RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780772|ref|YP_003065185.1| surface antigen (D15)
[Candidatus Liberibacter asiaticus str. psy62]
(781 letters)
>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane,
protein transport; 3.15A {Bordetella pertussis}
(A:1-45,A:210-554)
Length = 390
Score = 111 bits (278), Expect = 3e-25
Identities = 39/361 (10%), Positives = 80/361 (22%), Gaps = 37/361 (10%)
Query: 438 QLSAGSVGIATNYEVDKGMGVEGHIDDNNFFGQGYRARLAAGFG------RHAVQNYTFS 491
++S G + + N+ G L G A +NY
Sbjct: 48 RVSLGMDNSGPGTPENGRYKYNASVTANDLLGLNDTLGLYIGNRYYRDAGHDAERNYDLM 107
Query: 492 VEDPYFLGSPISAGFDLQKTHLEDGSLDIND-----ESAAVRMIVPITESISTSFKYDLR 546
P +L S ++ + + F
Sbjct: 108 YSVPLGRTRLDLQTGYSTYRNLLKTRYGQYQSAGNSRSFGLKATRLLYRDTRSQFSVYGG 167
Query: 547 FLQYGAISEKEKIPSIYTTLIEHGKFSSHSISQSIIYNTLDNPIVPRKG--MLISSSYDY 604
+ ++ S N + +G + Y
Sbjct: 168 LKLRQNKNYLAGTRLDVSSKHYSDVTVGMQYSTQRGANAYFGDLSFTRGVGVNNGKYAAY 227
Query: 605 AGFGGDSQYHRIGSRASYFYLLSDDSDIVGSLRFGYGCVIPSNKNLQLFDQFSVSSNYYL 664
G R ++ ++ + G S + L Q +V Y +
Sbjct: 228 DERGPQGNVSRFNGSLAWTRYMALAGQPI-QWASQLG-FQYSRQQLLNSYQITVGDEYTV 285
Query: 665 RGFAYKGIGPRVDKKYAIGGKIYSSASAAVSFPMPL--VPERAGLRGAFFVDSATLYANH 722
RG+ + + G S ++ P+ + ++A + D L
Sbjct: 286 RGYNL---------RTSQSGDSGVYLSNTLTVPVQFSLLGKQASVAPFVGADVGALK--- 333
Query: 723 VALGADKLEGNDSFWRVSTGVEIMWNSPLGMMGVYYGIPLRHREGDKI---QQFGFRIGN 779
+ + ++ P M Y P+ + G G
Sbjct: 334 -----SNHPDARTIRMAGLAAGVRFDLPYARMSFTYSKPVGAQPGGAPRAPVWLYINAGL 388
Query: 780 R 780
Sbjct: 389 S 389
>3efc_A OMP85, outer membrane protein assembly factor YAET; potra
fold, cell membrane, cell outer membrane; 3.30A
{Escherichia coli} (A:248-395)
Length = 148
Score = 97.0 bits (241), Expect = 8e-21
Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 1/146 (0%)
Query: 283 YTVGNISIQSTLQEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVRVKT 342
Y + + + + L +I G LYN ++ + + I K + RV++
Sbjct: 2 YKLSGVEVSGN-LAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQS 60
Query: 343 RINRDFAKRIVDIEYLIDQGSPLYVKRIEIEGNDQSYDSVIRRELELSEGDPINYSMIER 402
+ A + V + +D G+ YV++I EGND S D+V+RRE+ EG + ++++
Sbjct: 61 MPEINDADKTVKLRVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVDQ 120
Query: 403 AKRRIMATGYFSEVNISQLPANDVSD 428
K R+ G+F V+ D
Sbjct: 121 GKERLNRLGFFETVDTDTQRVPGSPD 146
Score = 78.9 bits (194), Expect = 2e-15
Identities = 26/155 (16%), Positives = 55/155 (35%), Gaps = 12/155 (7%)
Query: 193 KAKINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYHDRG 252
+ K++ + GN A +E++ I ++Y+ +++ E+ I+ G
