RPSBLAST alignment for GI: 254780772 and conserved domain: pfam07244
>gnl|CDD|148699 pfam07244, Surf_Ag_VNR, Surface antigen variable number repeat. This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure. Length = 78
Score = 50.4 bits (121), Expect = 2e-06
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 366 YVKRIEIEGNDQSY-DSVIRRELELSEGDPINYSMIERAKRRI----MATGY-FSEVNIS 419
+K I IEGN + D V+RREL+L EGD N +E R+ A GY F++V +
Sbjct: 2 KIKDINIEGNLKRTKDEVLRRELKLKEGDVFNREKLEEDIERLYDYYGALGYAFADVKVE 61
Query: 420 QLPANDVSDYVI 431
P D
Sbjct: 62 PEPDPKTVDLTF 73