Query         gi|254780772|ref|YP_003065185.1| surface antigen (D15) [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 781
No_of_seqs    308 out of 3546
Neff          8.7 
Searched_HMMs 33803
Date          Wed Jun  1 14:11:57 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780772.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2qdz_A TPSB transporter FHAC; 100.0 1.2E-36 3.4E-41  256.8  23.3  316  440-781    50-390 (390)
  2 >2qdz_A TPSB transporter FHAC;  99.9 2.5E-25 7.3E-30  182.7   1.3  163  271-440     2-164 (164)
  3 >3efc_A OMP85, outer membrane   99.9 1.5E-23 4.4E-28  171.0   3.0  146  282-428     1-146 (148)
  4 >2qdz_A TPSB transporter FHAC;  99.8 9.6E-20 2.8E-24  146.1   5.9  162  182-362     2-163 (164)
  5 >3efc_A OMP85, outer membrane   99.7 1.2E-17 3.7E-22  132.3   4.9  134  115-260     3-138 (148)
  6 >2qdf_A OMP85, outer membrane   99.7 5.7E-17 1.7E-21  127.9   5.3   88  194-281     2-91  (91)
  7 >3efc_A OMP85, outer membrane   99.6 1.3E-16   4E-21  125.5   4.4   89  193-281     2-92  (92)
  8 >2qdf_A OMP85, outer membrane   99.5   1E-13   3E-18  106.7   8.7   79  114-192     1-82  (82)
  9 >3efc_A OMP85, outer membrane   99.5   2E-13 5.9E-18  104.7   9.6   79  113-191     1-82  (82)
 10 >2qdf_A OMP85, outer membrane   99.4 6.7E-13   2E-17  101.3   9.9   74   40-113     2-75  (75)
 11 >2qdf_A OMP85, outer membrane   99.4 4.3E-14 1.3E-18  109.1   3.0   84  114-197     2-86  (87)
 12 >2qdf_A OMP85, outer membrane   99.4 3.3E-12 9.8E-17   96.7  10.3   87  282-369     1-87  (87)
 13 >3efc_A OMP85, outer membrane   99.4 2.4E-12 7.1E-17   97.7   7.8   72   41-112     2-73  (73)
 14 >2qdf_A OMP85, outer membrane   99.2 4.3E-11 1.3E-15   89.5   8.1   78  115-192     3-91  (91)
 15 >2qdf_A OMP85, outer membrane   99.2 2.1E-11 6.1E-16   91.5   5.5   81  195-281     2-82  (82)
 16 >3efc_A OMP85, outer membrane   99.2 1.9E-11 5.5E-16   91.8   5.0   80  113-192     2-92  (92)
 17 >3efc_A OMP85, outer membrane   99.2 4.1E-11 1.2E-15   89.6   5.9   82  193-280     1-82  (82)
 18 >3efc_A OMP85, outer membrane   99.1   1E-11 3.1E-16   93.5   1.8   72  360-438     2-73  (73)
 19 >2qdf_A OMP85, outer membrane   99.1 1.2E-11 3.6E-16   93.1   1.3   73  360-439     3-75  (75)
 20 >2vh2_A FTSQ, cell division pr  97.8 7.6E-05 2.2E-09   48.6   6.8   79   35-113    15-96  (97)
 21 >2vh1_A FTSQ, cell division pr  96.9  0.0062 1.8E-07   36.0   8.0   66   48-113     1-70  (71)
 22 >2vh2_A FTSQ, cell division pr  87.1    0.14 4.3E-06   27.1   0.1   56  365-420    26-83  (97)
 23 >3a7r_A Lipoate-protein ligase  63.5     3.8 0.00011   17.8   1.8   12  310-321    54-65  (93)
 24 >2fna_A Conserved hypothetical  61.2     5.3 0.00016   16.9   2.2   35   62-96     21-55  (72)
 25 >1vqz_A Lipoate-protein ligase  53.6       4 0.00012   17.7   0.5   12  351-362    18-29  (90)
 26 >2k4v_A Uncharacterized protei  33.3      11 0.00032   14.8   0.1   20  383-402   102-121 (125)
 27 >1p4t_A Outer membrane protein  32.1      21 0.00063   12.9  10.3   26  735-760   104-130 (155)
 28 >1ioo_A SF11-RNAse; SELF-incom  24.7      29 0.00085   12.1   3.8   28  298-325   116-143 (196)
 29 >1t6s_A Conserved hypothetical  24.5      29 0.00086   12.0   1.1   42  119-164    15-56  (85)
 30 >2ihc_A Transcription regulato  21.9      32 0.00096   11.7   3.3   25   80-104    15-39  (124)
 31 >2sak_A Staphylokinase; plasmi  21.3      31 0.00092   11.8   0.7   45  373-419    20-67  (121)
 32 >1kmo_A FECA, iron(III) dicitr  21.2      23 0.00069   12.7   0.0   22  739-760   717-738 (774)
 33 >1c76_A Staphylokinase, SAK; b  21.1      33 0.00097   11.7   0.7   44  373-418    35-81  (136)
 34 >1a76_A Flap endonuclease-1 pr  20.7      34   0.001   11.6   2.0   13  395-407   231-243 (261)
 35 >1qjp_A Outer membrane protein  20.2      35   0.001   11.5  10.6   26  737-762   119-145 (171)
 36 >2b39_A C3; thioester, immune   20.0      35   0.001   11.5   1.3   10  353-362    24-33  (145)
 37 >2yy9_A Zinc finger and BTB do  20.0      35   0.001   11.5   3.7   20   82-101    13-32  (135)

No 1  
>>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} (A:1-45,A:210-554)
Probab=100.00  E-value=1.2e-36  Score=256.80  Aligned_cols=316  Identities=13%  Similarity=0.083  Sum_probs=228.1

Q ss_pred             CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEECC------CCEEEEEEEECCCCCCCCCCCCCCCCCC-
Q ss_conf             211111111122332110000011123332344220037874112------2111134541123577754310011113-
Q gi|254780772|r  440 SAGSVGIATNYEVDKGMGVEGHIDDNNFFGQGYRARLAAGFGRHA------VQNYTFSVEDPYFLGSPISAGFDLQKTH-  512 (781)
Q Consensus       440 ~tg~~~~g~gys~~~g~~~~~~~~~~Nl~G~G~~l~l~~~~~~~~------~~~~~~s~~~P~~~~~~~s~~~~~~~~~-  512 (781)
                      .++.+..++||++..++.+.++++++|++|.|+.+++.+..+...      .+.+.++|..|+................ 
T Consensus        50 ~~~~~~~g~g~~~~~~~~~~~~~~~~nl~g~g~~~~~~~~~s~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~  129 (390)
T 2qdz_A           50 SLGMDNSGPGTPENGRYKYNASVTANDLLGLNDTLGLYIGNRYYRDAGHDAERNYDLMYSVPLGRTRLDLQTGYSTYRNL  129 (390)
T ss_dssp             EEEEEECSCSSSCSSCEEEEEEEEEECSSSSSCEEEEEEEEECCSCCSSCEEEEEEEEEEEEETTEEEEEEEEEEEEECC
T ss_pred             CCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEEEC
T ss_conf             33334345774456740366667763567877368999872443355555521234552023332114888776541000


Q ss_pred             ----CCCCCCCCCCCCCEEEEEEECCCCEEEE--ECCCEEEEEEECCCCCCCCCHHHHHHHCCCCCEEEEEEEEECCCCC
Q ss_conf             ----3333343233320245542025430235--4041257764014675442011122101585024678843215542
Q gi|254780772|r  513 ----LEDGSLDINDESAAVRMIVPITESISTS--FKYDLRFLQYGAISEKEKIPSIYTTLIEHGKFSSHSISQSIIYNTL  586 (781)
Q Consensus       513 ----~~~~~y~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~dtr  586 (781)
                          .....+........+.+++++.......  +++.+.+...........      ............+...+.++.+
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~  203 (390)
T 2qdz_A          130 LKTRYGQYQSAGNSRSFGLKATRLLYRDTRSQFSVYGGLKLRQNKNYLAGTR------LDVSSKHYSDVTVGMQYSTQRG  203 (390)
T ss_dssp             CSSSSCCCCCEEEEEEEEEEEEEEEECCSSEEEEEEEEEEEEEEEEECCTTS------CCCEEEEEEEEEEEEEEEEECS
T ss_pred             CCCCCCCEECCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEEECCEECCCCC------CCCCCEEEEEEEEEEEEEEECC
T ss_conf             3565421001330369987887642026745688988899987100026731------1135404667888654688846