Sbjct: 1 QYKLSGVEVSGNLAGHSAEIEQLTKIEPG--------ELYNGTKVTKMEDDIKKLLGRYG 52
Query: 253 YAAVKVSSQVLFDKQKSGYVLIFQIDEGEIYTVGNISIQSTLQEIQKKTLLSLIRIRSGN 312
YA +V S + L +D G + V I + + L +R G
Sbjct: 53 YAYPRVQSMPEINDADKTVKLRVNVDAGNRFYVRKIRFEGNDT-SKDAVLRREMRQMEGA 111
Query: 313 LYNPQEIKESSEKISKYFFSGERPFVRVKTRINRD 347
+ + E++++ G V T+
Sbjct: 112 WLGSDLVDQGKERLNR---LGFFETVDTDTQRVPG 143
Score = 38.9 bits (90), Expect = 0.002
Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 4/103 (3%)
Query: 5 TEDFRRIKRLLEK---YFPRSFQMGFIILFYAIFGLSAVYGSNTSI-VRRIEIRGATNVG 60
T+ IK+LL + +PR M I L + VR+I G
Sbjct: 38 TKMEDDIKKLLGRYGYAYPRVQSMPEINDADKTVKLRVNVDAGNRFYVRKIRFEGNDTSK 97
Query: 61 KEVILSRIPVVVGQSISDADLDHAVKNIYAMGYFSNVKIKIVD 103
V+ + + G + +D + + +G+F V
Sbjct: 98 DAVLRREMRQMEGAWLGSDLVDQGKERLNRLGFFETVDTDTQR 140
>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra
domain, protein transport; 2.20A {Escherichia coli K12}
PDB: 2qcz_A 2v9h_A (A:158-248)
Length = 91
Score = 82.9 bits (205), Expect = 1e-16
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 194 AKINSIRFVGNKNYSHARLERVISIRTSGYFS-FGKTDVYSKERMSFDEEAIRAFYHDRG 252
A+I I VGN ++ L +R + Y K++++ D E +R++Y DRG
Sbjct: 2 AEIQQINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRG 61
Query: 253 YAAVKVSS-QVLFDKQKSGYVLIFQIDEGE 281
YA + S QV K G + I EG+
Sbjct: 62 YARFNIDSTQVSLTPDKKGIYVTVNITEGD 91
Score = 49.0 bits (117), Expect = 2e-06
Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 11/87 (12%)
Query: 116 INHLFFSGNNNLKDDQLKMIVRSRSAAA---------YDEDTVNADVHNIKQAYASIGYL 166
I + GN+ D+L + R Y + + D+ ++ Y GY
Sbjct: 4 IQQINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYA 63
Query: 167 NVMVKVQHHSISP--TTLNITYVIEEG 191
+ S++P + +T I EG
Sbjct: 64 RFNIDSTQVSLTPDKKGIYVTVNITEG 90
Score = 31.7 bits (72), Expect = 0.34
Identities = 13/86 (15%), Positives = 31/86 (36%), Gaps = 3/86 (3%)
Query: 280 GEIYTVGN--ISIQSTLQEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPF 337
+I VGN + + Q + + + Y Q++ E + Y+
Sbjct: 5 QQINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYAR 64
Query: 338 VRVK-TRINRDFAKRIVDIEYLIDQG 362
+ T+++ K+ + + I +G
Sbjct: 65 FNIDSTQVSLTPDKKGIYVTVNITEG 90
Score = 29.0 bits (65), Expect = 2.2
Identities = 9/86 (10%), Positives = 26/86 (30%), Gaps = 14/86 (16%)
Query: 366 YVKRIEIEGNDQSYDSVIRRELELSE---------GDPINYSMIERAKRRI----MATGY 412
+++I I GN + +L + + + + GY
Sbjct: 3 EIQQINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGY 62
Query: 413 FS-EVNISQLPANDVSDYVILRVSVK 437
++ +Q+ + + V++
Sbjct: 63 ARFNIDSTQVSLTPDKKGIYVTVNIT 88
>3efc_A OMP85, outer membrane protein assembly factor YAET; potra
