0.470 Sum_probs=71.1 Q ss_pred HHCCCCEEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEEEC Q ss_conf 51146526858999665007988999974878988268899999999999679800389998699899999936 Q gi|254780772|r 40 VYGSNTSIVRRIEIRGATNVGKEVILSRIPVVVGQSISDADLDHAVKNIYAMGYFSNVKIKIVDSVLIIDLIER 113 (781) Q Consensus 40 ~~~~~~~~i~~I~i~G~~~i~~~~i~~~~~~~~G~~~~~~~i~~~i~~l~~~g~F~~v~~~~~~~~l~~~v~e~ 113 (781) ++.++.+.|.+|.|+||++++++.|+..+++++|++|+.+.+++++++||+||||++|+++.+++.|+|+|+|+ T Consensus 2 ~~~~~~~~i~~I~v~Gn~~~~~~~i~~~l~~k~G~~~s~~~l~~~~~~L~~tg~F~~V~i~~~~~~L~i~v~Er 75 (75) T 2qdf_A 2 SHMAEGFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDISNTIRALFATGNFEDVRVLRDGDTLLVQVKER 75 (75) T ss_dssp --CCCCEECCEEEEESCSSSCHHHHHHTSSCCTTCEECHHHHHHHHHHHHTTSCEEEEEEEEETTEEEEEEEEC T ss_pred CCCCCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCEEEEEEEEE T ss_conf 76567637979999998246999999846899999079999999999999759902699996288799999974 No 11 >>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A (A:249-335) Probab=99.43 E-value=4.3e-14 Score=109.06 Aligned_cols=84 Identities=14% Similarity=0.203 Sum_probs=70.0 Q ss_pred CEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEC-CCCCEEEEEEEECCC Q ss_conf 5365799956543698899887300578637999999999999999997297001799876433-898425889860366 Q gi|254780772|r 114 KIINHLFFSGNNNLKDDQLKMIVRSRSAAAYDEDTVNADVHNIKQAYASIGYLNVMVKVQHHSI-SPTTLNITYVIEEGV 192 (781) Q Consensus 114 p~i~~i~~~Gn~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~i~~~y~~~Gy~~a~V~~~~~~~-~~~~v~i~~~I~EG~ 192 (781) -.|.+|.|+||+.++++.|.+.+.+++|++|++..+++++.+|+++|.++||+.|.|.+...+. +++.|+|+|.|+||+ T Consensus 2 y~v~~I~i~Gn~~~~~~~l~~~l~~~~G~~~~~~~l~~~~~~l~~~y~~~Gy~~a~V~~~~~~~~~~~~v~i~~~V~eg~ 81 (87) T 2qdf_A 2 YKLSGVEVSGNLAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKTVKLRVNVDAGN 81 (87) T ss_dssp CEEEEEEEEEECTTCHHHHHHHTCCCTTEECCHHHHHHHHHHHHHHHHTTTBSSCEEEEEEEEETTTTEEEEEEEEECCC T ss_pred EEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEEEEEEEECC T ss_conf 36731131157532114567663368999519999999999999999867986038987778848899898999997389 Q ss_pred CEEEE Q ss_conf 32467 Q gi|254780772|r 193 KAKIN 197 (781) Q Consensus 193 ~~~I~ 197 (781) +++|+ T Consensus 82 ~~~i~ 86 (87) T 2qdf_A 82 RFYVR 86 (87) T ss_dssp BCCCC T ss_pred CEEEC T ss_conf 65755 No 12 >>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A (A:249-335) Probab=99.39 E-value=3.3e-12 Score=96.75 Aligned_cols=87 Identities=20% Similarity=0.368 Sum_probs=79.2 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC Q ss_conf 10000012333444557677775321169962112100000000000023445642011233223434404665541233 Q gi|254780772|r 282 IYTVGNISIQSTLQEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVRVKTRINRDFAKRIVDIEYLIDQ 361 (781) Q Consensus 282 ~y~i~~i~i~g~~~~~~~~~l~~~~~~k~G~~~~~~~~~~~~~~i~~~y~~~GY~fa~v~~~~~~d~~~~~vdi~~~I~e 361 (781) ||+|++|+|.|+ ..++.++|.+.+++++|++|+...++++.++|.+.|.+.||.++.|.|.+..+.++++|+|+|.