Q ss_pred             CCCCCCCCCEEEEEEECC------CCCCCCCEEEEEEEEEEEEEEECCCE-EEEEEEEEEEEEEECCCCCCCCHHEEEEC
Q ss_conf             011002465156542024------56555420366663004799935880-99999999789851699741230127507
Q gi|254780772|r  587 DNPIVPRKGMLISSSYDY------AGFGGDSQYHRIGSRASYFYLLSDDS-DIVGSLRFGYGCVIPSNKNLQLFDQFSVS  659 (781)
Q Consensus       587 D~~~~Pt~G~~~~~~~~~------a~~g~d~~f~k~~~~~~~y~~l~~~~-~l~~~~~~g~~~~~~~~~~lp~~erF~lG  659 (781)
                      |+..+|+.|+........      ..++++.+|.++.+++++|+|+.... .+.+..  +++... .++.+|++++|++|
T Consensus       204 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~-~~~~lp~~~~f~lG  280 (390)
T 2qdz_A          204 ANAYFGDLSFTRGVGVNNGKYAAYDERGPQGNVSRFNGSLAWTRYMALAGQPIQWAS--QLGFQY-SRQQLLNSYQITVG  280 (390)
T ss_dssp             SEEEEEEEEEEECCCC--------------CCCEEEEEEEEEEEEEEETTEEEEEEE--EEEEEE-CSSCSSSSEECCSC
T ss_pred             CCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCEEEEE--EEEEEE-CCCCCCCCCEEEEC
T ss_conf             860414434212543345544332356787735999999999986024566402688--998886-68877754369857


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCC--CCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCE
Q ss_conf             897140212686155037997222147899999999614565--654537999999767741566667754445676642
Q gi|254780772|r  660 SNYYLRGFAYKGIGPRVDKKYAIGGKIYSSASAAVSFPMPLV--PERAGLRGAFFVDSATLYANHVALGADKLEGNDSFW  737 (781)
Q Consensus       660 G~~svRGy~~~~iGP~~~~~~~~GG~~~~~~s~E~r~pl~~~--~~~~~l~~~~F~D~G~v~~~~~~~~~~~~~~~~~~~  737 (781)
                      |.++||||..+.+         .+|+.++.+++|||+|++..  .....+++++|+|+|+||+.......        .+
T Consensus       281 G~~~lRGy~~~~~---------~~Gd~~~~~~~Elr~~l~~~~~~~~~~l~~~~F~D~G~v~~~~~~~~~--------~~  343 (390)
T 2qdz_A          281 DEYTVRGYNLRTS---------QSGDSGVYLSNTLTVPVQFSLLGKQASVAPFVGADVGALKSNHPDART--------IR  343 (390)
T ss_dssp             CCCCCTTCCCCCS---------CCSSCSSCCEESEEEEEEEEEEECCSSCEEEEEEEEEEEECSSSSCCE--------EE
T ss_pred             CCCCEECCCCCCC---------CCCCCEEEEEEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCCCCC--------CE
T ss_conf             9985726178985---------464436999999999754545667625999999999995357888888--------76


Q ss_pred             EEEEEEEEEEECCCCCEEEEEEEECCCCCCC---EEEEEEEEEEECC
Q ss_conf             4799999997557001589988722677876---0258999641059
Q gi|254780772|r  738 RVSTGVEIMWNSPLGMMGVYYGIPLRHREGD---KIQQFGFRIGNRM  781 (781)
Q Consensus       738 r~s~G~Glr~~tP~Gpirld~a~pl~~~~~D---~~~~f~FsiG~~f  781 (781)
                      +.|+|+||||.+|+|||||+||+|+++.+++   ...+|+|+||+.|
T Consensus       344 ~~s~G~Glr~~~~~~~l~l~~a~~l~~~~~~~~~~~~~~~f~ig~~F  390 (390)
T 2qdz_A          344 MAGLAAGVRFDLPYARMSFTYSKPVGAQPGGAPRAPVWLYINAGLSF  390 (390)
T ss_dssp             EEEEEEEEEECCSSEEEEEEEEEECSCSCSSSCCCCSEEEEEEEEEC
T ss_pred             EEEEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEC
T ss_conf             99999999999388789999998767898887688659999998289


No 2  
>>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} (A:46-209)
Probab=99.90  E-value=2.5e-25  Score=182.67  Aligned_cols=163  Identities=10%  Similarity=-0.047  Sum_probs=148.9

Q ss_pred             CCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             41012202222100000123334445576777753211699621121000000000000234456420112332234344
Q gi|254780772|r  271 YVLIFQIDEGEIYTVGNISIQSTLQEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVRVKTRINRDFAK  350 (781)
Q Consensus       271 ~~i~~~I~EG~~y~i~~i~i~g~~~~~~~~~l~~~~~~k~G~~~~~~~~~~~~~~i~~~y~~~GY~fa~v~~~~~~d~~~  350 (781)
                      ++|+|.|+||++|+|++|.|.|+ ..++.+.|.+.+.+++|++|+...++++.++|.+.|.++||++++|.+..   ...
T Consensus         2 v~i~~~i~eg~~~~i~~i~i~G~-~~~~~~~l~~~~~~~~g~~~~~~~l~~~~~~i~~~y~~~Gy~~a~v~~~~---~~~   77 (164)
T 2qdz_A            2 PARKPDATSGHTVTVHAVDLDFG-VEGRLFDPAPLVQDYLNRPLDNEQLFLLVKALSAALYDRGYATSIVTFVP---PGV   77 (164)
T ss_dssp             ------CBCCCSSSSCCEEEECC-SSSCCCSCSTTSTTSSSSCBCSTTHHHHHHHHHHHHHHTTCTTCEEEEEE---EEE
T ss_pred             CCCCCCCCCCCEEEEEEEEEECC-CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECC---CCC
T ss_conf             76445689885399999999588-65898999987675069805899999999999999997898457977225---666


Q ss_pred             CEEEEEEECCCCCCCEEECCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             04665541233322011003333432003321001001000000012344456667765101234453325443565431
Q gi|254780772|r  351 RIVDIEYLIDQGSPLYVKRIEIEGNDQSYDSVIRRELELSEGDPINYSMIERAKRRIMATGYFSEVNISQLPANDVSDYV  430 (781)
Q Consensus       351 ~~vdi~~~I~eg~~~~i~~I~I~GN~~T~d~VIrrel~~~~Gd~~~~~~i~~s~~~L~~lg~F~~V~i~~~~~~~~~~~v  430 (781)
                      ..+++.+.|.||++++++.|.+.||.++++.++++.++++||++|+...++++.++|+++|+|++|++.+.+   .++.+
T Consensus        78 ~~~~v~~~v~eG~~~~i~~i~~~g~~~~~~~~l~~~~~~~~g~~~~~~~l~~~~~~l~~~g~f~~v~i~~~~---~~~~~  154 (164)
T 2qdz_A           78 VDGVLKLKVEWGRIKGWLIDGKPLEGTRDRMMVFSAMPGWQDKVLNVFDIDQAIYNINNGGKTGNITIVPAD---EYGYS  154 (164)
T ss_dssp             ETTEEEEEEECCEEEEEEETTEECCSHHHHHHHHHHSTTCTTCBCCHHHHHHHHHHHCSSSEEEEEEEEECS---STTEE
T ss_pred             CCCEEEEEEEEEEEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC---CCCCC
T ss_conf             664799999996676699974267662266667765666778845767899999986474763169985188---78863


Q ss_pred             CCCCCCCCCC
Q ss_conf             0233221122
Q gi|254780772|r  431 ILRVSVKQLS  440 (781)
Q Consensus       431 dl~i~v~E~~  440 (781)
                      +|.++|+|+.
T Consensus       155 ~i~~~v~Ers  164 (164)
T 2qdz_A          155 YLDLQLQRRA  164 (164)
T ss_dssp             EEEEEEEECC
T ss_pred             CCEEEEEECC
T ss_conf             2102235413


No 3  
>>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane; 3.30A {Escherichia coli} (A:248-395)
Probab=99.87  E-value=1.5e-23  Score=171.02  Aligned_cols=146  Identities=25%  Similarity=0.445  Sum_probs=139.2

Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf             10000012333444557677775321169962112100000000000023445642011233223434404665541233
Q gi|254780772|r  282 IYTVGNISIQSTLQEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVRVKTRINRDFAKRIVDIEYLIDQ  361 (781)
Q Consensus       282 ~y~i~~i~i~g~~~~~~~~~l~~~~~~k~G~~~~~~~~~~~~~~i~~~y~~~GY~fa~v~~~~~~d~~~~~vdi~~~I~e  361 (781)
                      ||+|++|.|+|+ ..++.+++.+.+.+++|++|+...++++.++|.++|.++||++++|.+.+..+.+++++++.+.+.+
T Consensus         1 r~~i~~I~i~G~-~~~~~~~l~~~~~~~~g~~~~~~~i~~~~~~l~~~y~~~Gy~~a~v~~~~~~~~~~~~~~i~~~v~~   79 (148)
T 3efc_A            1 QYKLSGVEVSGN-LAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKTVKLRVNVDA   79 (148)
T ss_dssp             CCEEEEECCBSC-CTTCHHHHHHTCCCCSSCBCCHHHHHHHHHHHHHHHHHTTCSSCEEEEEEEEETTTTEEEEEEEEEC
T ss_pred             EEEEEEEEEECC-CCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEEEEEECC
T ss_conf             278877664057-3233201222210100111025666556678899998607542113552044267868999999843