fold, cell membrane, cell outer membrane; 3.30A
{Escherichia coli} (A:156-247)
Length = 92
Score = 81.0 bits (200), Expect = 5e-16
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 192 VKAKINSIRFVGNKNYSHARLERVISIRTSGYFS-FGKTDVYSKERMSFDEEAIRAFYHD 250
V A+I I VGN ++ L +R + Y K++++ D E +R++Y D
Sbjct: 1 VSAEIQQINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLD 60
Query: 251 RGYAAVKVSS-QVLFDKQKSGYVLIFQIDEGE 281
RGYA + S QV K G + I EG+
Sbjct: 61 RGYARFNIDSTQVSLTPDKKGIYVTVNITEGD 92
Score = 47.9 bits (114), Expect = 5e-06
Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 11/90 (12%)
Query: 113 RKIINHLFFSGNNNLKDDQLKMIVRSRSAAA---------YDEDTVNADVHNIKQAYASI 163
I + GN+ D+L + R Y + + D+ ++ Y
Sbjct: 2 SAEIQQINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDR 61
Query: 164 GYLNVMVKVQHHSISP--TTLNITYVIEEG 191
GY + S++P + +T I EG
Sbjct: 62 GYARFNIDSTQVSLTPDKKGIYVTVNITEG 91
Score = 29.4 bits (66), Expect = 1.5
Identities = 9/86 (10%), Positives = 26/86 (30%), Gaps = 14/86 (16%)
Query: 366 YVKRIEIEGNDQSYDSVIRRELELSEG---------DPINYSMIERAKRRI----MATGY 412
+++I I GN + +L + + + + GY
Sbjct: 4 EIQQINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGY 63
Query: 413 F-SEVNISQLPANDVSDYVILRVSVK 437
++ +Q+ + + V++
Sbjct: 64 ARFNIDSTQVSLTPDKKGIYVTVNIT 89
>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane,
protein transport; 3.15A {Bordetella pertussis}
(A:46-209)
Length = 164
Score = 81.1 bits (199), Expect = 5e-16
Identities = 17/168 (10%), Positives = 46/168 (27%), Gaps = 7/168 (4%)
Query: 273 LIFQIDEGEIYTVGNISIQSTLQEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFS 332
G TV + + E + L++ + +++ + +S +
Sbjct: 4 RKPDATSGHTVTVHAVDLDFG-VEGRLFDPAPLVQDYLNRPLDNEQLFLLVKALSAALYD 62
Query: 333 GERPFVRVKTRINRDFAKRIVDIEYLIDQGSPLYVKRIEIEGNDQSYDSVIRRELELSEG 392
V ++ ++ G ++ + +
Sbjct: 63 RGYATSIVTFVPPGVVD---GVLKLKVEWGRIKGWLIDGKPLEGTRDRMMVFSAMPGWQD 119
Query: 393 DPINYSMIERAKRRIMATGYFSEVNISQLPANDVSDYVILRVSVKQLS 440
+N I++A I G + I D Y L + +++ +
Sbjct: 120 KVLNVFDIDQAIYNINNGGKTGNITIV---PADEYGYSYLDLQLQRRA 164
Score = 67.6 bits (164), Expect = 6e-12
Identities = 18/181 (9%), Positives = 49/181 (27%), Gaps = 19/181 (10%)
Query: 183 NITYVIEEGVKAKINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEE 242
G ++++ ++ E++ +
Sbjct: 3 ARKPDATSGHTVTVHAVDLDFGVEGRLFDPAPLVQDY--------LNRPLDNEQLFLLVK 54
Query: 243 AIRAFYHDRGYAAVKVSSQVLFDKQKSGYVLIFQIDEGEIYTVGNISIQSTLQEIQKKTL 302
A+ A +DRGYA V+ VL +++ G I + +
Sbjct: 55 ALSAALYDRGYATSIVTFVPPGVVD---GVLKLKVEWGRIKGWLIDGKPLE-GTRDRMMV 110