|+| T Consensus 1 ry~v~~I~i~Gn-~~~~~~~l~~~l~~~~G~~~~~~~l~~~~~~l~~~y~~~Gy~~a~V~~~~~~~~~~~~v~i~~~V~e 79 (87) T 2qdf_A 1 QYKLSGVEVSGN-LAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKTVKLRVNVDA 79 (87) T ss_dssp CCEEEEEEEEEE-CTTCHHHHHHHTCCCTTEECCHHHHHHHHHHHHHHHHTTTBSSCEEEEEEEEETTTTEEEEEEEEEC T ss_pred CEEEEEEEECCC-CCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEEEEEEEE T ss_conf 136731131157-5321145676633689995199999999999999998679860389877788488998989999973 Q ss_pred CCCCEEEC Q ss_conf 32201100 Q gi|254780772|r 362 GSPLYVKR 369 (781) Q Consensus 362 g~~~~i~~ 369 (781) |++++|++ T Consensus 80 g~~~~i~r 87 (87) T 2qdf_A 80 GNRFYVRK 87 (87) T ss_dssp CCBCCCCC T ss_pred CCCEEECC T ss_conf 89657559 No 13 >>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane; 3.30A {Escherichia coli} (A:1-73) Probab=99.36 E-value=2.4e-12 Score=97.66 Aligned_cols=72 Identities=22% Similarity=0.466 Sum_probs=68.0 Q ss_pred HCCCCEEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEEE Q ss_conf 114652685899966500798899997487898826889999999999967980038999869989999993 Q gi|254780772|r 41 YGSNTSIVRRIEIRGATNVGKEVILSRIPVVVGQSISDADLDHAVKNIYAMGYFSNVKIKIVDSVLIIDLIE 112 (781) Q Consensus 41 ~~~~~~~i~~I~i~G~~~i~~~~i~~~~~~~~G~~~~~~~i~~~i~~l~~~g~F~~v~~~~~~~~l~~~v~e 112 (781) +..+.+.|.+|+|+||++++++.|+..+++++|++|+.+.+++++++||+||||++|++..+++.|+|.|+| T Consensus 2 ~~g~~~~i~~I~i~G~~~~~~~~i~~~l~~k~G~~~s~~~i~~~~~~L~~~g~F~~V~v~~~~~~l~i~V~E 73 (73) T 3efc_A 2 AMAEGFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDISNTIRALFATGNFEDVRVLRDGDTLLVQVKE 73 (73) T ss_dssp ----CCCEEEEECSCCSSSCHHHHHHTCSCCTTSCCCTHHHHHHHHHHHHHCCEEEEEEECCSSEEEEEEEE T ss_pred CCCCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCEEEEEEEE T ss_conf 877771897999999835699999974699999927989999999999967995689999639999999995 No 14 >>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A (A:158-248) Probab=99.22 E-value=4.3e-11 Score=89.48 Aligned_cols=78 Identities=21% Similarity=0.337 Sum_probs=69.4 Q ss_pred EEEEEEEECCCCCCHHHHHHHHHHCC---------CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEE-EEEEC-CCCCEE Q ss_conf 36579995654369889988730057---------86379999999999999999972970017998-76433-898425 Q gi|254780772|r 115 IINHLFFSGNNNLKDDQLKMIVRSRS---------AAAYDEDTVNADVHNIKQAYASIGYLNVMVKV-QHHSI-SPTTLN 183 (781) Q Consensus 115 ~i~~i~~~Gn~~~~~~~l~~~~~~~~---------g~~~~~~~~~~~~~~i~~~y~~~Gy~~a~V~~-~~~~~-~~~~v~ 183 (781) .|.+|.|+||+.+++++|++.|..++ +.+|++..++.++++|+++|.++||++|+|.+ .+... +.+.+. T Consensus 3 kI~~I~f~Gn~~~s~~~L~~~i~~k~~~~~~~~~~~~~~~~~~l~~D~~~l~~~Y~~~Gy~da~V~~~~v~~~~~~~~v~ 82 (91) T 2qdf_A 3 EIQQINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIY 82 (91) T ss_dssp EEEEEEEESCCSSCHHHHHGGGSCC--------------CCSCHHHHHHHHHHHHHTTTCTTCEEEEEEEEECTTSSEEE T ss_pred EEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHEECCCCCCE T ss_conf 01355211454432023444444310011110124542015677777889999998435432465111111000244403 Q ss_pred EEEEEECCC Q ss_conf 889860366 Q gi|254780772|r 184 ITYVIEEGV 192 (781) Q Consensus 184 i~~~I~EG~ 192 (781) |+|.|+||. T Consensus 83 I~~~I~EGe 91 (91) T 2qdf_A 83 VTVNITEGD 91 (91) T ss_dssp EEEEEECCC T ss_pred EEECCCCCC T ss_conf 554113110 No 15 >>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A (A:76-157) Probab=99.20 E-value=2.1e-11 Score=91.54 Aligned_cols=81 Identities=21% Similarity=0.259 Sum_probs=69.3 Q ss_pred EEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEE Q ss_conf 46778750443110122221110012211244566643102333345788888875423221001231012455554101 Q gi|254780772|r 195 KINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYHDRGYAAVKVSSQVLFDKQKSGYVLI 274 (781) Q Consensus 195 ~I~~I~f~Gn~~f~~~~L~~~~~~k~~~~~~~~~~~~~~~~~l~~D~~~l~~~Y~~~GY~d~~V~~~~~~~~~~~~~~i~ 274 (781) .