HHsearch results for GI: 254780772 and protein with PDBid: 2qdz_A
>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis}
Probab=99.50 E-value=1.1e-13 Score=105.49 Aligned_cols=167 Identities=12% Similarity=0.053 Sum_probs=127.7
Q ss_pred CCEEEEEEEECCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 84258898603663246778750443110122221110012211244566643102333345788888875423221001
Q gi|254780772|r 180 TTLNITYVIEEGVKAKINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYHDRGYAAVKVS 259 (781)
Q Consensus 180 ~~v~i~~~I~EG~~~~I~~I~f~Gn~~f~~~~L~~~~~~k~~~~~~~~~~~~~~~~~l~~D~~~l~~~Y~~~GY~d~~V~ 259 (781)
....+...+++|+++.|+.|.|+|++.+++.+|..++.... +..++...+...+++|.++|+++||+.++|.
T Consensus 45 ~~~~~~~~~~~g~~~~v~~i~~~g~~~~~~~~l~~~~~~~~--------G~~~~~~~l~~~~~~i~~~y~~~GY~~a~v~ 116 (554)
T 2qdz_A 45 AAPARKPDATSGHTVTVHAVDLDFGVEGRLFDPAPLVQDYL--------NRPLDNEQLFLLVKALSAALYDRGYATSIVT 116 (554)
T ss_dssp --------CBCCCSSSSCCEEEECCSSSCCCSCSTTSTTSS--------SSCBCSTTHHHHHHHHHHHHHHTTCTTCEEE
T ss_pred CCCCCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 77754466888863899999984886589899998778625--------9846999999999999999997898468987
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCH---HHHHHHHHCCCCCEECCCCCCHHHHHCCCCCCCCCCC
Q ss_conf 2310124555541012202222100000123334445576---7777532116996211210000000000002344564
Q gi|254780772|r 260 SQVLFDKQKSGYVLIFQIDEGEIYTVGNISIQSTLQEIQK---KTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERP 336 (781)
Q Consensus 260 ~~~~~~~~~~~~~i~~~I~EG~~y~i~~i~i~g~~~~~~~---~~l~~~~~~k~G~~~~~~~~~~~~~~i~~~y~~~GY~ 336 (781)
.+ ..+-....|++.|.|| +++.|.++|+.. ... ..+...+++++|++|+..++++.++.|.+ .|+
T Consensus 117 ~~---~q~~~~g~l~i~v~eG---~i~~i~i~g~~~-~~~~~~~~~~~~~~~~~g~~~~~~~le~~~~~l~~----~g~- 184 (554)
T 2qdz_A 117 FV---PPGVVDGVLKLKVEWG---RIKGWLIDGKPL-EGTRDRMMVFSAMPGWQDKVLNVFDIDQAIYNINN----GGK- 184 (554)
T ss_dssp EE---EEEEETTEEEEEEECC---EEEEEEETTEEC-CSHHHHHHHHHHSTTCTTCBCCHHHHHHHHHHHCS----SSE-
T ss_pred EC---CCCCCCCEEEEEEEEC---EEEEEEEECCCC-CCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH----CCC-
T ss_conf 12---4347686799999985---155689832555-67136666776476777884678899999998750----586-
Q ss_pred CCCCCCCCCCCCCCCEEEEEEECCCCCCCEEE
Q ss_conf 20112332234344046655412333220110
Q gi|254780772|r 337 FVRVKTRINRDFAKRIVDIEYLIDQGSPLYVK 368 (781)
Q Consensus 337 fa~v~~~~~~d~~~~~vdi~~~I~eg~~~~i~ 368 (781)
++++... +....+..++.+.+.+.++..+.
T Consensus 185 ~~~v~l~--p~~~~g~~~~~v~v~~~~~~~~~ 214 (554)
T 2qdz_A 185 TGNITIV--PADEYGYSYLDLQLQRRALPRVS 214 (554)
T ss_dssp EEEEEEE--ECSSTTEEEEEEEEEECCSCEEE
T ss_pred CEEEEEE--ECCCCCCCEEEEEEEECCCCCCC
T ss_conf 2258986--07889852267898873555321