Query: 303 LSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVRVKTRINRDFAKRIVDIEYLIDQG 362
S + + N +I ++ I+ + ++ ++ + +
Sbjct: 111 FSAMPGWQDKVLNVFDIDQAIYNINNGGK-----TGNITIVPADEYGY--SYLDLQLQRR 163
Query: 363 S 363
+
Sbjct: 164 A 164
Score = 46.8 bits (110), Expect = 1e-05
Identities = 6/77 (7%), Positives = 21/77 (27%)
Query: 353 VDIEYLIDQGSPLYVKRIEIEGNDQSYDSVIRRELELSEGDPINYSMIERAKRRIMATGY 412
+ G + V ++++ + ++ P++ + + + A Y
Sbjct: 2 PARKPDATSGHTVTVHAVDLDFGVEGRLFDPAPLVQDYLNRPLDNEQLFLLVKALSAALY 61
Query: 413 FSEVNISQLPANDVSDY 429
S +
Sbjct: 62 DRGYATSIVTFVPPGVV 78
Score = 33.3 bits (75), Expect = 0.10
Identities = 18/109 (16%), Positives = 32/109 (29%), Gaps = 4/109 (3%)
Query: 9 RRIKRLLEKYFPRSFQMGFIILFYAIFGLSAVYGSNTSIVRRIEIRGATNVGKEVILSRI 68
L ++ + S V + ++ S +
Sbjct: 55 ALSAALYDRGYATSIVTFVPPGVVDGVLKLKVEWGRIKGWLIDGKPLEGTRDRMMVFSAM 114
Query: 69 PVVVGQSISDADLDHAVKNIYAMGYFSNVKIKIVD----SVLIIDLIER 113
P + ++ D+D A+ NI G N+ I D S L + L R
Sbjct: 115 PGWQDKVLNVFDIDQAIYNINNGGKTGNITIVPADEYGYSYLDLQLQRR 163
>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra
domain, protein transport; 2.20A {Escherichia coli K12}
PDB: 2qcz_A 2v9h_A (A:1-75)
Length = 75
Score = 70.5 bits (173), Expect = 7e-13
Identities = 20/78 (25%), Positives = 28/78 (35%), Gaps = 7/78 (8%)
Query: 360 DQGSPLYVKRIEIEGNDQSYDSVIRRELELSEGDPINYSMIERAKRRIMATGYFSEVNIS 419
VK I EG + + + GD +N I R + ATG F +V +
Sbjct: 3 HMAEGFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDISNTIRALFATGNFEDVRVL 62
Query: 420 QLPANDVSDYVILRVSVK 437
+ D L V VK
Sbjct: 63 R-------DGDTLLVQVK 73
Score = 67.0 bits (164), Expect = 7e-12
Identities = 17/75 (22%), Positives = 37/75 (49%)
Query: 39 AVYGSNTSIVRRIEIRGATNVGKEVILSRIPVVVGQSISDADLDHAVKNIYAMGYFSNVK 98
+ + +V+ I G V L +PV G +++D D+ + ++ ++A G F +V+
Sbjct: 1 GSHMAEGFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDISNTIRALFATGNFEDVR 60
Query: 99 IKIVDSVLIIDLIER 113
+ L++ + ER
Sbjct: 61 VLRDGDTLLVQVKER 75
Score = 28.5 bits (64), Expect = 2.8
Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 19/90 (21%)
Query: 190 EGVKAKINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYH 249
+ I F G + + + +RT D + E + IRA +
Sbjct: 4 MAEGFVVKDIHFEGLQRVAVGAALLSMPVRTG--------DTVNDEDI---SNTIRALFA 52
Query: 250 DRGYAAVKVSSQVLFDKQKSGYVLIFQIDE 279
+ V+V G L+ Q+ E
Sbjct: 53 TGNFEDVRVLRD--------GDTLLVQVKE 74
>3efc_A OMP85, outer membrane protein assembly factor YAET; potra
fold, cell membrane, cell outer membrane; 3.30A
{Escherichia coli} (A:1-73)
Length = 73
Score = 69.7 bits (171), Expect = 1e-12
Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 7/77 (9%)