|.+|.|+||+.+++++|++.|++.. +..++.|+++.++.|+++|+++|+++||++++|+.++.. .+++.+.|+ T Consensus 2 ~I~~I~~~Gn~~~~~~~L~~~l~~~~-----l~~g~~~~~~~l~~~~~~I~~~Y~~~Gy~~a~V~~~~~~-~~~~~v~i~ 75 (82) T 2qdf_A 2 TIASITFSGNKSVKDDMLKQNLEASG-----VRVGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTP-LPRNRVDLK 75 (82) T ss_dssp EEEEEEEESCCSSCHHHHHHHHHTTT-----CCTTSBCCTTSHHHHHHHHHHHGGGGTBSSCEEEEEEEE-ETTTEEEEE T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCC-----CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCHHHH T ss_conf 11332100111110122222211102-----234565536666667899999886412311100112343-322101221 Q ss_pred EEECCCC Q ss_conf 2202222 Q gi|254780772|r 275 FQIDEGE 281 (781) Q Consensus 275 ~~I~EG~ 281 (781) |.|+||. T Consensus 76 ~~I~EG~ 82 (82) T 2qdf_A 76 LVFQEGV 82 (82) T ss_dssp EEEECCC T ss_pred HHHCCCC T ss_conf 0101122 No 16 >>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane; 3.30A {Escherichia coli} (A:156-247) Probab=99.19 E-value=1.9e-11 Score=91.83 Aligned_cols=80 Identities=19% Similarity=0.307 Sum_probs=70.7 Q ss_pred CCEEEEEEEECCCCCCHHHHHHHHHHCC---------CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEE-EEE-CCCCC Q ss_conf 6536579995654369889988730057---------863799999999999999999729700179987-643-38984 Q gi|254780772|r 113 RKIINHLFFSGNNNLKDDQLKMIVRSRS---------AAAYDEDTVNADVHNIKQAYASIGYLNVMVKVQ-HHS-ISPTT 181 (781) Q Consensus 113 ~p~i~~i~~~Gn~~~~~~~l~~~~~~~~---------g~~~~~~~~~~~~~~i~~~y~~~Gy~~a~V~~~-~~~-~~~~~ 181 (781) +|.|.+|.|+||+.+++++|++.+..++ +.+|++.++++++++|+++|.++||++|.|+.. +.. .+.+. T Consensus 2 r~~I~~I~f~Gn~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~D~~~i~~~Y~~~GY~~a~V~~~~~~~~~~~~~ 81 (92) T 3efc_A 2 SAEIQQINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKG 81 (92) T ss_dssp CCCCCCCEEESCCSSCTTTTGGGCCCCSSCCSCCSCTTTHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCCEECTTSCS T ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCHHHHHHHHHHHCCEEEEEEECCEEEEECCCCC T ss_conf 31058984226533320777766542000000001456643310010208899888723675899971224798056774 Q ss_pred EEEEEEEECCC Q ss_conf 25889860366 Q gi|254780772|r 182 LNITYVIEEGV 192 (781) Q Consensus 182 v~i~~~I~EG~ 192 (781) ++|+|.|+||. T Consensus 82 v~i~~~I~EGe 92 (92) T 3efc_A 82 IYVTVNITEGD 92 (92) T ss_dssp EECEEEEECCC T ss_pred EEEEECCCCCC T ss_conf 04620133341 No 17 >>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane; 3.30A {Escherichia coli} (A:74-155) Probab=99.17 E-value=4.1e-11 Score=89.58 Aligned_cols=82 Identities=21% Similarity=0.276 Sum_probs=68.8 Q ss_pred CEEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC Q ss_conf 32467787504431101222211100122112445666431023333457888888754232210012310124555541 Q gi|254780772|r 193 KAKINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYHDRGYAAVKVSSQVLFDKQKSGYV 272 (781) Q Consensus 193 ~~~I~~I~f~Gn~~f~~~~L~~~~~~k~~~~~~~~~~~~~~~~~l~~D~~~l~~~Y~~~GY~d~~V~~~~~~~~~~~~~~ 272 (781) |++|.+|.|+||+.+++++|++.|+... +..++.|+++.++.|+++|+++|+++||++|+|..++.. .+.+.