Q ss_pred             CCCCEEECCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             3220110033334320033210010010000000123444566677651012344533254435654
Q gi|254780772|r  362 GSPLYVKRIEIEGNDQSYDSVIRRELELSEGDPINYSMIERAKRRIMATGYFSEVNISQLPANDVSD  428 (781)
Q Consensus       362 g~~~~i~~I~I~GN~~T~d~VIrrel~~~~Gd~~~~~~i~~s~~~L~~lg~F~~V~i~~~~~~~~~~  428 (781)
                      |++++|++|.|.||.++++.+|++.+.++||++|+..++++++++|+++++|++|++.+.+.++.++
T Consensus        80 g~~~~i~~i~i~G~~~~~~~~i~~~~~~~~g~~~~~~~i~~~~~~l~~~~~f~~v~v~~~~~~~~~~  146 (148)
T 3efc_A           80 GNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVDQGKERLNRLGFFETVDTDTQRVPGSPD  146 (148)
T ss_dssp             CCCCCC-------------------------------------------------------------
T ss_pred             CCCEEEEEEEEECCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
T ss_conf             8818999999989885755541210036998547999999999999847997610446403899989


No 4  
>>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} (A:46-209)
Probab=99.79  E-value=9.6e-20  Score=146.10  Aligned_cols=162  Identities=12%  Similarity=0.016  Sum_probs=136.5

Q ss_pred             EEEEEEEECCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             25889860366324677875044311012222111001221124456664310233334578888887542322100123
Q gi|254780772|r  182 LNITYVIEEGVKAKINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYHDRGYAAVKVSSQ  261 (781)
Q Consensus       182 v~i~~~I~EG~~~~I~~I~f~Gn~~f~~~~L~~~~~~k~~~~~~~~~~~~~~~~~l~~D~~~l~~~Y~~~GY~d~~V~~~  261 (781)
                      |+|+|+|+||+++.|++|.|+||+.+++.+|.+.+..++.        +.|+.+.++.+.++|+++|+++||++++|..+
T Consensus         2 v~i~~~i~eg~~~~i~~i~i~G~~~~~~~~l~~~~~~~~g--------~~~~~~~l~~~~~~i~~~y~~~Gy~~a~v~~~   73 (164)
T 2qdz_A            2 PARKPDATSGHTVTVHAVDLDFGVEGRLFDPAPLVQDYLN--------RPLDNEQLFLLVKALSAALYDRGYATSIVTFV   73 (164)
T ss_dssp             ------CBCCCSSSSCCEEEECCSSSCCCSCSTTSTTSSS--------SCBCSTTHHHHHHHHHHHHHHTTCTTCEEEEE
T ss_pred             CCCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf             7644568988539999999958865898999987675069--------80589999999999999999789845797722


Q ss_pred             CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEECCCCCCHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             10124555541012202222100000123334445576777753211699621121000000000000234456420112
Q gi|254780772|r  262 VLFDKQKSGYVLIFQIDEGEIYTVGNISIQSTLQEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVRVK  341 (781)
Q Consensus       262 ~~~~~~~~~~~i~~~I~EG~~y~i~~i~i~g~~~~~~~~~l~~~~~~k~G~~~~~~~~~~~~~~i~~~y~~~GY~fa~v~  341 (781)
                      -   .+...+.+++.|.||++++++.+.+.|+ ..++++.+.+.+++++|++|+...++++.++|...    || |..+.
T Consensus        74 ~---~~~~~~~v~~~v~eG~~~~i~~i~~~g~-~~~~~~~l~~~~~~~~g~~~~~~~l~~~~~~l~~~----g~-f~~v~  144 (164)
T 2qdz_A           74 P---PGVVDGVLKLKVEWGRIKGWLIDGKPLE-GTRDRMMVFSAMPGWQDKVLNVFDIDQAIYNINNG----GK-TGNIT  144 (164)
T ss_dssp             E---EEEETTEEEEEEECCEEEEEEETTEECC-SHHHHHHHHHHSTTCTTCBCCHHHHHHHHHHHCSS----SE-EEEEE
T ss_pred             C---CCCCCCEEEEEEEEEEEEEEEEEECCCC-CCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCC----CC-CEEEE
T ss_conf             5---6666647999999966766999742676-62266667765666778845767899999986474----76-31699


Q ss_pred             CCCCCCCCCCEEEEEEECCCC
Q ss_conf             332234344046655412333
Q gi|254780772|r  342 TRINRDFAKRIVDIEYLIDQG  362 (781)
Q Consensus       342 ~~~~~d~~~~~vdi~~~I~eg  362 (781)
                        +.....++.++|.+.|.|+
T Consensus       145 --i~~~~~~~~~~i~~~v~Er  163 (164)
T 2qdz_A          145 --IVPADEYGYSYLDLQLQRR  163 (164)
T ss_dssp             --EEECSSTTEEEEEEEEEEC
T ss_pred             --EECCCCCCCCCCEEEEEEC
T ss_conf             --8518878863210223541


No 5  
>>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane; 3.30A {Escherichia coli} (A:248-395)
Probab=99.70  E-value=1.2e-17  Score=132.26  Aligned_cols=134  Identities=17%  Similarity=0.253  Sum_probs=107.1

Q ss_pred             EEEEEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEE-EECCCCCEEEEEEEECCCC
Q ss_conf             365799956543698899887300578637999999999999999997297001799876-4338984258898603663
Q gi|254780772|r  115 IINHLFFSGNNNLKDDQLKMIVRSRSAAAYDEDTVNADVHNIKQAYASIGYLNVMVKVQH-HSISPTTLNITYVIEEGVK  193 (781)
Q Consensus       115 ~i~~i~~~Gn~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~i~~~y~~~Gy~~a~V~~~~-~~~~~~~v~i~~~I~EG~~  193 (781)
                      .|++|.|+|+..++.++|.+.+.++.|++|+...+++++++|.++|+++||++|.|.+.. ...+.+.+.|.+.|+||++
T Consensus         3 ~i~~I~i~G~~~~~~~~l~~~~~~~~g~~~~~~~i~~~~~~l~~~y~~~Gy~~a~v~~~~~~~~~~~~~~i~~~v~~g~~   82 (148)
T 3efc_A            3 KLSGVEVSGNLAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKTVKLRVNVDAGNR   82 (148)
T ss_dssp             EEEEECCBSCCTTCHHHHHHTCCCCSSCBCCHHHHHHHHHHHHHHHHHTTCSSCEEEEEEEEETTTTEEEEEEEEECCCC
T ss_pred             EEEEEEEECCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEEEEEECCCCC
T ss_conf             88776640573233201222210100111025666556678899998607542113552044267868999999843881


Q ss_pred             EEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHCCC
Q ss_conf             2467787504431101222211100122112445666431023333457888888754232-210012
Q gi|254780772|r  194 AKINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYHDRGYA-AVKVSS  260 (781)
Q Consensus       194 ~~I~~I~f~Gn~~f~~~~L~~~~~~k~~~~~~~~~~~~~~~~~l~~D~~~l~~~Y~~~GY~-d~~V~~  260 (781)
                      ++|.+|.+.||..++++.+++.+..++..        .|+...++.++++|.+    .||+ +++|..
T Consensus        83 ~~i~~i~i~G~~~~~~~~i~~~~~~~~g~--------~~~~~~i~~~~~~l~~----~~~f~~v~v~~  138 (148)
T 3efc_A           83 FYVRKIRFEGNDTSKDAVLRREMRQMEGA--------WLGSDLVDQGKERLNR----LGFFETVDTDT  138 (148)
T ss_dssp             CCC-----------------------------------------------------------------
T ss_pred             EEEEEEEEECCCCCCCHHHHHCCCCCCCC--------CCCHHHHHHHHHHHHH----CCCCCCEEEEE
T ss_conf             89999999898857555412100369985--------4799999999999984----79976104464


No 6  
>>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A (A:158-248)
Probab=99.67  E-value=5.7e-17  Score=127.91  Aligned_cols=88  Identities=31%  Similarity=0.502  Sum_probs=81.9

Q ss_pred             EEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCC
Q ss_conf             246778750443110122221110012211244-5666431023333457888888754232210012-31012455554
Q gi|254780772|r  194 AKINSIRFVGNKNYSHARLERVISIRTSGYFSF-GKTDVYSKERMSFDEEAIRAFYHDRGYAAVKVSS-QVLFDKQKSGY  271 (781)
Q Consensus       194 ~~I~~I~f~Gn~~f~~~~L~~~~~~k~~~~~~~-~~~~~~~~~~l~~D~~~l~~~Y~~~GY~d~~V~~-~~~~~~~~~~~  271 (781)
                      ++|++|.|+||+.||+++|+++|.+++..||++ ..++.|++++++.|+++|+++|+++||+||+|.+ .+..+++++.+
T Consensus         2 ~kI~~I~f~Gn~~~s~~~L~~~i~~k~~~~~~~~~~~~~~~~~~l~~D~~~l~~~Y~~~Gy~da~V~~~~v~~~~~~~~v   81 (91)
T 2qdf_A            2 AEIQQINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGI   81 (91)
T ss_dssp             CEEEEEEEESCCSSCHHHHHGGGSCC--------------CCSCHHHHHHHHHHHHHTTTCTTCEEEEEEEEECTTSSEE
T ss_pred             EEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHEECCCCCC
T ss_conf             00135521145443202344444431001111012454201567777788999999843543246511111100024440


Q ss_pred             CEEEEECCCC
Q ss_conf             1012202222
Q gi|254780772|r  272 VLIFQIDEGE  281 (781)
Q Consensus       272 ~i~~~I~EG~  281 (781)
                      .|+|.|+||+
T Consensus        82 ~I~~~I~EGe   91 (91)
T 2qdf_A           82 YVTVNITEGD   91 (91)
T ss_dssp             EEEEEEECCC
T ss_pred             EEEECCCCCC
T ss_conf             3554113110


