HHsearch results for GI: 254780772 and protein with PDBid: 2qdz_A
>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis}
Probab=100.00 E-value=0 Score=412.68 Aligned_cols=476 Identities=13% Similarity=0.124 Sum_probs=334.1
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 55554101220222210000012333444557677775321169962112100000000000023445642011233223
Q gi|254780772|r 267 QKSGYVLIFQIDEGEIYTVGNISIQSTLQEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVRVKTRINR 346 (781)
Q Consensus 267 ~~~~~~i~~~I~EG~~y~i~~i~i~g~~~~~~~~~l~~~~~~k~G~~~~~~~~~~~~~~i~~~y~~~GY~fa~v~~~~~~ 346 (781)
+.....+...+.||+++.|+.|.|+|+. ..+.++|.+++....|++++...+++.+++|++.|.++||++++|.. +.+
T Consensus 43 ~~~~~~~~~~~~~g~~~~v~~i~~~g~~-~~~~~~l~~~~~~~~G~~~~~~~l~~~~~~i~~~y~~~GY~~a~v~~-~~q 120 (554)
T 2qdz_A 43 EAAAPARKPDATSGHTVTVHAVDLDFGV-EGRLFDPAPLVQDYLNRPLDNEQLFLLVKALSAALYDRGYATSIVTF-VPP 120 (554)
T ss_dssp ----------CBCCCSSSSCCEEEECCS-SSCCCSCSTTSTTSSSSCBCSTTHHHHHHHHHHHHHHTTCTTCEEEE-EEE
T ss_pred CCCCCCCCCCCCCCCEEEEEEEEEECCC-CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEE-CCC
T ss_conf 6677754466888863899999984886-58989999877862598469999999999999999978984689871-243
Q ss_pred CCCCCEEEEEEECCCCCCCEEECCCCCCCCCCCCC---CCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 43440466554123332201100333343200332---100100100000001234445666776510123445332544
Q gi|254780772|r 347 DFAKRIVDIEYLIDQGSPLYVKRIEIEGNDQSYDS---VIRRELELSEGDPINYSMIERAKRRIMATGYFSEVNISQLPA 423 (781)
Q Consensus 347 d~~~~~vdi~~~I~eg~~~~i~~I~I~GN~~T~d~---VIrrel~~~~Gd~~~~~~i~~s~~~L~~lg~F~~V~i~~~~~ 423 (781)
+.++++ |++.|.|| +|++|.|.||..+.+. .+++.+++++|++|+..++++++++|.++++|..|.+.+.
T Consensus 121 ~~~~g~--l~i~v~eG---~i~~i~i~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~le~~~~~l~~~g~~~~v~l~p~-- 193 (554)
T 2qdz_A 121 GVVDGV--LKLKVEWG---RIKGWLIDGKPLEGTRDRMMVFSAMPGWQDKVLNVFDIDQAIYNINNGGKTGNITIVPA-- 193 (554)
T ss_dssp EEETTE--EEEEEECC---EEEEEEETTEECCSHHHHHHHHHHSTTCTTCBCCHHHHHHHHHHHCSSSEEEEEEEEEC--
T ss_pred CCCCCE--EEEEEEEC---EEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEC--
T ss_conf 476867--99999985---15568983255567136666776476777884678899999998750586225898607--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEC------CCCEEEEEE
Q ss_conf 3565431023322112211111111-----12233211000001112333234422003787411------221111345
Q gi|254780772|r 424 NDVSDYVILRVSVKQLSAGSVGIAT-----NYEVDKGMGVEGHIDDNNFFGQGYRARLAAGFGRH------AVQNYTFSV 492 (781)
Q Consensus 424 ~~~~~~vdl~i~v~E~~tg~~~~g~-----gys~~~g~~~~~~~~~~Nl~G~G~~l~l~~~~~~~------~~~~~~~s~ 492 (781)
..++.+++.+.|+|+++..+++++ |+.+..+..+.+++.++|++|.|+++++++..+.. ..+.++++|
T Consensus 194 -~~~g~~~~~v~v~~~~~~~~~~~~~~~~~G~~~~g~~~~~~~~~~~Nl~G~gd~l~~~~~~s~~~~~~~~~~~~~~~~y 272 (554)
T 2qdz_A 194 -DEYGYSYLDLQLQRRALPRVSLGMDNSGPGTPENGRYKYNASVTANDLLGLNDTLGLYIGNRYYRDAGHDAERNYDLMY 272 (554)
T ss_dssp -SSTTEEEEEEEEEECCSCEEEEEEEECSCSSSCSSCEEEEEEEEEECSSSSSCEEEEEEEEECCSCCSSCEEEEEEEEE
T ss_pred -CCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEE
T ss_conf -8898522678988735553210212457875544358999999965777879779999874233355655413467764
Q ss_pred EECCCCCCCCCCCCCC--CCCCC----CCCCCCCCCCCCEEEEEEECCCCEE--EEECCCEEEEEEECCCCCCCCCHHHH
Q ss_conf 4112357775431001--11133----3333432333202455420254302--35404125776401467544201112
Q gi|254780772|r 493 EDPYFLGSPISAGFDL--QKTHL----EDGSLDINDESAAVRMIVPITESIS--TSFKYDLRFLQYGAISEKEKIPSIYT 564 (781)
Q Consensus 493 ~~P~~~~~~~s~~~~~--~~~~~----~~~~y~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (781)
..|+... .+++..+. +.... ....+...+...++++.+++.+... ..+.+.+.+.+..........