+. T Consensus 1 k~~i~~i~~~Gn~~~~~~~l~~~l~~~~-----l~~g~~~~~~~l~~~~~~I~~~Y~~~Gy~~a~V~~~~~~-~~~~~v~ 74 (82) T 3efc_A 1 RPTIASITFSGNKSVKDDMLKQNLEASG-----VRVGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTP-LPRNRVD 74 (82) T ss_dssp CCEEEEEEEESCTTSCHHHHHHHHHHHT-----CCSSSCCCGGGHHHHHHHHHHHHHTTTCCSCEEEEECCB-CTTSEEE T ss_pred CCEEEEEEEECCCCCCHHHHHHHHHHCC-----CCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEE-CCCCEEE T ss_conf 4522279998452034445433322014-----444441246678999999999998728536899988752-5775167 Q ss_pred EEEEECCC Q ss_conf 01220222 Q gi|254780772|r 273 LIFQIDEG 280 (781) Q Consensus 273 i~~~I~EG 280 (781) |+|.|+|| T Consensus 75 i~~~I~EG 82 (82) T 3efc_A 75 LKLVFQEG 82 (82) T ss_dssp EEEEEECC T ss_pred EEEEEEEC T ss_conf 89887405 No 18 >>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane; 3.30A {Escherichia coli} (A:1-73) Probab=99.14 E-value=1e-11 Score=93.50 Aligned_cols=72 Identities=26% Similarity=0.306 Sum_probs=65.1 Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 3332201100333343200332100100100000001234445666776510123445332544356543102332211 Q gi|254780772|r 360 DQGSPLYVKRIEIEGNDQSYDSVIRRELELSEGDPINYSMIERAKRRIMATGYFSEVNISQLPANDVSDYVILRVSVKQ 438 (781) Q Consensus 360 ~eg~~~~i~~I~I~GN~~T~d~VIrrel~~~~Gd~~~~~~i~~s~~~L~~lg~F~~V~i~~~~~~~~~~~vdl~i~v~E 438 (781) .+|++++|++|.|.||.++++.+|++.+.++||++|+..++++++++|+++|+|++|.+.+. ..+|.++|+| T Consensus 2 ~~g~~~~i~~I~i~G~~~~~~~~i~~~l~~k~G~~~s~~~i~~~~~~L~~~g~F~~V~v~~~-------~~~l~i~V~E 73 (73) T 3efc_A 2 AMAEGFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDISNTIRALFATGNFEDVRVLRD-------GDTLLVQVKE 73 (73) T ss_dssp ----CCCEEEEECSCCSSSCHHHHHHTCSCCTTSCCCTHHHHHHHHHHHHHCCEEEEEEECC-------SSEEEEEEEE T ss_pred CCCCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEC-------CCEEEEEEEE T ss_conf 87777189799999983569999997469999992798999999999996799568999963-------9999999995 No 19 >>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A (A:1-75) Probab=99.12 E-value=1.2e-11 Score=93.05 Aligned_cols=73 Identities=26% Similarity=0.295 Sum_probs=67.2 Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 33322011003333432003321001001000000012344456667765101234453325443565431023322112 Q gi|254780772|r 360 DQGSPLYVKRIEIEGNDQSYDSVIRRELELSEGDPINYSMIERAKRRIMATGYFSEVNISQLPANDVSDYVILRVSVKQL 439 (781) Q Consensus 360 ~eg~~~~i~~I~I~GN~~T~d~VIrrel~~~~Gd~~~~~~i~~s~~~L~~lg~F~~V~i~~~~~~~~~~~vdl~i~v~E~ 439 (781) .+|++++|++|.|.||.++.+.+|++.+++++|++|+..++++++++|+++|+|++|.+++. ..+|.++|+|| T Consensus 3 ~~~~~~~i~~I~v~Gn~~~~~~~i~~~l~~k~G~~~s~~~l~~~~~~L~~tg~F~~V~i~~~-------~~~L~i~v~Er 75 (75) T 2qdf_A 3 HMAEGFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDISNTIRALFATGNFEDVRVLRD-------GDTLLVQVKER 75 (75) T ss_dssp -CCCCEECCEEEEESCSSSCHHHHHHTSSCCTTCEECHHHHHHHHHHHHTTSCEEEEEEEEE-------TTEEEEEEEEC T ss_pred CCCCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEC-------CCEEEEEEEEE T ss_conf 65676379799999982469999998468999990799999999999997599026999962-------88799999974 No 20 >>2vh2_A FTSQ, cell division protein FTSQ; potra, cell cycle; 3.4A {Yersinia enterocolitica} (A:1-97) Probab=97.79 E-value=7.6e-05 Score=48.58 Aligned_cols=79 Identities=11% Similarity=0.163 Sum_probs=65.9 Q ss_pred HHHHHHHCCCCEEEEEEEEECCC-CCCHHHHHHH-CCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEE-CCEEEEEEE Q ss_conf 99987511465268589996650-0798899997-48789882688999999999996798003899986-998999999 Q gi|254780772|r 35 FGLSAVYGSNTSIVRRIEIRGAT-NVGKEVILSR-IPVVVGQSISDADLDHAVKNIYAMGYFSNVKIKIV-DSVLIIDLI 111 (781) Q Consensus 35 ~~~~~~~~~~~~~i~~I~i~G~~-~i~~~~i~~~-~~~~~G~~~~~~~i~~~i~~l~~~g~F~~v~~~~~-~~~l~~~v~ 111 (781) .