No 7  
>>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane; 3.30A {Escherichia coli} (A:156-247)
Probab=99.64  E-value=1.3e-16  Score=125.49  Aligned_cols=89  Identities=30%  Similarity=0.497  Sum_probs=82.4

Q ss_pred             CEEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCC
Q ss_conf             3246778750443110122221110012211244-5666431023333457888888754232210012-3101245555
Q gi|254780772|r  193 KAKINSIRFVGNKNYSHARLERVISIRTSGYFSF-GKTDVYSKERMSFDEEAIRAFYHDRGYAAVKVSS-QVLFDKQKSG  270 (781)
Q Consensus       193 ~~~I~~I~f~Gn~~f~~~~L~~~~~~k~~~~~~~-~~~~~~~~~~l~~D~~~l~~~Y~~~GY~d~~V~~-~~~~~~~~~~  270 (781)
                      +++|++|.|+||+.|++++|++.|.+++.+||++ +.++.|++++++.|+++|+++|+++||++|+|.+ .+..+++++.
T Consensus         2 r~~I~~I~f~Gn~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~D~~~i~~~Y~~~GY~~a~V~~~~~~~~~~~~~   81 (92)
T 3efc_A            2 SAEIQQINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKG   81 (92)
T ss_dssp             CCCCCCCEEESCCSSCTTTTGGGCCCCSSCCSCCSCTTTHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCCEECTTSCS
T ss_pred             CCEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCHHHHHHHHHHHCCEEEEEEECCEEEEECCCCC
T ss_conf             31058984226533320777766542000000001456643310010208899888723675899971224798056774


Q ss_pred             CCEEEEECCCC
Q ss_conf             41012202222
Q gi|254780772|r  271 YVLIFQIDEGE  281 (781)
Q Consensus       271 ~~i~~~I~EG~  281 (781)
                      +.|+|.|+||+
T Consensus        82 v~i~~~I~EGe   92 (92)
T 3efc_A           82 IYVTVNITEGD   92 (92)
T ss_dssp             EECEEEEECCC
T ss_pred             EEEEECCCCCC
T ss_conf             04620133341


No 8  
>>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A (A:76-157)
Probab=99.50  E-value=1e-13  Score=106.70  Aligned_cols=79  Identities=28%  Similarity=0.436  Sum_probs=75.9

Q ss_pred             CEEEEEEEECCCCCCHHHHHHHHH---HCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEEEEEEC
Q ss_conf             536579995654369889988730---05786379999999999999999972970017998764338984258898603
Q gi|254780772|r  114 KIINHLFFSGNNNLKDDQLKMIVR---SRSAAAYDEDTVNADVHNIKQAYASIGYLNVMVKVQHHSISPTTLNITYVIEE  190 (781)
Q Consensus       114 p~i~~i~~~Gn~~~~~~~l~~~~~---~~~g~~~~~~~~~~~~~~i~~~y~~~Gy~~a~V~~~~~~~~~~~v~i~~~I~E  190 (781)
                      |+|++|.|+||+.+++++|++.+.   +++|++|++.++++++++|+++|.++||++|+|++...+.++++|+|+|.|+|
T Consensus         1 P~I~~I~~~Gn~~~~~~~L~~~l~~~~l~~g~~~~~~~l~~~~~~I~~~Y~~~Gy~~a~V~~~~~~~~~~~v~i~~~I~E   80 (82)
T 2qdf_A            1 PTIASITFSGNKSVKDDMLKQNLEASGVRVGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTPLPRNRVDLKLVFQE   80 (82)
T ss_dssp             CEEEEEEEESCCSSCHHHHHHHHHTTTCCTTSBCCTTSHHHHHHHHHHHGGGGTBSSCEEEEEEEEETTTEEEEEEEEEC
T ss_pred             ECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCC
T ss_conf             01133210011111012222221110223456553666666789999988641231110011234332210122101011


Q ss_pred             CC
Q ss_conf             66
Q gi|254780772|r  191 GV  192 (781)
Q Consensus       191 G~  192 (781)
                      |-
T Consensus        81 G~   82 (82)
T 2qdf_A           81 GV   82 (82)
T ss_dssp             CC
T ss_pred             CC
T ss_conf             22


No 9  
>>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane; 3.30A {Escherichia coli} (A:74-155)
Probab=99.49  E-value=2e-13  Score=104.75  Aligned_cols=79  Identities=28%  Similarity=0.435  Sum_probs=76.1

Q ss_pred             CCEEEEEEEECCCCCCHHHHHHHH---HHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEEEEEE
Q ss_conf             653657999565436988998873---00578637999999999999999997297001799876433898425889860
Q gi|254780772|r  113 RKIINHLFFSGNNNLKDDQLKMIV---RSRSAAAYDEDTVNADVHNIKQAYASIGYLNVMVKVQHHSISPTTLNITYVIE  189 (781)
Q Consensus       113 ~p~i~~i~~~Gn~~~~~~~l~~~~---~~~~g~~~~~~~~~~~~~~i~~~y~~~Gy~~a~V~~~~~~~~~~~v~i~~~I~  189 (781)
                      +|.|++|.|+||+.+++++|.+.+   ++++|++|++..+++++++|+++|.++||++|.|++.+.+.+++.|+|+|.|+
T Consensus         1 k~~i~~i~~~Gn~~~~~~~l~~~l~~~~l~~g~~~~~~~l~~~~~~I~~~Y~~~Gy~~a~V~~~~~~~~~~~v~i~~~I~   80 (82)
T 3efc_A            1 RPTIASITFSGNKSVKDDMLKQNLEASGVRVGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTPLPRNRVDLKLVFQ   80 (82)
T ss_dssp             CCEEEEEEEESCTTSCHHHHHHHHHHHTCCSSSCCCGGGHHHHHHHHHHHHHTTTCCSCEEEEECCBCTTSEEEEEEEEE
T ss_pred             CCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCEEEEEEEEE
T ss_conf             45222799984520344454333220144444412466789999999999987285368999887525775167898874


Q ss_pred             CC
Q ss_conf             36
Q gi|254780772|r  190 EG  191 (781)
Q Consensus       190 EG  191 (781)
                      ||
T Consensus        81 EG   82 (82)
T 3efc_A           81 EG   82 (82)
T ss_dssp             CC
T ss_pred             EC
T ss_conf             05


No 10 
>>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A (A:1-75)
Probab=99.45  E-value=6.7e-13  Score=101.29  Aligned_cols=74  Identities=23%  Similarity=0.470  Sum_probs=71.1

Q ss_pred             HHCCCCEEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEEEC
Q ss_conf             51146526858999665007988999974878988268899999999999679800389998699899999936
Q gi|254780772|r   40 VYGSNTSIVRRIEIRGATNVGKEVILSRIPVVVGQSISDADLDHAVKNIYAMGYFSNVKIKIVDSVLIIDLIER  113 (781)
Q Consensus        40 ~~~~~~~~i~~I~i~G~~~i~~~~i~~~~~~~~G~~~~~~~i~~~i~~l~~~g~F~~v~~~~~~~~l~~~v~e~  113 (781)
                      ++.++.+.|.+|.|+||++++++.|+..+++++|++|+.+.+++++++||+||||++|+++.+++.|+|+|+|+
T Consensus         2 ~~~~~~~~i~~I~v~Gn~~~~~~~i~~~l~~k~G~~~s~~~l~~~~~~L~~tg~F~~V~i~~~~~~L~i~v~Er   75 (75)
T 2qdf_A            2 SHMAEGFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDISNTIRALFATGNFEDVRVLRDGDTLLVQVKER   75 (75)
T ss_dssp             --CCCCEECCEEEEESCSSSCHHHHHHTSSCCTTCEECHHHHHHHHHHHHTTSCEEEEEEEEETTEEEEEEEEC
T ss_pred             CCCCCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCEEEEEEEEE
T ss_conf             76567637979999998246999999846899999079999999999999759902699996288799999974


No 11 
>>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A (A:249-335)
Probab=99.43  E-value=4.3e-14  Score=109.06  Aligned_cols=84  Identities=14%  Similarity=0.203  Sum_probs=70.0

Q ss_pred             CEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEC-CCCCEEEEEEEECCC
Q ss_conf             5365799956543698899887300578637999999999999999997297001799876433-898425889860366
Q gi|254780772|r  114 KIINHLFFSGNNNLKDDQLKMIVRSRSAAAYDEDTVNADVHNIKQAYASIGYLNVMVKVQHHSI-SPTTLNITYVIEEGV  192 (781)
Q Consensus       114 p~i~~i~~~Gn~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~i~~~y~~~Gy~~a~V~~~~~~~-~~~~v~i~~~I~EG~  192 (781)
                      -.|.+|.|+||+.++++.|.+.+.+++|++|++..+++++.+|+++|.++||+.|.|.+...+. +++.|+|+|.|+||+
T Consensus         2 y~v~~I~i~Gn~~~~~~~l~~~l~~~~G~~~~~~~l~~~~~~l~~~y~~~Gy~~a~V~~~~~~~~~~~~v~i~~~V~eg~   81 (87)
T 2qdf_A            2 YKLSGVEVSGNLAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKTVKLRVNVDAGN   81 (87)
T ss_dssp             CEEEEEEEEEECTTCHHHHHHHTCCCTTEECCHHHHHHHHHHHHHHHHTTTBSSCEEEEEEEEETTTTEEEEEEEEECCC
T ss_pred             EEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEEEEEEEECC
T ss_conf             36731131157532114567663368999519999999999999999867986038987778848899898999997389