Query: 361 QGSPLYVKRIEIEGNDQSYDSVIRRELELSEGDPINYSMIERAKRRIMATGYFSEVNISQ 420
VK I EG + + + GD +N I R + ATG F +V + +
Sbjct: 3 MAEGFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDISNTIRALFATGNFEDVRVLR 62
Query: 421 LPANDVSDYVILRVSVK 437
D L V VK
Sbjct: 63 -------DGDTLLVQVK 72
Score = 63.9 bits (156), Expect = 7e-11
Identities = 16/65 (24%), Positives = 33/65 (50%)
Query: 48 VRRIEIRGATNVGKEVILSRIPVVVGQSISDADLDHAVKNIYAMGYFSNVKIKIVDSVLI 107
V+ I G V L +PV G +++D D+ + ++ ++A G F +V++ L+
Sbjct: 9 VKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDISNTIRALFATGNFEDVRVLRDGDTLL 68
Query: 108 IDLIE 112
+ + E
Sbjct: 69 VQVKE 73
Score = 28.9 bits (65), Expect = 2.2
Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 19/90 (21%)
Query: 190 EGVKAKINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYH 249
+ I F G + + + +RT D + E + IRA +
Sbjct: 3 MAEGFVVKDIHFEGLQRVAVGAALLSMPVRTG--------DTVNDEDI---SNTIRALFA 51
Query: 250 DRGYAAVKVSSQVLFDKQKSGYVLIFQIDE 279
+ V+V G L+ Q+ E
Sbjct: 52 TGNFEDVRVLRD--------GDTLLVQVKE 73
>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra
domain, protein transport; 2.20A {Escherichia coli K12}
PDB: 2qcz_A 2v9h_A (A:249-335)
Length = 87
Score = 66.0 bits (161), Expect = 2e-11
Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 8/93 (8%)
Query: 193 KAKINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYHDRG 252
+ K++ + GN A +E++ I ++Y+ +++ E+ I+ G
Sbjct: 1 QYKLSGVEVSGNLAGHSAEIEQLTKIE--------PGELYNGTKVTKMEDDIKKLLGRYG 52
Query: 253 YAAVKVSSQVLFDKQKSGYVLIFQIDEGEIYTV 285
YA +V S + L +D G + V
Sbjct: 53 YAYPRVQSMPEINDADKTVKLRVNVDAGNRFYV 85
Score = 63.3 bits (154), Expect = 1e-10
Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Query: 283 YTVGNISIQSTLQEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVRVKT 342
Y + + + + L +I G LYN ++ + + I K + RV++
Sbjct: 2 YKLSGVEVSGN-LAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQS 60
Query: 343 RINRDFAKRIVDIEYLIDQGSPLYVKR 369
+ A + V + +D G+ YV++
Sbjct: 61 MPEINDADKTVKLRVNVDAGNRFYVRK 87
Score = 55.2 bits (133), Expect = 3e-08
Identities = 12/83 (14%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 116 INHLFFSGNNNLKDDQLKMIVRSRSAAAYDEDTVNADVHNIKQAYASIGYLNVMVKVQ-H 174
++ + SGN +++ + + Y+ V +IK+ GY V+
Sbjct: 4 LSGVEVSGNLAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPE 63
Query: 175 HSISPTTLNITYVIEEGVKAKIN 197
+ + T+ + ++ G + +
Sbjct: 64 INDADKTVKLRVNVDAGNRFYVR 86
Score = 38.6 bits (90), Expect = 0.003
Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 366 YVKRIEIEGNDQSYDSVIRRELELSEGDPINYSMIERAKRRI----MATGYFSEVNISQL 421