+.......+...|++|+|+|+. ..+++.|+.. .++..|+++-.-+.++..++|-+..+.+++++... .+.+.+.|+ T Consensus 15 ~~~~~~~~~~~~~i~~I~V~G~~~~~~~~~i~~~~~~~~~g~~~~~id~~~~~~~l~~~p~V~~a~V~r~~P~~l~I~v~ 94 (97) T 2vh2_A 15 VPRGSHMASSRLPLSKLVVTGERHYTTNDDIRQAILSLGAPGTFMTQDVNIIQQQIERLPWIQQASVRKQWPDELKIHLV 94 (97) T ss_dssp ------------CCCEEEEESCCSSCCHHHHHHHHTTSCCSSTTTSCHHHHHHHHTSCCSSEEEEEEEEETTTEEEEEEE T ss_pred EEECCHHCCCCCCEEEEEEECCCEECCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHCCCCEEEEEEEEECCCCEEEEEE T ss_conf 77000110367851599997986027999999998731578853997799999999719983699999957996699996 Q ss_pred EC Q ss_conf 36 Q gi|254780772|r 112 ER 113 (781) Q Consensus 112 e~ 113 (781) |+ T Consensus 95 Er 96 (97) T 2vh2_A 95 EY 96 (97) T ss_dssp EC T ss_pred EC T ss_conf 04 No 21 >>2vh1_A FTSQ, cell division protein FTSQ; potra, membrane, septation, cell cycle, transmembrane, inner membrane; 2.7A {Escherichia coli} (A:1-71) Probab=96.89 E-value=0.0062 Score=36.04 Aligned_cols=66 Identities=14% Similarity=0.224 Sum_probs=57.1 Q ss_pred EEEEEEECC-CCCCHHHHHHH-CCCCCCCCCCHHHHHHHHHHHHH-CCCCCEEEEEEE-CCEEEEEEEEC Q ss_conf 858999665-00798899997-48789882688999999999996-798003899986-99899999936 Q gi|254780772|r 48 VRRIEIRGA-TNVGKEVILSR-IPVVVGQSISDADLDHAVKNIYA-MGYFSNVKIKIV-DSVLIIDLIER 113 (781) Q Consensus 48 i~~I~i~G~-~~i~~~~i~~~-~~~~~G~~~~~~~i~~~i~~l~~-~g~F~~v~~~~~-~~~l~~~v~e~ 113 (781) |++|.|.|+ ++++.+.|+.. .++..|+.+-.-++++.-.+|-+ ..+.++|+|... .+.|.+.|+|+ T Consensus 1 I~~i~V~G~~~~v~~~~I~~~i~~~~~~~~~~~~d~~~i~~~l~~~lpwV~~v~V~r~~P~~l~I~v~Er 70 (71) T 2vh1_A 1 MSKLVLTGERHYTRNDDIRQSILALGEPGTFMTQDVNIIQTQIEQRLPWIKQVSVRKQWPDELKIHLVEY 70 (71) T ss_dssp -CEEEEESCCSSCCHHHHHHHHHTTSCTTCGGGSCHHHHHHHHHHHCTTEEEEEEEEETTTEEEEEEEEC T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHCCCHHHEEEEEEECCCCEEEEEEEE T ss_conf 9579996987108899999998732478860451799999999853985239999952899569999952 No 22 >>2vh2_A FTSQ, cell division protein FTSQ; potra, cell cycle; 3.4A {Yersinia enterocolitica} (A:1-97) Probab=87.07 E-value=0.14 Score=27.12 Aligned_cols=56 Identities=13% Similarity=0.252 Sum_probs=35.1 Q ss_pred CEEECCCCCCCC-CCCCCCCHHH-CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 011003333432-0033210010-0100000001234445666776510123445332 Q gi|254780772|r 365 LYVKRIEIEGND-QSYDSVIRRE-LELSEGDPINYSMIERAKRRIMATGYFSEVNISQ 420 (781) Q Consensus 365 ~~i~~I~I~GN~-~T~d~VIrre-l~~~~Gd~~~~~~i~~s~~~L~~lg~F~~V~i~~ 420 (781) +.+.+|.|.||. .+.+..|+.. ..+.+|+.+=.-+.++-.++|.++...++|.+.- T Consensus 26 ~~i~~I~V~G~~~~~~~~~i~~~~~~~~~g~~~~~id~~~~~~~l~~~p~V~~a~V~r 83 (97) T 2vh2_A 26 LPLSKLVVTGERHYTTNDDIRQAILSLGAPGTFMTQDVNIIQQQIERLPWIQQASVRK 83 (97) T ss_dssp -CCCEEEEESCCSSCCHHHHHHHHTTSCCSSTTTSCHHHHHHHHTSCCSSEEEEEEEE T ss_pred CCEEEEEEECCCEECCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHCCCCEEEEEEEE T ss_conf 8515999979860279999999987315788539977999999997199836999999 No 23 >>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A* (A:245-337) Probab=63.53 E-value=3.8 Score=17.81 Aligned_cols=12 Identities=25% Similarity=0.620 Sum_probs=4.1 Q ss_pred CCCEECCCCCCH Q ss_conf 996211210000 Q gi|254780772|r 310 SGNLYNPQEIKE 321 (781) Q Consensus 310 ~G~~~~~~~~~~ 321 (781) .