Q ss_pred             CEEEE
Q ss_conf             32467
Q gi|254780772|r  193 KAKIN  197 (781)
Q Consensus       193 ~~~I~  197 (781)
                      +++|+
T Consensus        82 ~~~i~   86 (87)
T 2qdf_A           82 RFYVR   86 (87)
T ss_dssp             BCCCC
T ss_pred             CEEEC
T ss_conf             65755


No 12 
>>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A (A:249-335)
Probab=99.39  E-value=3.3e-12  Score=96.75  Aligned_cols=87  Identities=20%  Similarity=0.368  Sum_probs=79.2

Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf             10000012333444557677775321169962112100000000000023445642011233223434404665541233
Q gi|254780772|r  282 IYTVGNISIQSTLQEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVRVKTRINRDFAKRIVDIEYLIDQ  361 (781)
Q Consensus       282 ~y~i~~i~i~g~~~~~~~~~l~~~~~~k~G~~~~~~~~~~~~~~i~~~y~~~GY~fa~v~~~~~~d~~~~~vdi~~~I~e  361 (781)
                      ||+|++|+|.|+ ..++.++|.+.+++++|++|+...++++.++|.+.|.+.||.++.|.|.+..+.++++|+|+|.|+|
T Consensus         1 ry~v~~I~i~Gn-~~~~~~~l~~~l~~~~G~~~~~~~l~~~~~~l~~~y~~~Gy~~a~V~~~~~~~~~~~~v~i~~~V~e   79 (87)
T 2qdf_A            1 QYKLSGVEVSGN-LAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKTVKLRVNVDA   79 (87)
T ss_dssp             CCEEEEEEEEEE-CTTCHHHHHHHTCCCTTEECCHHHHHHHHHHHHHHHHTTTBSSCEEEEEEEEETTTTEEEEEEEEEC
T ss_pred             CEEEEEEEECCC-CCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEEEEEEEE
T ss_conf             136731131157-5321145676633689995199999999999999998679860389877788488998989999973


Q ss_pred             CCCCEEEC
Q ss_conf             32201100
Q gi|254780772|r  362 GSPLYVKR  369 (781)
Q Consensus       362 g~~~~i~~  369 (781)
                      |++++|++
T Consensus        80 g~~~~i~r   87 (87)
T 2qdf_A           80 GNRFYVRK   87 (87)
T ss_dssp             CCBCCCCC
T ss_pred             CCCEEECC
T ss_conf             89657559


No 13 
>>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane; 3.30A {Escherichia coli} (A:1-73)
Probab=99.36  E-value=2.4e-12  Score=97.66  Aligned_cols=72  Identities=22%  Similarity=0.466  Sum_probs=68.0

Q ss_pred             HCCCCEEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEEE
Q ss_conf             114652685899966500798899997487898826889999999999967980038999869989999993
Q gi|254780772|r   41 YGSNTSIVRRIEIRGATNVGKEVILSRIPVVVGQSISDADLDHAVKNIYAMGYFSNVKIKIVDSVLIIDLIE  112 (781)
Q Consensus        41 ~~~~~~~i~~I~i~G~~~i~~~~i~~~~~~~~G~~~~~~~i~~~i~~l~~~g~F~~v~~~~~~~~l~~~v~e  112 (781)
                      +..+.+.|.+|+|+||++++++.|+..+++++|++|+.+.+++++++||+||||++|++..+++.|+|.|+|
T Consensus         2 ~~g~~~~i~~I~i~G~~~~~~~~i~~~l~~k~G~~~s~~~i~~~~~~L~~~g~F~~V~v~~~~~~l~i~V~E   73 (73)
T 3efc_A            2 AMAEGFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDISNTIRALFATGNFEDVRVLRDGDTLLVQVKE   73 (73)
T ss_dssp             ----CCCEEEEECSCCSSSCHHHHHHTCSCCTTSCCCTHHHHHHHHHHHHHCCEEEEEEECCSSEEEEEEEE
T ss_pred             CCCCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCEEEEEEEE
T ss_conf             877771897999999835699999974699999927989999999999967995689999639999999995


No 14 
>>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A (A:158-248)
Probab=99.22  E-value=4.3e-11  Score=89.48  Aligned_cols=78  Identities=21%  Similarity=0.337  Sum_probs=69.4

Q ss_pred             EEEEEEEECCCCCCHHHHHHHHHHCC---------CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEE-EEEEC-CCCCEE
Q ss_conf             36579995654369889988730057---------86379999999999999999972970017998-76433-898425
Q gi|254780772|r  115 IINHLFFSGNNNLKDDQLKMIVRSRS---------AAAYDEDTVNADVHNIKQAYASIGYLNVMVKV-QHHSI-SPTTLN  183 (781)
Q Consensus       115 ~i~~i~~~Gn~~~~~~~l~~~~~~~~---------g~~~~~~~~~~~~~~i~~~y~~~Gy~~a~V~~-~~~~~-~~~~v~  183 (781)
                      .|.+|.|+||+.+++++|++.|..++         +.+|++..++.++++|+++|.++||++|+|.+ .+... +.+.+.
T Consensus         3 kI~~I~f~Gn~~~s~~~L~~~i~~k~~~~~~~~~~~~~~~~~~l~~D~~~l~~~Y~~~Gy~da~V~~~~v~~~~~~~~v~   82 (91)
T 2qdf_A            3 EIQQINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIY   82 (91)
T ss_dssp             EEEEEEEESCCSSCHHHHHGGGSCC--------------CCSCHHHHHHHHHHHHHTTTCTTCEEEEEEEEECTTSSEEE
T ss_pred             EEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHEECCCCCCE
T ss_conf             01355211454432023444444310011110124542015677777889999998435432465111111000244403


Q ss_pred             EEEEEECCC
Q ss_conf             889860366
Q gi|254780772|r  184 ITYVIEEGV  192 (781)
Q Consensus       184 i~~~I~EG~  192 (781)
                      |+|.|+||.
T Consensus        83 I~~~I~EGe   91 (91)
T 2qdf_A           83 VTVNITEGD   91 (91)
T ss_dssp             EEEEEECCC
T ss_pred             EEECCCCCC
T ss_conf             554113110


No 15 
>>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A (A:76-157)
Probab=99.20  E-value=2.1e-11  Score=91.54  Aligned_cols=81  Identities=21%  Similarity=0.259  Sum_probs=69.3

Q ss_pred             EEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEE
Q ss_conf             46778750443110122221110012211244566643102333345788888875423221001231012455554101
Q gi|254780772|r  195 KINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYHDRGYAAVKVSSQVLFDKQKSGYVLI  274 (781)
Q Consensus       195 ~I~~I~f~Gn~~f~~~~L~~~~~~k~~~~~~~~~~~~~~~~~l~~D~~~l~~~Y~~~GY~d~~V~~~~~~~~~~~~~~i~  274 (781)
                      .|.+|.|+||+.+++++|++.|++..     +..++.|+++.++.|+++|+++|+++||++++|+.++.. .+++.+.|+
T Consensus         2 ~I~~I~~~Gn~~~~~~~L~~~l~~~~-----l~~g~~~~~~~l~~~~~~I~~~Y~~~Gy~~a~V~~~~~~-~~~~~v~i~   75 (82)
T 2qdf_A            2 TIASITFSGNKSVKDDMLKQNLEASG-----VRVGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTP-LPRNRVDLK   75 (82)
T ss_dssp             EEEEEEEESCCSSCHHHHHHHHHTTT-----CCTTSBCCTTSHHHHHHHHHHHGGGGTBSSCEEEEEEEE-ETTTEEEEE
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHCC-----CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCHHHH
T ss_conf             11332100111110122222211102-----234565536666667899999886412311100112343-322101221


Q ss_pred             EEECCCC
Q ss_conf             2202222
Q gi|254780772|r  275 FQIDEGE  281 (781)
Q Consensus       275 ~~I~EG~  281 (781)
                      |.|+||.
T Consensus        76 ~~I~EG~   82 (82)
T 2qdf_A           76 LVFQEGV   82 (82)
T ss_dssp             EEEECCC
T ss_pred             HHHCCCC
T ss_conf             0101122


No 16 
>>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane; 3.30A {Escherichia coli} (A:156-247)
Probab=99.19  E-value=1.9e-11  Score=91.83  Aligned_cols=80  Identities=19%  Similarity=0.307  Sum_probs=70.7

