HHsearch results for GI: 254780772 and protein with PDBid: 3mc9_A

>3mc9_A ALR2269 protein; polypeptide transport associated, potra, outer bacterial MEM protein membrane transport, beta barrel biogenesis, membran; 2.20A {Nostoc SP} PDB: 3mc8_A
Probab=99.67  E-value=2.6e-15  Score=116.05  Aligned_cols=152  Identities=14%  Similarity=0.248  Sum_probs=105.6

Q ss_pred             CCEEEEEEEEECCCCCCHHHHHH----HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             63246778750443110122221----11001221124456664310233334578888887542322100123101245
Q gi|254780772|r  192 VKAKINSIRFVGNKNYSHARLER----VISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYHDRGYAAVKVSSQVLFDKQ  267 (781)
Q Consensus       192 ~~~~I~~I~f~Gn~~f~~~~L~~----~~~~k~~~~~~~~~~~~~~~~~l~~D~~~l~~~Y~~~GY~d~~V~~~~~~~~~  267 (781)
                      +++.|..|.|+||..+++.+|..    .|.+++        ++.|+++.++.|+++|   | +-||| ..|+..  ....
T Consensus        60 ~~v~i~eV~i~G~~~~~~~eLe~~i~~~i~~r~--------G~~~s~~~l~~di~~L---~-~tG~F-~~V~~~--~~~~  124 (316)
T 3mc9_A           60 PRVLVSEVLVRPQSGQLTPELETQVYNVIRTQP--------GRTTTRSQLQEDINAI---F-GTGFF-SNVQAS--PEDT  124 (316)
T ss_dssp             CCEEEEEEEEEESSSCCCHHHHHHHHHHCCCCT--------TSEECHHHHHHHHHHH---H-HTSCE-EEEEEE--EEEE
T ss_pred             CCEEEEEEEEEECCCCCCHHHHHHHHHHCCCCC--------CCCCCHHHHHHHHHHH---H-HCCCC-EEEEEE--EEEC
T ss_conf             715789999980678888899999998601689--------9827999999999999---9-75991-158999--8746


Q ss_pred             CCCCCEEEEECCCCCCCCCCCCCCCCC-----CCCCHHHHHHHHHCCCCCEECCCCCCHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             555410122022221000001233344-----455767777532116996211210000000000002344564201123
Q gi|254780772|r  268 KSGYVLIFQIDEGEIYTVGNISIQSTL-----QEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVRVKT  342 (781)
Q Consensus       268 ~~~~~i~~~I~EG~~y~i~~i~i~g~~-----~~~~~~~l~~~~~~k~G~~~~~~~~~~~~~~i~~~y~~~GY~fa~v~~  342 (781)
                      ..++.|+|.|.|++.  ++.|.|.|+.     ..++.+.|++.+.+++|++|+...+++++++|.++|.++||.+|+|.+
T Consensus       125 ~~gv~l~~~v~e~p~--i~~i~i~Gn~~~~~~~ll~~~~l~~~~~~~~G~~~n~~~l~~~~~~I~~~Y~~~GY~~a~V~~  202 (316)
T 3mc9_A          125 PLGVRVSFIVQPNPV--LSKVEIQANPGTNVPSVLPQATADEIFRAQYGKILNLRDLQEGIKELTKRYQDQGYVLANVVG  202 (316)
T ss_dssp             TTEEEEEEEEEECCB--CCEEEEECCC----CCSSCTTHHHHHHGGGTTSBCCHHHHHHHHHHHHHHHHHTTCTTCEECS
T ss_pred             CCCEEEEEEEEECCE--EEEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf             985599999987878--999999744334644448899999875004798158889999999999999764912689986


Q ss_pred             CCCCCCCCCEEEEEEECCCCC
Q ss_conf             322343440466554123332
Q gi|254780772|r  343 RINRDFAKRIVDIEYLIDQGS  363 (781)
Q Consensus       343 ~~~~d~~~~~vdi~~~I~eg~  363 (781)
                      ....+. ++.  +.+.|.+|.
T Consensus       203 ~~~~~~-~g~--v~l~V~eg~  220 (316)
T 3mc9_A          203 APQVSE-NGV--VTLQVAEGV  220 (316)
T ss_dssp             SCEECT-TSE--EEEEEECCE
T ss_pred             EEEECC-CCC--CEEEEEEEC
T ss_conf             324246-655--215898511