|.+|+.+.+.+ T Consensus 54 ~G~~y~~~~i~~ 65 (93) T 3a7r_A 54 QGCLYRADMLQQ 65 (93) T ss_dssp TTCBSSHHHHHH T ss_pred CCCCCCHHHHHH T ss_conf 799878999999 No 24 >>2fna_A Conserved hypothetical protein; 13814777, structural genomics, joint center for structural genomics, JCSG; HET: MSE ADP; 2.00A {Sulfolobus solfataricus P2} (A:286-357) Probab=61.20 E-value=5.3 Score=16.86 Aligned_cols=35 Identities=11% Similarity=0.218 Sum_probs=26.8 Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCE Q ss_conf 89999748789882688999999999996798003 Q gi|254780772|r 62 EVILSRIPVVVGQSISDADLDHAVKNIYAMGYFSN 96 (781) Q Consensus 62 ~~i~~~~~~~~G~~~~~~~i~~~i~~l~~~g~F~~ 96 (781) +.|+..+..+.|.++++..++..+++|-++||... T Consensus 21 s~IK~yle~~~G~~I~d~~ls~lL~nL~k~~~iek 55 (72) T 2fna_A 21 SDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIK 55 (72) T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEE T ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEE T ss_conf 13999999974279998999999999997797899 No 25 >>1vqz_A Lipoate-protein ligase, putative; NP_345629.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.99A {Streptococcus pneumoniae TIGR4} (A:252-341) Probab=53.62 E-value=4 Score=17.69 Aligned_cols=12 Identities=8% Similarity=0.063 Sum_probs=4.7 Q ss_pred CEEEEEEECCCC Q ss_conf 046655412333 Q gi|254780772|r 351 RIVDIEYLIDQG 362 (781) Q Consensus 351 ~~vdi~~~I~eg 362 (781) ++|++.++|..| T Consensus 18 G~ve~~l~v~~G 29 (90) T 1vqz_A 18 GKVEVFANVTES 29 (90) T ss_dssp EEEEEEEEEETT T ss_pred CEEEEEEEEECC T ss_conf 379999998169 No 26 >>2k4v_A Uncharacterized protein PA1076; structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} (A:) Probab=33.33 E-value=11 Score=14.84 Aligned_cols=20 Identities=35% Similarity=0.642 Sum_probs=16.0 Q ss_pred CHHHCCCCCCCHHHHHHHHH Q ss_conf 00100100000001234445 Q gi|254780772|r 383 IRRELELSEGDPINYSMIER 402 (781) Q Consensus 383 Irrel~~~~Gd~~~~~~i~~ 402 (781) ||+.|.++|||+.+...+++ T Consensus 102 IR~KL~~kpGepV~~ehler 121 (125) T 2k4v_A 102 IRAKLHAHPGEPVDLERIIR 121 (125) T ss_dssp HHHHHHSSCCCCCTHHHHHC T ss_pred HHHHCCCCCCCCCCHHHHHH T ss_conf 99980889999888767530 No 27 >>1p4t_A Outer membrane protein NSPA; beta barrel; HET: CXE; 2.55A {Neisseria meningitidis} (A:) Probab=32.11 E-value=21 Score=12.90 Aligned_cols=26 Identities=8% Similarity=0.045 Sum_probs=14.2 Q ss_pred CCEEEEEEEEEEEE-CCCCCEEEEEEE Q ss_conf 64247999999975-570015899887 Q gi|254780772|r 735 SFWRVSTGVEIMWN-SPLGMMGVYYGI 760 (781) Q Consensus 735 ~~~r~s~G~Glr~~-tP~Gpirld~a~ 760 (781) ..+...+|+|+.+. +|---++++|-+ T Consensus 104 ~~~~~~~g~G~~y~i~~~~~~~~~y~y 130 (155) T 1p4t_A 104 TSIGLGVLTGVSYAVTPNVDLDAGYRY 130 (155) T ss_dssp CEEEEEEEEEEEEEEETTEEEEEEEEE T ss_pred CEEEEEEEEEEEEEECCCEEEEEEEEE T ss_conf 327314731799994589999999999 No 28 >>1ioo_A SF11-RNAse; SELF-incompatibility ribonuclease, hydrolase; HET: NAG BMA MAN; 1.55A {Nicotiana alata} (A:) Probab=24.75 E-value=29 Score=12.07 Aligned_cols=28 Identities=25% Similarity=0.262 Sum_probs=14.3 Q ss_pred CHHHHHHHHHCCCCCEECCCCCCHHHHH Q ss_conf 7677775321169962112100000000 Q gi|254780772|r 298 QKKTLLSLIRIRSGNLYNPQEIKESSEK 325 (781) Q Consensus 298 ~~~~l~~~~~~k~G~~~~~~~~~~~~~~ 325 (781) +...