Q ss_pred             CCEEEEEEEECCCCCCHHHHHHHHHHCC---------CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEE-EEE-CCCCC
Q ss_conf             6536579995654369889988730057---------863799999999999999999729700179987-643-38984
Q gi|254780772|r  113 RKIINHLFFSGNNNLKDDQLKMIVRSRS---------AAAYDEDTVNADVHNIKQAYASIGYLNVMVKVQ-HHS-ISPTT  181 (781)
Q Consensus       113 ~p~i~~i~~~Gn~~~~~~~l~~~~~~~~---------g~~~~~~~~~~~~~~i~~~y~~~Gy~~a~V~~~-~~~-~~~~~  181 (781)
                      +|.|.+|.|+||+.+++++|++.+..++         +.+|++.++++++++|+++|.++||++|.|+.. +.. .+.+.
T Consensus         2 r~~I~~I~f~Gn~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~D~~~i~~~Y~~~GY~~a~V~~~~~~~~~~~~~   81 (92)
T 3efc_A            2 SAEIQQINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKG   81 (92)
T ss_dssp             CCCCCCCEEESCCSSCTTTTGGGCCCCSSCCSCCSCTTTHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCCEECTTSCS
T ss_pred             CCEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCHHHHHHHHHHHCCEEEEEEECCEEEEECCCCC
T ss_conf             31058984226533320777766542000000001456643310010208899888723675899971224798056774


Q ss_pred             EEEEEEEECCC
Q ss_conf             25889860366
Q gi|254780772|r  182 LNITYVIEEGV  192 (781)
Q Consensus       182 v~i~~~I~EG~  192 (781)
                      ++|+|.|+||.
T Consensus        82 v~i~~~I~EGe   92 (92)
T 3efc_A           82 IYVTVNITEGD   92 (92)
T ss_dssp             EECEEEEECCC
T ss_pred             EEEEECCCCCC
T ss_conf             04620133341


No 17 
>>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane; 3.30A {Escherichia coli} (A:74-155)
Probab=99.17  E-value=4.1e-11  Score=89.58  Aligned_cols=82  Identities=21%  Similarity=0.276  Sum_probs=68.8

Q ss_pred             CEEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             32467787504431101222211100122112445666431023333457888888754232210012310124555541
Q gi|254780772|r  193 KAKINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYHDRGYAAVKVSSQVLFDKQKSGYV  272 (781)
Q Consensus       193 ~~~I~~I~f~Gn~~f~~~~L~~~~~~k~~~~~~~~~~~~~~~~~l~~D~~~l~~~Y~~~GY~d~~V~~~~~~~~~~~~~~  272 (781)
                      |++|.+|.|+||+.+++++|++.|+...     +..++.|+++.++.|+++|+++|+++||++|+|..++.. .+.+.+.
T Consensus         1 k~~i~~i~~~Gn~~~~~~~l~~~l~~~~-----l~~g~~~~~~~l~~~~~~I~~~Y~~~Gy~~a~V~~~~~~-~~~~~v~   74 (82)
T 3efc_A            1 RPTIASITFSGNKSVKDDMLKQNLEASG-----VRVGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTP-LPRNRVD   74 (82)
T ss_dssp             CCEEEEEEEESCTTSCHHHHHHHHHHHT-----CCSSSCCCGGGHHHHHHHHHHHHHTTTCCSCEEEEECCB-CTTSEEE
T ss_pred             CCEEEEEEEECCCCCCHHHHHHHHHHCC-----CCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEE-CCCCEEE
T ss_conf             4522279998452034445433322014-----444441246678999999999998728536899988752-5775167


Q ss_pred             EEEEECCC
Q ss_conf             01220222
Q gi|254780772|r  273 LIFQIDEG  280 (781)
Q Consensus       273 i~~~I~EG  280 (781)
                      |+|.|+||
T Consensus        75 i~~~I~EG   82 (82)
T 3efc_A           75 LKLVFQEG   82 (82)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEEC
T ss_conf             89887405


No 18 
>>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane; 3.30A {Escherichia coli} (A:1-73)
Probab=99.14  E-value=1e-11  Score=93.50  Aligned_cols=72  Identities=26%  Similarity=0.306  Sum_probs=65.1

Q ss_pred             CCCCCCEEECCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             3332201100333343200332100100100000001234445666776510123445332544356543102332211
Q gi|254780772|r  360 DQGSPLYVKRIEIEGNDQSYDSVIRRELELSEGDPINYSMIERAKRRIMATGYFSEVNISQLPANDVSDYVILRVSVKQ  438 (781)
Q Consensus       360 ~eg~~~~i~~I~I~GN~~T~d~VIrrel~~~~Gd~~~~~~i~~s~~~L~~lg~F~~V~i~~~~~~~~~~~vdl~i~v~E  438 (781)
                      .+|++++|++|.|.||.++++.+|++.+.++||++|+..++++++++|+++|+|++|.+.+.       ..+|.++|+|
T Consensus         2 ~~g~~~~i~~I~i~G~~~~~~~~i~~~l~~k~G~~~s~~~i~~~~~~L~~~g~F~~V~v~~~-------~~~l~i~V~E   73 (73)
T 3efc_A            2 AMAEGFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDISNTIRALFATGNFEDVRVLRD-------GDTLLVQVKE   73 (73)
T ss_dssp             ----CCCEEEEECSCCSSSCHHHHHHTCSCCTTSCCCTHHHHHHHHHHHHHCCEEEEEEECC-------SSEEEEEEEE
T ss_pred             CCCCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEC-------CCEEEEEEEE
T ss_conf             87777189799999983569999997469999992798999999999996799568999963-------9999999995


No 19 
>>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A (A:1-75)
Probab=99.12  E-value=1.2e-11  Score=93.05  Aligned_cols=73  Identities=26%  Similarity=0.295  Sum_probs=67.2

Q ss_pred             CCCCCCEEECCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             33322011003333432003321001001000000012344456667765101234453325443565431023322112
Q gi|254780772|r  360 DQGSPLYVKRIEIEGNDQSYDSVIRRELELSEGDPINYSMIERAKRRIMATGYFSEVNISQLPANDVSDYVILRVSVKQL  439 (781)
Q Consensus       360 ~eg~~~~i~~I~I~GN~~T~d~VIrrel~~~~Gd~~~~~~i~~s~~~L~~lg~F~~V~i~~~~~~~~~~~vdl~i~v~E~  439 (781)
                      .+|++++|++|.|.||.++.+.+|++.+++++|++|+..++++++++|+++|+|++|.+++.       ..+|.++|+||
T Consensus         3 ~~~~~~~i~~I~v~Gn~~~~~~~i~~~l~~k~G~~~s~~~l~~~~~~L~~tg~F~~V~i~~~-------~~~L~i~v~Er   75 (75)
T 2qdf_A            3 HMAEGFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDISNTIRALFATGNFEDVRVLRD-------GDTLLVQVKER   75 (75)
T ss_dssp             -CCCCEECCEEEEESCSSSCHHHHHHTSSCCTTCEECHHHHHHHHHHHHTTSCEEEEEEEEE-------TTEEEEEEEEC
T ss_pred             CCCCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEC-------CCEEEEEEEEE
T ss_conf             65676379799999982469999998468999990799999999999997599026999962-------88799999974


No 20 
>>2vh2_A FTSQ, cell division protein FTSQ; potra, cell cycle; 3.4A {Yersinia enterocolitica} (A:1-97)
Probab=97.79  E-value=7.6e-05  Score=48.58  Aligned_cols=79  Identities=11%  Similarity=0.163  Sum_probs=65.9

Q ss_pred             HHHHHHHCCCCEEEEEEEEECCC-CCCHHHHHHH-CCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEE-CCEEEEEEE
Q ss_conf             99987511465268589996650-0798899997-48789882688999999999996798003899986-998999999
Q gi|254780772|r   35 FGLSAVYGSNTSIVRRIEIRGAT-NVGKEVILSR-IPVVVGQSISDADLDHAVKNIYAMGYFSNVKIKIV-DSVLIIDLI  111 (781)
Q Consensus        35 ~~~~~~~~~~~~~i~~I~i~G~~-~i~~~~i~~~-~~~~~G~~~~~~~i~~~i~~l~~~g~F~~v~~~~~-~~~l~~~v~  111 (781)
                      .+.......+...|++|+|+|+. ..+++.|+.. .++..|+++-.-+.++..++|-+..+.+++++... .+.+.+.|+
T Consensus        15 ~~~~~~~~~~~~~i~~I~V~G~~~~~~~~~i~~~~~~~~~g~~~~~id~~~~~~~l~~~p~V~~a~V~r~~P~~l~I~v~   94 (97)
T 2vh2_A           15 VPRGSHMASSRLPLSKLVVTGERHYTTNDDIRQAILSLGAPGTFMTQDVNIIQQQIERLPWIQQASVRKQWPDELKIHLV   94 (97)
T ss_dssp             ------------CCCEEEEESCCSSCCHHHHHHHHTTSCCSSTTTSCHHHHHHHHTSCCSSEEEEEEEEETTTEEEEEEE
T ss_pred             EEECCHHCCCCCCEEEEEEECCCEECCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHCCCCEEEEEEEEECCCCEEEEEE
T ss_conf             77000110367851599997986027999999998731578853997799999999719983699999957996699996


Q ss_pred             EC
Q ss_conf             36
Q gi|254780772|r  112 ER  113 (781)
Q Consensus       112 e~  113 (781)
                      |+
T Consensus        95 Er   96 (97)
T 2vh2_A           95 EY   96 (97)
T ss_dssp             EC
T ss_pred             EC
T ss_conf             04