+ +E+ GN + + I + ++ G+ N + + + + I GY S
Sbjct: 3 KLSGVEVSGNLAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMP 62
Query: 422 PANDVSDYVILRVSVK 437
ND V LRV+V
Sbjct: 63 EINDADKTVKLRVNVD 78
>3efc_A OMP85, outer membrane protein assembly factor YAET; potra
fold, cell membrane, cell outer membrane; 3.30A
{Escherichia coli} (A:74-155)
Length = 82
Score = 62.5 bits (152), Expect = 2e-10
Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 6/88 (6%)
Query: 193 KAKINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYHDRG 252
+ I SI F GNK+ L++ + + + ++ E+ + FY+ G
Sbjct: 1 RPTIASITFSGNKSVKDDMLKQNLEASG-----VRVGESLDRTTIADIEKGLEDFYYSVG 55
Query: 253 YAAVKVSSQVLFDKQKSGYVLIFQIDEG 280
+ V + V + + EG
Sbjct: 56 KYSASVKAVVTPLPRNRVDL-KLVFQEG 82
Score = 56.4 bits (136), Expect = 1e-08
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 113 RKIINHLFFSGNNNLKDDQLKMIVRS---RSAAAYDEDTVNADVHNIKQAYASIGYLNVM 169
R I + FSGN ++KDD LK + + R + D T+ ++ Y S+G +
Sbjct: 1 RPTIASITFSGNKSVKDDMLKQNLEASGVRVGESLDRTTIADIEKGLEDFYYSVGKYSAS 60
Query: 170 VKVQHHSISPTTLNITYVIEEG 191
VK + +++ V +EG
Sbjct: 61 VKAVVTPLPRNRVDLKLVFQEG 82
Score = 36.7 bits (85), Expect = 0.010
Identities = 14/82 (17%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 283 YTVGNISIQ--STLQEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVRV 340
T+ +I+ ++++ K L +R G + I + + + +++S + V
Sbjct: 2 PTIASITFSGNKSVKDDMLKQNLEASGVRVGESLDRTTIADIEKGLEDFYYSVGKYSASV 61
Query: 341 KTRINRDFAKRIVDIEYLIDQG 362
K + R VD++ + +G
Sbjct: 62 KAVVTPLPRNR-VDLKLVFQEG 82
Score = 36.0 bits (83), Expect = 0.017
Identities = 12/77 (15%), Positives = 28/77 (36%), Gaps = 8/77 (10%)
Query: 366 YVKRIEIEGNDQSYDSVIRRELE---LSEGDPINYSMIERAKRRI----MATGY-FSEVN 417
+ I GN D ++++ LE + G+ ++ + I ++ + + G + V
Sbjct: 3 TIASITFSGNKSVKDDMLKQNLEASGVRVGESLDRTTIADIEKGLEDFYYSVGKYSASVK 62
Query: 418 ISQLPANDVSDYVILRV 434
P + L
Sbjct: 63 AVVTPLPRNRVDLKLVF 79
>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra
domain, protein transport; 2.20A {Escherichia coli K12}
PDB: 2qcz_A 2v9h_A (A:76-157)
Length = 82
Score = 61.3 bits (149), Expect = 4e-10
Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 6/85 (7%)
Query: 196 INSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYHDRGYAA 255
I SI F GNK+ L++ + + + ++ E+ + FY+ G +
Sbjct: 3 IASITFSGNKSVKDDMLKQNLEASG-----VRVGESLDRTTIADIEKGLEDFYYSVGKYS 57
Query: 256 VKVSSQVLFDKQKSGYVLIFQIDEG 280
V + V + + EG
Sbjct: 58 ASVKAVVTPLPRNRVDL-KLVFQEG 81
Score = 57.5 bits (139), Expect = 6e-09
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 115 IINHLFFSGNNNLKDDQLKMIVRS---RSAAAYDEDTVNADVHNIKQAYASIGYLNVMVK 171