+.+...+.+|..|+...+++++++ T Consensus 116 n~~~~l~~~~i~pg~~~~~~~i~~ai~~ 143 (196) T 1ioo_A 116 DLLRTLQTHRIIPGSSYTFQDIFDAIKT 143 (196) T ss_dssp CHHHHHHHTTCCTTEEECHHHHHHHHHH T ss_pred CHHHHHHHCCCCCCCCCCHHHHHHHHHH T ss_conf 8999999758689984479999999999 No 29 >>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structure funded by NIH; 1.95A {Chlorobium tepidum tls} (A:1-85) Probab=24.51 E-value=29 Score=12.04 Aligned_cols=42 Identities=21% Similarity=0.437 Sum_probs=23.6 Q ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC Q ss_conf 9995654369889988730057863799999999999999999729 Q gi|254780772|r 119 LFFSGNNNLKDDQLKMIVRSRSAAAYDEDTVNADVHNIKQAYASIG 164 (781) Q Consensus 119 i~~~Gn~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~i~~~y~~~G 164 (781) +.|...+-++-++|.+.+ +..+++..+.+..+.+++.|.+.+ T Consensus 15 lLf~~gepls~~~L~~~l----~~~i~~~~i~~~l~~L~~~y~~~~ 56 (85) T 1t6s_A 15 LIFSSEEPVNLQTLSQIT----AHKFTPSELQEAVDELNRDYEATG 56 (85) T ss_dssp HHHHCSSCBCHHHHHHHT----TCCCCHHHHHHHHHHHHHHHHHHT T ss_pred HHHHCCCCCCHHHHHHHH----CCCCCHHHHHHHHHHHHHHHHCCC T ss_conf 997638988999999986----658999999999999999865156 No 30 >>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein- protein interaction; 2.44A {Homo sapiens} (A:) Probab=21.89 E-value=32 Score=11.71 Aligned_cols=25 Identities=8% Similarity=0.102 Sum_probs=10.1 Q ss_pred HHHHHHHHHHHCCCCCEEEEEEECC Q ss_conf 9999999999679800389998699 Q gi|254780772|r 80 DLDHAVKNIYAMGYFSNVKIKIVDS 104 (781) Q Consensus 80 ~i~~~i~~l~~~g~F~~v~~~~~~~ 104 (781) .+.++++.|+..|.|.||.+..+|. T Consensus 15 ~l~~~l~~l~~~~~~~Dv~l~v~~~ 39 (124) T 2ihc_A 15 NVLLSLNDQRKKDVLCDVTIFVEGQ 39 (124) T ss_dssp HHHHHHHHHHHHTCSCCEEEEETTE T ss_pred HHHHHHHHHHHCCCCEEEEEEECCE T ss_conf 9999999998369968899999998 No 31 >>2sak_A Staphylokinase; plasminogen activation, fibrinolysis, hydrolase, plasminogen activator; 1.80A {Staphylococcus aureus} (A:) Probab=21.32 E-value=31 Score=11.85 Aligned_cols=45 Identities=22% Similarity=0.291 Sum_probs=25.5 Q ss_pred CCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHH-HHHHH--HCCCCCCCC Q ss_conf 343200332100100100000001234445666-77651--012344533 Q gi|254780772|r 373 EGNDQSYDSVIRRELELSEGDPINYSMIERAKR-RIMAT--GYFSEVNIS 419 (781) Q Consensus 373 ~GN~~T~d~VIrrel~~~~Gd~~~~~~i~~s~~-~L~~l--g~F~~V~i~ 419 (781) .||....++.+ ++++++|+.++...|.+-.+ .|... +-|+-|.+. T Consensus 20 ~g~~il~P~Y~--ei~l~~G~t~~keeil~~Vq~~idas~~~~fkvV~~~ 67 (121) T 2sak_A 20 KGNELLSPHYV--EFPIKPGTTLTKEKIEYYVEWALDATAYKEFRVVELD 67 (121) T ss_dssp TCCEEEEEEEE--EEECCTTCEECHHHHHHHHHHHHTTSTTTTCEEEEEC T ss_pred CCCEEECCCCE--EEECCCCCEECHHHHHHHHHHHHHHHHCCCEEEEECC T ss_conf 99889555207--8864768463699999999987433104635788517 No 32 >>1kmo_A FECA, iron(III) dicitrate transport protein FECA; membrane protein, iron transporter, TONB-dependent receptor, siderophore; HET: LDA HTO; 2.00A {Escherichia coli K12} (A:) Probab=21.22 E-value=23 Score=12.67 Aligned_cols=22 Identities=9% Similarity=0.292 Sum_probs=8.9 Q ss_pred EEEEEEEEEECCCCCEEEEEEE Q ss_conf 7999999975570015899887 Q gi|254780772|r 739 VSTGVEIMWNSPLGMMGVYYGI 760 (781) Q Consensus 739 ~s~G~Glr~~tP~Gpirld~a~ 760 (781) ..