No 21 
>>2vh1_A FTSQ, cell division protein FTSQ; potra, membrane, septation, cell cycle, transmembrane, inner membrane; 2.7A {Escherichia coli} (A:1-71)
Probab=96.89  E-value=0.0062  Score=36.04  Aligned_cols=66  Identities=14%  Similarity=0.224  Sum_probs=57.1

Q ss_pred             EEEEEEECC-CCCCHHHHHHH-CCCCCCCCCCHHHHHHHHHHHHH-CCCCCEEEEEEE-CCEEEEEEEEC
Q ss_conf             858999665-00798899997-48789882688999999999996-798003899986-99899999936
Q gi|254780772|r   48 VRRIEIRGA-TNVGKEVILSR-IPVVVGQSISDADLDHAVKNIYA-MGYFSNVKIKIV-DSVLIIDLIER  113 (781)
Q Consensus        48 i~~I~i~G~-~~i~~~~i~~~-~~~~~G~~~~~~~i~~~i~~l~~-~g~F~~v~~~~~-~~~l~~~v~e~  113 (781)
                      |++|.|.|+ ++++.+.|+.. .++..|+.+-.-++++.-.+|-+ ..+.++|+|... .+.|.+.|+|+
T Consensus         1 I~~i~V~G~~~~v~~~~I~~~i~~~~~~~~~~~~d~~~i~~~l~~~lpwV~~v~V~r~~P~~l~I~v~Er   70 (71)
T 2vh1_A            1 MSKLVLTGERHYTRNDDIRQSILALGEPGTFMTQDVNIIQTQIEQRLPWIKQVSVRKQWPDELKIHLVEY   70 (71)
T ss_dssp             -CEEEEESCCSSCCHHHHHHHHHTTSCTTCGGGSCHHHHHHHHHHHCTTEEEEEEEEETTTEEEEEEEEC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHCCCHHHEEEEEEECCCCEEEEEEEE
T ss_conf             9579996987108899999998732478860451799999999853985239999952899569999952


No 22 
>>2vh2_A FTSQ, cell division protein FTSQ; potra, cell cycle; 3.4A {Yersinia enterocolitica} (A:1-97)
Probab=87.07  E-value=0.14  Score=27.12  Aligned_cols=56  Identities=13%  Similarity=0.252  Sum_probs=35.1

Q ss_pred             CEEECCCCCCCC-CCCCCCCHHH-CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             011003333432-0033210010-0100000001234445666776510123445332
Q gi|254780772|r  365 LYVKRIEIEGND-QSYDSVIRRE-LELSEGDPINYSMIERAKRRIMATGYFSEVNISQ  420 (781)
Q Consensus       365 ~~i~~I~I~GN~-~T~d~VIrre-l~~~~Gd~~~~~~i~~s~~~L~~lg~F~~V~i~~  420 (781)
                      +.+.+|.|.||. .+.+..|+.. ..+.+|+.+=.-+.++-.++|.++...++|.+.-
T Consensus        26 ~~i~~I~V~G~~~~~~~~~i~~~~~~~~~g~~~~~id~~~~~~~l~~~p~V~~a~V~r   83 (97)
T 2vh2_A           26 LPLSKLVVTGERHYTTNDDIRQAILSLGAPGTFMTQDVNIIQQQIERLPWIQQASVRK   83 (97)
T ss_dssp             -CCCEEEEESCCSSCCHHHHHHHHTTSCCSSTTTSCHHHHHHHHTSCCSSEEEEEEEE
T ss_pred             CCEEEEEEECCCEECCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHCCCCEEEEEEEE
T ss_conf             8515999979860279999999987315788539977999999997199836999999


No 23 
>>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A* (A:245-337)
Probab=63.53  E-value=3.8  Score=17.81  Aligned_cols=12  Identities=25%  Similarity=0.620  Sum_probs=4.1

Q ss_pred             CCCEECCCCCCH
Q ss_conf             996211210000
Q gi|254780772|r  310 SGNLYNPQEIKE  321 (781)
Q Consensus       310 ~G~~~~~~~~~~  321 (781)
                      .|.+|+.+.+.+
T Consensus        54 ~G~~y~~~~i~~   65 (93)
T 3a7r_A           54 QGCLYRADMLQQ   65 (93)
T ss_dssp             TTCBSSHHHHHH
T ss_pred             CCCCCCHHHHHH
T ss_conf             799878999999


No 24 
>>2fna_A Conserved hypothetical protein; 13814777, structural genomics, joint center for structural genomics, JCSG; HET: MSE ADP; 2.00A {Sulfolobus solfataricus P2} (A:286-357)
Probab=61.20  E-value=5.3  Score=16.86  Aligned_cols=35  Identities=11%  Similarity=0.218  Sum_probs=26.8

Q ss_pred             HHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf             89999748789882688999999999996798003
Q gi|254780772|r   62 EVILSRIPVVVGQSISDADLDHAVKNIYAMGYFSN   96 (781)
Q Consensus        62 ~~i~~~~~~~~G~~~~~~~i~~~i~~l~~~g~F~~   96 (781)
                      +.|+..+..+.|.++++..++..+++|-++||...
T Consensus        21 s~IK~yle~~~G~~I~d~~ls~lL~nL~k~~~iek   55 (72)
T 2fna_A           21 SDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIK   55 (72)
T ss_dssp             HHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEE
T ss_pred             CHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf             13999999974279998999999999997797899


No 25 
>>1vqz_A Lipoate-protein ligase, putative; NP_345629.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.99A {Streptococcus pneumoniae TIGR4} (A:252-341)
Probab=53.62  E-value=4  Score=17.69  Aligned_cols=12  Identities=8%  Similarity=0.063  Sum_probs=4.7

Q ss_pred             CEEEEEEECCCC
Q ss_conf             046655412333
Q gi|254780772|r  351 RIVDIEYLIDQG  362 (781)
Q Consensus       351 ~~vdi~~~I~eg  362 (781)
                      ++|++.++|..|
T Consensus        18 G~ve~~l~v~~G   29 (90)
T 1vqz_A           18 GKVEVFANVTES   29 (90)
T ss_dssp             EEEEEEEEEETT
T ss_pred             CEEEEEEEEECC
T ss_conf             379999998169


No 26 
>>2k4v_A Uncharacterized protein PA1076; structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} (A:)
Probab=33.33  E-value=11  Score=14.84  Aligned_cols=20  Identities=35%  Similarity=0.642  Sum_probs=16.0

Q ss_pred             CHHHCCCCCCCHHHHHHHHH
Q ss_conf             00100100000001234445
Q gi|254780772|r  383 IRRELELSEGDPINYSMIER  402 (781)
Q Consensus       383 Irrel~~~~Gd~~~~~~i~~  402 (781)
                      ||+.|.++|||+.+...+++
T Consensus       102 IR~KL~~kpGepV~~ehler  121 (125)
T 2k4v_A          102 IRAKLHAHPGEPVDLERIIR  121 (125)
T ss_dssp             HHHHHHSSCCCCCTHHHHHC
T ss_pred             HHHHCCCCCCCCCCHHHHHH
T ss_conf             99980889999888767530


No 27 
>>1p4t_A Outer membrane protein NSPA; beta barrel; HET: CXE; 2.55A {Neisseria meningitidis} (A:)
Probab=32.11  E-value=21  Score=12.90  Aligned_cols=26  Identities=8%  Similarity=0.045  Sum_probs=14.2

Q ss_pred             CCEEEEEEEEEEEE-CCCCCEEEEEEE
Q ss_conf             64247999999975-570015899887
Q gi|254780772|r  735 SFWRVSTGVEIMWN-SPLGMMGVYYGI  760 (781)
Q Consensus       735 ~~~r~s~G~Glr~~-tP~Gpirld~a~  760 (781)
                      ..+...+|+|+.+. +|---++++|-+
T Consensus       104 ~~~~~~~g~G~~y~i~~~~~~~~~y~y  130 (155)
T 1p4t_A          104 TSIGLGVLTGVSYAVTPNVDLDAGYRY  130 (155)
T ss_dssp             CEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred             CEEEEEEEEEEEEEECCCEEEEEEEEE
T ss_conf             327314731799994589999999999


No 28 
>>1ioo_A SF11-RNAse; SELF-incompatibility ribonuclease, hydrolase; HET: NAG BMA MAN; 1.55A {Nicotiana alata} (A:)
Probab=24.75  E-value=29  Score=12.07  Aligned_cols=28  Identities=25%  Similarity=0.262  Sum_probs=14.3

Q ss_pred             CHHHHHHHHHCCCCCEECCCCCCHHHHH
Q ss_conf             7677775321169962112100000000
Q gi|254780772|r  298 QKKTLLSLIRIRSGNLYNPQEIKESSEK  325 (781)
Q Consensus       298 ~~~~l~~~~~~k~G~~~~~~~~~~~~~~  325 (781)
                      +...+.+...+.+|..|+...+++++++
T Consensus       116 n~~~~l~~~~i~pg~~~~~~~i~~ai~~  143 (196)
T 1ioo_A          116 DLLRTLQTHRIIPGSSYTFQDIFDAIKT  143 (196)
T ss_dssp             CHHHHHHHTTCCTTEEECHHHHHHHHHH
T ss_pred             CHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf             8999999758689984479999999999