I + FSGN ++KDD LK + + R + D T+ ++ Y S+G + VK
Sbjct: 2 TIASITFSGNKSVKDDMLKQNLEASGVRVGESLDRTTIADIEKGLEDFYYSVGKYSASVK 61
Query: 172 VQHHSISPTTLNITYVIEEGV 192
+ +++ V +EGV
Sbjct: 62 AVVTPLPRNRVDLKLVFQEGV 82
Score = 34.0 bits (78), Expect = 0.069
Identities = 13/81 (16%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 284 TVGNISIQ--STLQEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVRVK 341
T+ +I+ ++++ K L +R G + I + + + +++S + VK
Sbjct: 2 TIASITFSGNKSVKDDMLKQNLEASGVRVGESLDRTTIADIEKGLEDFYYSVGKYSASVK 61
Query: 342 TRINRDFAKRIVDIEYLIDQG 362
+ + VD++ + +G
Sbjct: 62 AVV-TPLPRNRVDLKLVFQEG 81
Score = 31.7 bits (72), Expect = 0.34
Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 8/76 (10%)
Query: 367 VKRIEIEGNDQSYDSVIRRELE---LSEGDPINYSMIERAKRRI----MATGY-FSEVNI 418
+ I GN D ++++ LE + G+ ++ + I ++ + + G + V
Sbjct: 3 IASITFSGNKSVKDDMLKQNLEASGVRVGESLDRTTIADIEKGLEDFYYSVGKYSASVKA 62
Query: 419 SQLPANDVSDYVILRV 434
P + L
Sbjct: 63 VVTPLPRNRVDLKLVF 78
>2vh2_A FTSQ, cell division protein FTSQ; potra, cell cycle; 3.4A
{Yersinia enterocolitica} (A:1-97)
Length = 97
Score = 39.7 bits (93), Expect = 0.001
Identities = 8/90 (8%), Positives = 28/90 (31%), Gaps = 3/90 (3%)
Query: 27 FIILFYAIFGLSAVYGSNTSIVRRIEIRGATNVGKEVILSRI--PVVVGQSISDADLDHA 84
+ + S+ + ++ + G + + + + + D++
Sbjct: 7 HHHHSSGLVPRGSHMASSRLPLSKLVVTGERHYTTNDDIRQAILSLGAPGTFMTQDVNII 66
Query: 85 VKNIYAMGYFSNVKIKIV-DSVLIIDLIER 113
+ I + + ++ L I L+E
Sbjct: 67 QQQIERLPWIQQASVRKQWPDELKIHLVEY 96
Score = 32.0 bits (73), Expect = 0.30
Identities = 7/75 (9%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
Query: 363 SPLY-VKRIEIEGNDQ--SYDSVIRRELELSEGDPINYSMIERAKRRIMATGYFSEVNIS 419
S + ++ + G + D + + L L + +++I + + ++
Sbjct: 23 SSRLPLSKLVVTGERHYTTNDDIRQAILSLGAPGTFMTQDVNIIQQQIERLPWIQQASVR 82
Query: 420 QLPANDVSDYVILRV 434
+ +++ +++ V
Sbjct: 83 KQWPDELKIHLVEYV 97
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
Length = 258
Score = 30.2 bits (68), Expect = 0.98
Identities = 22/143 (15%), Positives = 42/143 (29%), Gaps = 56/143 (39%)
Query: 371 EIEGNDQSYDSVI------RRELELSEGDPINYSMIERAKRRIMATGYFSEVNISQLPAN 424
E + + Y S +R+L E + I+ ++P+
Sbjct: 12 EHHSSVK-YASPNLNMKYRKRQLVTRE------AQIK--DWVENELEALKL-EAEEIPSE 61
Query: 425 DVSDYV------ILRVSVKQLSAGSVGIATNYEVDKGMGVEGHIDDNNFFGQG-----YR 473
D ++++ I + QL + G N+F+ + R
Sbjct: 62 DQNEFLLERTREIHNEAESQLR----------AAQQQWG-------NDFYKRDPRIAPLR 104
Query: 474 ARLAAGFGRHAVQNYTFSVEDPY 496
LA T+S +D Y
Sbjct: 105 GALA-----------TYS-KDSY 115
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin
cytoplasmic domain associated protein, structural
genomics; NMR {Homo sapiens} (A:)
Length = 107
Score = 28.5 bits (63), Expect = 3.5
Identities = 21/88 (23%), Positives = 31/88 (35%), Gaps = 5/88 (5%)
Query: 18 YFPRSFQ-MGF-IILFYAIFGLSAVYGSNTSIVRRIEIRG-ATNVGKEVILSRIPVVVGQ 74
R +GF II S V +I G A G I RI V G+
Sbjct: 13 VLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGR 72
Query: 75 SISDADLDHAVKNIYAMGYFSNVKIKIV 102
+S A D AV+ + ++++
Sbjct: 73 DLSRATHDQAVEAFKTAK--EPIVVQVL 98
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase
class II, ligase; 3.23A {Methanococcus maripaludis S2}
(A:550-614)
Length = 65
Score = 28.2 bits (62), Expect = 4.0
Identities = 4/6 (66%), Positives = 6/6 (100%)
Query: 96 NVKIKI 101
NV++KI
Sbjct: 1 NVEVKI 6
Score = 27.0 bits (59), Expect = 9.8
Identities = 4/7 (57%), Positives = 6/7 (85%)
Query: 167 NVMVKVQ 173
NV VK++
Sbjct: 1 NVEVKIE 7
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase
class II, ligase; 3.23A {Methanococcus maripaludis S2}
(B:550-611)
Length = 62
Score = 27.8 bits (61), Expect = 5.1
Identities = 4/6 (66%), Positives = 6/6 (100%)
Query: 96 NVKIKI 101
NV++KI
Sbjct: 1 NVEVKI 6
>2fge_A Atprep2;, zinc metalloprotease (insulinase family);
peptidasome, protease-peptide complex, hydrolase, plant
protein; 2.10A {Arabidopsis thaliana}
(A:540-670,A:732-792)
Length = 192
Score = 27.1 bits (60), Expect = 9.0
Identities = 27/135 (20%), Positives = 52/135 (38%), Gaps = 31/135 (22%)
Query: 203 GNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYHDRGYA-------A 255
G K+ + +L ++I +T G S S ++ + RG +
Sbjct: 66 GTKDLTFVQLNQLIGRKTGG-ISVY-PLTSSVR----GKDEPCSKIIVRGKSXAGRADDL 119
Query: 256 VKVSSQVLFDKQKSGYVLIFQIDEGEIYTVGNISIQSTLQEIQKKTLLSLIRIRSGNLYN 315
+ + +L + QK ++DE I S+L+EI++ SL+ R+G + N
Sbjct: 120 FNLXNCLLQEVQK-------KVDEDW------EGISSSLEEIRR----SLLA-RNGCIVN 161
Query: 316 PQEIKESSEKISKYF 330
+S + K
Sbjct: 162 XTADGKSLTNVEKSV 176
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.320 0.138 0.390
Gapped
Lambda K H
0.267 0.0695 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 5,892,899
Number of extensions: 274889
Number of successful extensions: 809
Number of sequences better than 10.0: 1
Number of HSP's gapped: 789
Number of HSP's successfully gapped: 54
Length of query: 781
Length of database: 4,956,049
Length adjustment: 95
Effective length of query: 686
Effective length of database: 1,744,574
Effective search space: 1196777764
Effective search space used: 1196777764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.2 bits)