HHsearch results for GI: 254780772 and protein with PDBid: 3mc9_A
>3mc9_A ALR2269 protein; polypeptide transport associated, potra, outer bacterial MEM protein membrane transport, beta barrel biogenesis, membran; 2.20A {Nostoc SP} PDB: 3mc8_A
Probab=99.67 E-value=2.6e-15 Score=116.05 Aligned_cols=152 Identities=14% Similarity=0.248 Sum_probs=105.6
Q ss_pred CCEEEEEEEEECCCCCCHHHHHH----HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 63246778750443110122221----11001221124456664310233334578888887542322100123101245
Q gi|254780772|r 192 VKAKINSIRFVGNKNYSHARLER----VISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYHDRGYAAVKVSSQVLFDKQ 267 (781)
Q Consensus 192 ~~~~I~~I~f~Gn~~f~~~~L~~----~~~~k~~~~~~~~~~~~~~~~~l~~D~~~l~~~Y~~~GY~d~~V~~~~~~~~~ 267 (781)
+++.|..|.|+||..+++.+|.. .|.+++ ++.|+++.++.|+++| | +-||| ..|+.. ....
T Consensus 60 ~~v~i~eV~i~G~~~~~~~eLe~~i~~~i~~r~--------G~~~s~~~l~~di~~L---~-~tG~F-~~V~~~--~~~~ 124 (316)
T 3mc9_A 60 PRVLVSEVLVRPQSGQLTPELETQVYNVIRTQP--------GRTTTRSQLQEDINAI---F-GTGFF-SNVQAS--PEDT 124 (316)
T ss_dssp CCEEEEEEEEEESSSCCCHHHHHHHHHHCCCCT--------TSEECHHHHHHHHHHH---H-HTSCE-EEEEEE--EEEE
T ss_pred CCEEEEEEEEEECCCCCCHHHHHHHHHHCCCCC--------CCCCCHHHHHHHHHHH---H-HCCCC-EEEEEE--EEEC
T ss_conf 715789999980678888899999998601689--------9827999999999999---9-75991-158999--8746
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCC-----CCCCHHHHHHHHHCCCCCEECCCCCCHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 555410122022221000001233344-----455767777532116996211210000000000002344564201123
Q gi|254780772|r 268 KSGYVLIFQIDEGEIYTVGNISIQSTL-----QEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVRVKT 342 (781)
Q Consensus 268 ~~~~~i~~~I~EG~~y~i~~i~i~g~~-----~~~~~~~l~~~~~~k~G~~~~~~~~~~~~~~i~~~y~~~GY~fa~v~~ 342 (781)
..++.|+|.|.|++. ++.|.|.|+. ..++.+.|++.+.+++|++|+...+++++++|.++|.++||.+|+|.+
T Consensus 125 ~~gv~l~~~v~e~p~--i~~i~i~Gn~~~~~~~ll~~~~l~~~~~~~~G~~~n~~~l~~~~~~I~~~Y~~~GY~~a~V~~ 202 (316)
T 3mc9_A 125 PLGVRVSFIVQPNPV--LSKVEIQANPGTNVPSVLPQATADEIFRAQYGKILNLRDLQEGIKELTKRYQDQGYVLANVVG 202 (316)
T ss_dssp TTEEEEEEEEEECCB--CCEEEEECCC----CCSSCTTHHHHHHGGGTTSBCCHHHHHHHHHHHHHHHHHTTCTTCEECS
T ss_pred CCCEEEEEEEEECCE--EEEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 985599999987878--999999744334644448899999875004798158889999999999999764912689986
Q ss_pred CCCCCCCCCEEEEEEECCCCC
Q ss_conf 322343440466554123332
Q gi|254780772|r 343 RINRDFAKRIVDIEYLIDQGS 363 (781)
Q Consensus 343 ~~~~d~~~~~vdi~~~I~eg~ 363 (781)
....+. ++. +.+.|.+|.
T Consensus 203 ~~~~~~-~g~--v~l~V~eg~ 220 (316)
T 3mc9_A 203 APQVSE-NGV--VTLQVAEGV 220 (316)
T ss_dssp SCEECT-TSE--EEEEEECCE
T ss_pred EEEECC-CCC--CEEEEEEEC
T ss_conf 324246-655--215898511