No 29 
>>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structure funded by NIH; 1.95A {Chlorobium tepidum tls} (A:1-85)
Probab=24.51  E-value=29  Score=12.04  Aligned_cols=42  Identities=21%  Similarity=0.437  Sum_probs=23.6

Q ss_pred             EEEECCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             9995654369889988730057863799999999999999999729
Q gi|254780772|r  119 LFFSGNNNLKDDQLKMIVRSRSAAAYDEDTVNADVHNIKQAYASIG  164 (781)
Q Consensus       119 i~~~Gn~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~i~~~y~~~G  164 (781)
                      +.|...+-++-++|.+.+    +..+++..+.+..+.+++.|.+.+
T Consensus        15 lLf~~gepls~~~L~~~l----~~~i~~~~i~~~l~~L~~~y~~~~   56 (85)
T 1t6s_A           15 LIFSSEEPVNLQTLSQIT----AHKFTPSELQEAVDELNRDYEATG   56 (85)
T ss_dssp             HHHHCSSCBCHHHHHHHT----TCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHCCCCCCHHHHHHHH----CCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             997638988999999986----658999999999999999865156


No 30 
>>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein- protein interaction; 2.44A {Homo sapiens} (A:)
Probab=21.89  E-value=32  Score=11.71  Aligned_cols=25  Identities=8%  Similarity=0.102  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHCCCCCEEEEEEECC
Q ss_conf             9999999999679800389998699
Q gi|254780772|r   80 DLDHAVKNIYAMGYFSNVKIKIVDS  104 (781)
Q Consensus        80 ~i~~~i~~l~~~g~F~~v~~~~~~~  104 (781)
                      .+.++++.|+..|.|.||.+..+|.
T Consensus        15 ~l~~~l~~l~~~~~~~Dv~l~v~~~   39 (124)
T 2ihc_A           15 NVLLSLNDQRKKDVLCDVTIFVEGQ   39 (124)
T ss_dssp             HHHHHHHHHHHHTCSCCEEEEETTE
T ss_pred             HHHHHHHHHHHCCCCEEEEEEECCE
T ss_conf             9999999998369968899999998


No 31 
>>2sak_A Staphylokinase; plasminogen activation, fibrinolysis, hydrolase, plasminogen activator; 1.80A {Staphylococcus aureus} (A:)
Probab=21.32  E-value=31  Score=11.85  Aligned_cols=45  Identities=22%  Similarity=0.291  Sum_probs=25.5

Q ss_pred             CCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHH-HHHHH--HCCCCCCCC
Q ss_conf             343200332100100100000001234445666-77651--012344533
Q gi|254780772|r  373 EGNDQSYDSVIRRELELSEGDPINYSMIERAKR-RIMAT--GYFSEVNIS  419 (781)
Q Consensus       373 ~GN~~T~d~VIrrel~~~~Gd~~~~~~i~~s~~-~L~~l--g~F~~V~i~  419 (781)
                      .||....++.+  ++++++|+.++...|.+-.+ .|...  +-|+-|.+.
T Consensus        20 ~g~~il~P~Y~--ei~l~~G~t~~keeil~~Vq~~idas~~~~fkvV~~~   67 (121)
T 2sak_A           20 KGNELLSPHYV--EFPIKPGTTLTKEKIEYYVEWALDATAYKEFRVVELD   67 (121)
T ss_dssp             TCCEEEEEEEE--EEECCTTCEECHHHHHHHHHHHHTTSTTTTCEEEEEC
T ss_pred             CCCEEECCCCE--EEECCCCCEECHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf             99889555207--8864768463699999999987433104635788517


No 32 
>>1kmo_A FECA, iron(III) dicitrate transport protein FECA; membrane protein, iron transporter, TONB-dependent receptor, siderophore; HET: LDA HTO; 2.00A {Escherichia coli K12} (A:)
Probab=21.22  E-value=23  Score=12.67  Aligned_cols=22  Identities=9%  Similarity=0.292  Sum_probs=8.9

Q ss_pred             EEEEEEEEEECCCCCEEEEEEE
Q ss_conf             7999999975570015899887
Q gi|254780772|r  739 VSTGVEIMWNSPLGMMGVYYGI  760 (781)
Q Consensus       739 ~s~G~Glr~~tP~Gpirld~a~  760 (781)
                      ..+.+|.++..+-..+.+.+..
T Consensus       717 ~d~~~~y~~~~~~~~~~~~~~v  738 (774)
T 1kmo_A          717 WGARVAYDFGPQMADLNLAFGV  738 (774)
T ss_dssp             EEEEEEEECCTTTTCCEEEEEE
T ss_pred             EEEEEEEEECCCCCCEEEEEEE
T ss_conf             9999999936888888999999


No 33 
>>1c76_A Staphylokinase, SAK; beta-grAsp family; 2.25A {Staphylococcus aureus} (A:)
Probab=21.06  E-value=33  Score=11.70  Aligned_cols=44  Identities=23%  Similarity=0.294  Sum_probs=25.7

Q ss_pred             CCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHH-HHHHH--HCCCCCCC
Q ss_conf             343200332100100100000001234445666-77651--01234453
Q gi|254780772|r  373 EGNDQSYDSVIRRELELSEGDPINYSMIERAKR-RIMAT--GYFSEVNI  418 (781)
Q Consensus       373 ~GN~~T~d~VIrrel~~~~Gd~~~~~~i~~s~~-~L~~l--g~F~~V~i  418 (781)
                      .||....++.+  ++++.+|+.++...|.+-.+ .|...  +-|+-|.+
T Consensus        35 ~g~~ilsP~Y~--ei~L~~G~tltkeeil~~Vq~~idas~~~~fkvV~~   81 (136)
T 1c76_A           35 KGNELLSPHYV--EFPIKPGTTLTKEKIEYYVEWALDATAYKEFRVVEL   81 (136)
T ss_dssp             TCCEEECCCCE--EEECCTTCEECHHHHHHHHHHHHTTSTTTTEEEEEE
T ss_pred             CCCEEECCCCE--EEECCCCCEECHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf             99889545207--886476846269999999998643310463478851


No 34 
>>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanococcus jannaschii} (A:1-209,A:275-326)
Probab=20.66  E-value=34  Score=11.55  Aligned_cols=13  Identities=15%  Similarity=0.542  Sum_probs=4.9

Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             0123444566677
Q gi|254780772|r  395 INYSMIERAKRRI  407 (781)
Q Consensus       395 ~~~~~i~~s~~~L  407 (781)
                      ||.+.++.+.++|
T Consensus       231 f~~~r~~~~~~~~  243 (261)
T 1a76_A          231 FNYDRVKKHVDKL  243 (261)
T ss_dssp             CCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
T ss_conf             9999999999999


No 35 
>>1qjp_A Outer membrane protein A; HET: C8E; 1.65A {Escherichia coli} (A:)
Probab=20.17  E-value=35  Score=11.48  Aligned_cols=26  Identities=8%  Similarity=-0.072  Sum_probs=13.8

Q ss_pred             EEEEEEEEEEEE-CCCCCEEEEEEEEC
Q ss_conf             247999999975-57001589988722
Q gi|254780772|r  737 WRVSTGVEIMWN-SPLGMMGVYYGIPL  762 (781)
Q Consensus       737 ~r~s~G~Glr~~-tP~Gpirld~a~pl  762 (781)
                      +...+|+|+.|. +|---++++|-+-.
T Consensus       119 ~~~~~g~G~~y~l~~~~~i~~e~~~~~  145 (171)
T 1qjp_A          119 VSPVFAGGVEYAITPEIATRLEYQWTN  145 (171)
T ss_dssp             EEEEEEEEEEEEEETTEEEEEEEEEEC
T ss_pred             EEEEEEEEEEEEECCCEEEEEEEEEEE
T ss_conf             325888279999359979999999997


No 36 
>>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus} (A:556-627,A:754-826)
Probab=20.05  E-value=35  Score=11.47  Aligned_cols=10  Identities=30%  Similarity=0.561  Sum_probs=3.2

Q ss_pred             EEEEEECCCC
Q ss_conf             6655412333
Q gi|254780772|r  353 VDIEYLIDQG  362 (781)
Q Consensus       353 vdi~~~I~eg  362 (781)
                      ++|.+.=.++
T Consensus        24 v~l~v~~~~~   33 (145)
T 2b39_A           24 ITLKIEADQG   33 (145)
T ss_dssp             EEEEEEECTT
T ss_pred             EEEEEEECCC
T ss_conf             9999995589


No 37 
>>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} (A:)
Probab=20.04  E-value=35  Score=11.47  Aligned_cols=20  Identities=5%  Similarity=0.242  Sum_probs=6.9

Q ss_pred             HHHHHHHHHCCCCCEEEEEE
Q ss_conf             99999999679800389998
Q gi|254780772|r   82 DHAVKNIYAMGYFSNVKIKI  101 (781)
Q Consensus        82 ~~~i~~l~~~g~F~~v~~~~  101 (781)
                      .+.+++|++.|.|+||.+..
T Consensus        13 ~~~l~~l~~~~~~~Dv~i~v   32 (135)
T 2yy9_A           13 LQELNKQREKGQYCDATLDV   32 (135)
T ss_dssp             HHHHHHHHHTTTTCCEEEEE
T ss_pred             HHHHHHHHHCCCCEEEEEEE
T ss_conf             99999999429951289999


Done!