HHsearch results for GI: 254780772 and protein with PDBid: 3efc_A
>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane; 3.30A {Escherichia coli}
Probab=100.00 E-value=0 Score=586.17 Aligned_cols=387 Identities=26% Similarity=0.461 Sum_probs=367.0
Q ss_pred HCCCCEEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEEECCEEEEEE
Q ss_conf 11465268589996650079889999748789882688999999999996798003899986998999999365365799
Q gi|254780772|r 41 YGSNTSIVRRIEIRGATNVGKEVILSRIPVVVGQSISDADLDHAVKNIYAMGYFSNVKIKIVDSVLIIDLIERKIINHLF 120 (781)
Q Consensus 41 ~~~~~~~i~~I~i~G~~~i~~~~i~~~~~~~~G~~~~~~~i~~~i~~l~~~g~F~~v~~~~~~~~l~~~v~e~p~i~~i~ 120 (781)
+.|++++|++|+|+||+++++++|++++++++|++++++.+++++++||+||+|+||++..++..|+|.|+|+|+|.+|.
T Consensus 2 a~a~~~~I~~I~i~G~~~i~~~~i~~~~~~~~G~~~~~~~i~~~ik~L~~tg~F~~V~i~~~g~~l~i~V~E~p~i~~i~ 81 (395)
T 3efc_A 2 AMAEGFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDISNTIRALFATGNFEDVRVLRDGDTLLVQVKERPTIASIT 81 (395)
T ss_dssp ----CCCEEEEECSCCSSSCHHHHHHTCSCCTTSCCCTHHHHHHHHHHHHHCCEEEEEEECCSSEEEEEEEECCEEEEEE
T ss_pred CCCCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCEEEEEEEECCEEEEEE
T ss_conf 87777189789999984179999997468999993798999999999996798026999962999999999446160379
Q ss_pred EECCCCCCHHHHHHH---HHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEEEEEECCCCEEEE
Q ss_conf 956543698899887---30057863799999999999999999729700179987643389842588986036632467
Q gi|254780772|r 121 FSGNNNLKDDQLKMI---VRSRSAAAYDEDTVNADVHNIKQAYASIGYLNVMVKVQHHSISPTTLNITYVIEEGVKAKIN 197 (781)
Q Consensus 121 ~~Gn~~~~~~~l~~~---~~~~~g~~~~~~~~~~~~~~i~~~y~~~Gy~~a~V~~~~~~~~~~~v~i~~~I~EG~~~~I~ 197 (781)
|+||+.++++.|++. ++++.|+++++..+++++++|+++|.++||++|.|.++.++.++++++|+|.|+||++++|.
T Consensus 82 ~~Gn~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~~Gy~~~~v~~~~~~~~~~~v~v~~~I~Eg~~~kI~ 161 (395)
T 3efc_A 82 FSGNKSVKDDMLKQNLEASGVRVGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTPLPRNRVDLKLVFQEGVSAEIQ 161 (395)
T ss_dssp EESCTTSCHHHHHHHHHHHTCCSSSCCCGGGHHHHHHHHHHHHHTTTCCSCEEEEECCBCTTSEEEEEEEEECCCCCCCC
T ss_pred EECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCCCE
T ss_conf 99762134445433210134344441235668999999999998708632210237752467505544432005542213
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCEEE
Q ss_conf 78750443110122221110012211244-56664310233334578888887542322100123-10124555541012
Q gi|254780772|r 198 SIRFVGNKNYSHARLERVISIRTSGYFSF-GKTDVYSKERMSFDEEAIRAFYHDRGYAAVKVSSQ-VLFDKQKSGYVLIF 275 (781)
Q Consensus 198 ~I~f~Gn~~f~~~~L~~~~~~k~~~~~~~-~~~~~~~~~~l~~D~~~l~~~Y~~~GY~d~~V~~~-~~~~~~~~~~~i~~ 275 (781)
+|.|+||+.|++++|++.|.+++.+||++ ..++.|+++.++.|+++|++||+++||+|++|..+ +...+++..+.|+|
T Consensus 162 ~I~f~Gn~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~l~~~Y~~~Gy~d~~v~~~~~~~~~~~~~v~i~i 241 (395)
T 3efc_A 162 QINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYVTV 241 (395)
T ss_dssp CCEEESCCSSCTTTTGGGCCCCSSCCSCCSCTTTHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCCEECTTSCSEECEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCHHCCCHHHHHHHHHHCCEEEEEECCCEEEECCCCCCCEEEE
T ss_conf 78983353331155554443011100111013433222000031888888985567589997021689815777515753
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 20222210000012333444557677775321169962112100000000000023445642011233223434404665
Q gi|254780772|r 276 QIDEGEIYTVGNISIQSTLQEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVRVKTRINRDFAKRIVDI 355 (781)
Q Consensus 276 ~I~EG~~y~i~~i~i~g~~~~~~~~~l~~~~~~k~G~~~~~~~~~~~~~~i~~~y~~~GY~fa~v~~~~~~d~~~~~vdi 355 (781)
.|+||+||++++|+|.|+. ..+.+++.+.+.+++|++|+...++++.++|.+.|.++||++++|.+.+..+.++++|+|
T Consensus 242 ~i~EG~~y~v~~i~i~Gn~-~~~~~~l~~~l~~~~g~~f~~~~~~~~~~~i~~~y~~~GY~~a~v~~~~~~~~~~~~v~l 320 (395)
T 3efc_A 242 NITEGDQYKLSGVEVSGNL-AGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKTVKL 320 (395)
T ss_dssp EEECCCCCEEEEECCBSCC-TTCHHHHHHTCCCCSSCBCCHHHHHHHHHHHHHHHHHTTCSSCEEEEEEEEETTTTEEEE
T ss_pred ECCCCEEEEEEEEEEECCC-HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCEEEE
T ss_conf 0244404788776650572-000134555543204632340121002457899997517532124663045056738999
Q ss_pred EEECCCCCCCEEECCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 5412333220110033334320033210010010000000123444566677651012344533254435654
Q gi|254780772|r 356 EYLIDQGSPLYVKRIEIEGNDQSYDSVIRRELELSEGDPINYSMIERAKRRIMATGYFSEVNISQLPANDVSD 428 (781)
Q Consensus 356 ~~~I~eg~~~~i~~I~I~GN~~T~d~VIrrel~~~~Gd~~~~~~i~~s~~~L~~lg~F~~V~i~~~~~~~~~~ 428 (781)
.|.|+||+++||++|+|.||++|+|+||||+|.++|||+||+.++++|++||++||||++|++.+.|+++.+|
T Consensus 321 ~~~I~eg~~~~v~~I~I~GN~~T~d~vIrrel~~~~Gd~~~~~~l~~s~~~L~~lg~F~~V~i~~~~v~~~~D 393 (395)
T 3efc_A 321 RVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVDQGKERLNRLGFFETVDTDTQRVPGSPD 393 (395)
T ss_dssp EEEEECCCCCCC-------------------------------------------------------------
T ss_pred EEEECCCCCEEEEEEEEECCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
T ss_conf 9998448818999999988873655641320036998647999999999999846997600546403888989