T Consensus 273 ~~P~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~----- 346 (554)
T 2qdz_A 273 SVPLGRT-RLDLQTGYSTYRNLLKTRYGQYQSAGNSRSFGLKATRLLYRDTRSQFSVYGGLKLRQNKNYLAGTRL----- 346 (554)
T ss_dssp EEEETTE-EEEEEEEEEEEECCCSSSSCCCCCEEEEEEEEEEEEEEEECCSSEEEEEEEEEEEEEEEEECCTTSC-----
T ss_pred ECCCCCC-CCEEEEEEEEEEEECCCCCCCEEECCCCEEECCEEEEEEEEECCCEEEEEEEEEEEECCEEECCCCC-----
T ss_conf 0234544-4135542223322115664201203421020542565467501113667889998642213056113-----
Q ss_pred HHHCCCCCEEEEEEEEECCCC------CCCCCCCCCCEEEEEEECC--CCCCCCCEEEEEEEEEEEEEEECC-CEEEEEE
Q ss_conf 210158502467884321554------2011002465156542024--565554203666630047999358-8099999
Q gi|254780772|r 565 TLIEHGKFSSHSISQSIIYNT------LDNPIVPRKGMLISSSYDY--AGFGGDSQYHRIGSRASYFYLLSD-DSDIVGS 635 (781)
Q Consensus 565 ~~~~~~~~~~~~i~~~l~~dt------rD~~~~Pt~G~~~~~~~~~--a~~g~d~~f~k~~~~~~~y~~l~~-~~~l~~~ 635 (781)
.........+..+++++. .+..+.++.|......... ...+++.+|.|+.+++.++.++.. ...+.+.
T Consensus 347 ---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 423 (554)
T 2qdz_A 347 ---DVSSKHYSDVTVGMQYSTQRGANAYFGDLSFTRGVGVNNGKYAAYDERGPQGNVSRFNGSLAWTRYMALAGQPIQWA 423 (554)
T ss_dssp ---CCEEEEEEEEEEEEEEEEECSSEEEEEEEEEEECCCC--------------CCCEEEEEEEEEEEEEEETTEEEEEE
T ss_pred ---CCCCCCCEEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCEEE
T ss_conf ---44431110588863168884785250343312355544554322235688774599999988999862057541231
Q ss_pred EEEEEEEEECCCCCCCCHHEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCC--CCCCCEEEEEEE
Q ss_conf 999789851699741230127507897140212686155037997222147899999999614565--654537999999
Q gi|254780772|r 636 LRFGYGCVIPSNKNLQLFDQFSVSSNYYLRGFAYKGIGPRVDKKYAIGGKIYSSASAAVSFPMPLV--PERAGLRGAFFV 713 (781)
Q Consensus 636 ~~~g~~~~~~~~~~lp~~erF~lGG~~svRGy~~~~iGP~~~~~~~~GG~~~~~~s~E~r~pl~~~--~~~~~l~~~~F~ 713 (781)
..++ ..+ +++.+|++|+|++||.++||||+.+++ ++|+..+.+++|+++|++.. .....+.+.+|+
T Consensus 424 ~~~~--~q~-s~~~lp~~e~f~lGG~~sVRGy~~~~~---------l~Gd~g~~~~~El~~~~~~~~~~~~~~l~~~~F~ 491 (554)
T 2qdz_A 424 SQLG--FQY-SRQQLLNSYQITVGDEYTVRGYNLRTS---------QSGDSGVYLSNTLTVPVQFSLLGKQASVAPFVGA 491 (554)
T ss_dssp EEEE--EEE-CSSCSSSSEECCSCCCCCCTTCCCCCS---------CCSSCSSCCEESEEEEEEEEEEECCSSCEEEEEE
T ss_pred EEEE--EEE-CCCCCCCCCEEEECCCCCCCCCCCCCC---------CCCCCEEEEEEEEEEECCCCCCCCCCEEEEEEEE
T ss_conf 0132--220-688777554696089982726378985---------3523369999999998655445666248999999
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCCC---EEEEEEEEEEECC
Q ss_conf 7677415666677544456766424799999997557001589988722677876---0258999641059
Q gi|254780772|r 714 DSATLYANHVALGADKLEGNDSFWRVSTGVEIMWNSPLGMMGVYYGIPLRHREGD---KIQQFGFRIGNRM 781 (781)
Q Consensus 714 D~G~v~~~~~~~~~~~~~~~~~~~r~s~G~Glr~~tP~Gpirld~a~pl~~~~~D---~~~~f~FsiG~~f 781 (781)
|+|+||++..+... ...+|+|+|+||.+|+||++||||+||++.+++ ...+|||++|..|
T Consensus 492 D~G~v~~~~~~~~~--------~~l~g~G~Glr~~~p~g~l~~d~a~pl~~~~~~~~~~~~~~yfsig~~F 554 (554)
T 2qdz_A 492 DVGALKSNHPDART--------IRMAGLAAGVRFDLPYARMSFTYSKPVGAQPGGAPRAPVWLYINAGLSF 554 (554)
T ss_dssp EEEEEECSSSSCCE--------EEEEEEEEEEEECCSSEEEEEEEEEECSCSCSSSCCCCSEEEEEEEEEC
T ss_pred EEEEECCCCCCCCC--------CEEEEEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEC
T ss_conf 98995257888888--------7799999999998288799999999876898887578679999998389