+.+|.++..+-..+.+.+.. T Consensus 717 ~d~~~~y~~~~~~~~~~~~~~v 738 (774) T 1kmo_A 717 WGARVAYDFGPQMADLNLAFGV 738 (774) T ss_dssp EEEEEEEECCTTTTCCEEEEEE T ss_pred EEEEEEEEECCCCCCEEEEEEE T ss_conf 9999999936888888999999 No 33 >>1c76_A Staphylokinase, SAK; beta-grAsp family; 2.25A {Staphylococcus aureus} (A:) Probab=21.06 E-value=33 Score=11.70 Aligned_cols=44 Identities=23% Similarity=0.294 Sum_probs=25.7 Q ss_pred CCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHH-HHHHH--HCCCCCCC Q ss_conf 343200332100100100000001234445666-77651--01234453 Q gi|254780772|r 373 EGNDQSYDSVIRRELELSEGDPINYSMIERAKR-RIMAT--GYFSEVNI 418 (781) Q Consensus 373 ~GN~~T~d~VIrrel~~~~Gd~~~~~~i~~s~~-~L~~l--g~F~~V~i 418 (781) .||....++.+ ++++.+|+.++...|.+-.+ .|... +-|+-|.+ T Consensus 35 ~g~~ilsP~Y~--ei~L~~G~tltkeeil~~Vq~~idas~~~~fkvV~~ 81 (136) T 1c76_A 35 KGNELLSPHYV--EFPIKPGTTLTKEKIEYYVEWALDATAYKEFRVVEL 81 (136) T ss_dssp TCCEEECCCCE--EEECCTTCEECHHHHHHHHHHHHTTSTTTTEEEEEE T ss_pred CCCEEECCCCE--EEECCCCCEECHHHHHHHHHHHHHHHHCCCEEEEEC T ss_conf 99889545207--886476846269999999998643310463478851 No 34 >>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanococcus jannaschii} (A:1-209,A:275-326) Probab=20.66 E-value=34 Score=11.55 Aligned_cols=13 Identities=15% Similarity=0.542 Sum_probs=4.9 Q ss_pred HHHHHHHHHHHHH Q ss_conf 0123444566677 Q gi|254780772|r 395 INYSMIERAKRRI 407 (781) Q Consensus 395 ~~~~~i~~s~~~L 407 (781) ||.+.++.+.++| T Consensus 231 f~~~r~~~~~~~~ 243 (261) T 1a76_A 231 FNYDRVKKHVDKL 243 (261) T ss_dssp CCHHHHHHHHHHH T ss_pred CCHHHHHHHHHHH T ss_conf 9999999999999 No 35 >>1qjp_A Outer membrane protein A; HET: C8E; 1.65A {Escherichia coli} (A:) Probab=20.17 E-value=35 Score=11.48 Aligned_cols=26 Identities=8% Similarity=-0.072 Sum_probs=13.8 Q ss_pred EEEEEEEEEEEE-CCCCCEEEEEEEEC Q ss_conf 247999999975-57001589988722 Q gi|254780772|r 737 WRVSTGVEIMWN-SPLGMMGVYYGIPL 762 (781) Q Consensus 737 ~r~s~G~Glr~~-tP~Gpirld~a~pl 762 (781) +...+|+|+.|. +|---++++|-+-. T Consensus 119 ~~~~~g~G~~y~l~~~~~i~~e~~~~~ 145 (171) T 1qjp_A 119 VSPVFAGGVEYAITPEIATRLEYQWTN 145 (171) T ss_dssp EEEEEEEEEEEEEETTEEEEEEEEEEC T ss_pred EEEEEEEEEEEEECCCEEEEEEEEEEE T ss_conf 325888279999359979999999997 No 36 >>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus} (A:556-627,A:754-826) Probab=20.05 E-value=35 Score=11.47 Aligned_cols=10 Identities=30% Similarity=0.561 Sum_probs=3.2 Q ss_pred EEEEEECCCC Q ss_conf 6655412333 Q gi|254780772|r 353 VDIEYLIDQG 362 (781) Q Consensus 353 vdi~~~I~eg 362 (781) ++|.+.=.++ T Consensus 24 v~l~v~~~~~ 33 (145) T 2b39_A 24 ITLKIEADQG 33 (145) T ss_dssp EEEEEEECTT T ss_pred EEEEEEECCC T ss_conf 9999995589 No 37 >>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} (A:) Probab=20.04 E-value=35 Score=11.47 Aligned_cols=20 Identities=5% Similarity=0.242 Sum_probs=6.9 Q ss_pred HHHHHHHHHCCCCCEEEEEE Q ss_conf 99999999679800389998 Q gi|254780772|r 82 DHAVKNIYAMGYFSNVKIKI 101 (781) Q Consensus 82 ~~~i~~l~~~g~F~~v~~~~ 101 (781) .+.+++|++.|.|+||.+.. T Consensus 13 ~~~l~~l~~~~~~~Dv~i~v 32 (135) T 2yy9_A 13 LQELNKQREKGQYCDATLDV 32 (135) T ss_dssp HHHHHHHHHTTTTCCEEEEE T ss_pred HHHHHHHHHCCCCEEEEEEE T ss_conf 99999999429951289999 Done!