HHsearch results for GI: 254780772 and protein with PDBid: 3efc_A

>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane; 3.30A {Escherichia coli}
Probab=100.00  E-value=9e-36  Score=250.00  Aligned_cols=312  Identities=18%  Similarity=0.290  Sum_probs=250.0

Q ss_pred             EEECCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEEEEEE
Q ss_conf             99365365799956543698899887300578637999999999999999997297001799876433898425889860
Q gi|254780772|r  110 LIERKIINHLFFSGNNNLKDDQLKMIVRSRSAAAYDEDTVNADVHNIKQAYASIGYLNVMVKVQHHSISPTTLNITYVIE  189 (781)
Q Consensus       110 v~e~p~i~~i~~~Gn~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~i~~~y~~~Gy~~a~V~~~~~~~~~~~v~i~~~I~  189 (781)
                      +.+..+|.+|+|+||+.++++.+...+++++|+.+++..+++++++|   |. .|||. +|+.+.   + + ..|++.|.
T Consensus         3 ~a~~~~I~~I~i~G~~~i~~~~i~~~~~~~~G~~~~~~~i~~~ik~L---~~-tg~F~-~V~i~~---~-g-~~l~i~V~   72 (395)
T 3efc_A            3 MAEGFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDISNTIRAL---FA-TGNFE-DVRVLR---D-G-DTLLVQVK   72 (395)
T ss_dssp             ---CCCEEEEECSCCSSSCHHHHHHTCSCCTTSCCCTHHHHHHHHHH---HH-HCCEE-EEEEEC---C-S-SEEEEEEE
T ss_pred             CCCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHH---HH-CCCEE-EEEEEE---C-C-CEEEEEEE
T ss_conf             77771897899999841799999974689999937989999999999---96-79802-699996---2-9-99999999


Q ss_pred             CCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             36632467787504431101222211100122112445666431023333457888888754232210012310124555
Q gi|254780772|r  190 EGVKAKINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYHDRGYAAVKVSSQVLFDKQKS  269 (781)
Q Consensus       190 EG~~~~I~~I~f~Gn~~f~~~~L~~~~~~k~~~~~~~~~~~~~~~~~l~~D~~~l~~~Y~~~GY~d~~V~~~~~~~~~~~  269 (781)
                      |.|  .|.+|.|+||+.+++..|++.+....     ...+..+++..++.+.++|+++|.++||+++.|..... ..+..
T Consensus        73 E~p--~i~~i~~~Gn~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~Y~~~Gy~~~~v~~~~~-~~~~~  144 (395)
T 3efc_A           73 ERP--TIASITFSGNKSVKDDMLKQNLEASG-----VRVGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVT-PLPRN  144 (395)
T ss_dssp             ECC--EEEEEEEESCTTSCHHHHHHHHHHHT-----CCSSSCCCGGGHHHHHHHHHHHHHTTTCCSCEEEEECC-BCTTS
T ss_pred             ECC--EEEEEEEECCCCCCHHHHHHHHHCCC-----CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE-ECCCC
T ss_conf             446--16037999762134445433210134-----34444123566899999999999870863221023775-24675


Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC---------CCEECCCCCCHHHHHCCCCCCCCCCCCCCC
Q ss_conf             54101220222210000012333444557677775321169---------962112100000000000023445642011
Q gi|254780772|r  270 GYVLIFQIDEGEIYTVGNISIQSTLQEIQKKTLLSLIRIRS---------GNLYNPQEIKESSEKISKYFFSGERPFVRV  340 (781)
Q Consensus       270 ~~~i~~~I~EG~~y~i~~i~i~g~~~~~~~~~l~~~~~~k~---------G~~~~~~~~~~~~~~i~~~y~~~GY~fa~v  340 (781)
                      .+.+++.|+||++.++.+|.|.|+. .++..+|.+.+..++         +..|+...++.+.++|.++|.++||..++|
T Consensus       145 ~v~v~~~I~Eg~~~kI~~I~f~Gn~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~l~~~Y~~~Gy~d~~v  223 (395)
T 3efc_A          145 RVDLKLVFQEGVSAEIQQINIVGNH-AFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNI  223 (395)
T ss_dssp             EEEEEEEEECCCCCCCCCCEEESCC-SSCTTTTGGGCCCCSSCCSCCSCTTTHHHHHHHHHHHHHHHHHHHHTTCTTCEE
T ss_pred             EEEEEEEEECCCCCCCEEEEEECCC-CCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCHHCCCHHHHHHHHHHCCEEEEEE
T ss_conf             0554443200554221378983353-331155554443011100111013433222000031888888985567589997


Q ss_pred             CC-CCCCCCCCCEEEEEEECCCCCCCEEECCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHH----HHCCCC
Q ss_conf             23-3223434404665541233322011003333432003321001001000000012344456667765----101234
Q gi|254780772|r  341 KT-RINRDFAKRIVDIEYLIDQGSPLYVKRIEIEGNDQSYDSVIRRELELSEGDPINYSMIERAKRRIMA----TGYFSE  415 (781)
Q Consensus       341 ~~-~~~~d~~~~~vdi~~~I~eg~~~~i~~I~I~GN~~T~d~VIrrel~~~~Gd~~~~~~i~~s~~~L~~----lg~F~~  415 (781)
                      .. ....+.+...+.++|.|+||+++++++|.|.||..-.+..+.+.+.++||++|+...+.+...+|..    .||.. 
T Consensus       224 ~~~~~~~~~~~~~v~i~i~i~EG~~y~v~~i~i~Gn~~~~~~~l~~~l~~~~g~~f~~~~~~~~~~~i~~~y~~~GY~~-  302 (395)
T 3efc_A          224 DSTQVSLTPDKKGIYVTVNITEGDQYKLSGVEVSGNLAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAY-  302 (395)
T ss_dssp             EECCCEECTTSCSEECEEEEECCCCCEEEEECCBSCCTTCHHHHHHTCCCCSSCBCCHHHHHHHHHHHHHHHHHTTCSS-
T ss_pred             CCCEEEECCCCCCCEEEEECCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCC-
T ss_conf             0216898157775157530244404788776650572000134555543204632340121002457899997517532-


Q ss_pred             CCCCCCC-CCCCCCCCCCCCCCCCCCC
Q ss_conf             4533254-4356543102332211221
Q gi|254780772|r  416 VNISQLP-ANDVSDYVILRVSVKQLSA  441 (781)
Q Consensus       416 V~i~~~~-~~~~~~~vdl~i~v~E~~t  441 (781)
                      +.+.+.+ ....+..++|.+.+.|.+.
T Consensus       303 a~v~~~~~~~~~~~~v~l~~~I~eg~~  329 (395)
T 3efc_A          303 PRVQSMPEINDADKTVKLRVNVDAGNR  329 (395)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEECCCC
T ss_pred             CCCCCCCEECCCCCEEEEEEEECCCCC
T ss_conf             124663045056738999999844881