RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780772|ref|YP_003065185.1| surface antigen (D15) [Candidatus Liberibacter asiaticus str. psy62] (781 letters) >2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} (A:1-45,A:210-554) Length = 390 Score = 111 bits (278), Expect = 3e-25 Identities = 39/361 (10%), Positives = 80/361 (22%), Gaps = 37/361 (10%) Query: 438 QLSAGSVGIATNYEVDKGMGVEGHIDDNNFFGQGYRARLAAGFG------RHAVQNYTFS 491 ++S G + + N+ G L G A +NY Sbjct: 48 RVSLGMDNSGPGTPENGRYKYNASVTANDLLGLNDTLGLYIGNRYYRDAGHDAERNYDLM 107 Query: 492 VEDPYFLGSPISAGFDLQKTHLEDGSLDIND-----ESAAVRMIVPITESISTSFKYDLR 546 P +L S ++ + + F Sbjct: 108 YSVPLGRTRLDLQTGYSTYRNLLKTRYGQYQSAGNSRSFGLKATRLLYRDTRSQFSVYGG 167 Query: 547 FLQYGAISEKEKIPSIYTTLIEHGKFSSHSISQSIIYNTLDNPIVPRKG--MLISSSYDY 604 + ++ S N + +G + Y Sbjct: 168 LKLRQNKNYLAGTRLDVSSKHYSDVTVGMQYSTQRGANAYFGDLSFTRGVGVNNGKYAAY 227 Query: 605 AGFGGDSQYHRIGSRASYFYLLSDDSDIVGSLRFGYGCVIPSNKNLQLFDQFSVSSNYYL 664 G R ++ ++ + G S + L Q +V Y + Sbjct: 228 DERGPQGNVSRFNGSLAWTRYMALAGQPI-QWASQLG-FQYSRQQLLNSYQITVGDEYTV 285 Query: 665 RGFAYKGIGPRVDKKYAIGGKIYSSASAAVSFPMPL--VPERAGLRGAFFVDSATLYANH 722 RG+ + + G S ++ P+ + ++A + D L Sbjct: 286 RGYNL---------RTSQSGDSGVYLSNTLTVPVQFSLLGKQASVAPFVGADVGALK--- 333 Query: 723 VALGADKLEGNDSFWRVSTGVEIMWNSPLGMMGVYYGIPLRHREGDKI---QQFGFRIGN 779 + + ++ P M Y P+ + G G Sbjct: 334 -----SNHPDARTIRMAGLAAGVRFDLPYARMSFTYSKPVGAQPGGAPRAPVWLYINAGL 388 Query: 780 R 780 Sbjct: 389 S 389 >3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane; 3.30A {Escherichia coli} (A:248-395) Length = 148 Score = 97.0 bits (241), Expect = 8e-21 Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 1/146 (0%) Query: 283 YTVGNISIQSTLQEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVRVKT 342 Y + + + + L +I G LYN ++ + + I K + RV++ Sbjct: 2 YKLSGVEVSGN-LAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQS 60 Query: 343 RINRDFAKRIVDIEYLIDQGSPLYVKRIEIEGNDQSYDSVIRRELELSEGDPINYSMIER 402 + A + V + +D G+ YV++I EGND S D+V+RRE+ EG + ++++ Sbjct: 61 MPEINDADKTVKLRVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVDQ 120 Query: 403 AKRRIMATGYFSEVNISQLPANDVSD 428 K R+ G+F V+ D Sbjct: 121 GKERLNRLGFFETVDTDTQRVPGSPD 146 Score = 78.9 bits (194), Expect = 2e-15 Identities = 26/155 (16%), Positives = 55/155 (35%), Gaps = 12/155 (7%) Query: 193 KAKINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYHDRG 252 + K++ + GN A +E++ I ++Y+ +++ E+ I+ G Sbjct: 1 QYKLSGVEVSGNLAGHSAEIEQLTKIEPG--------ELYNGTKVTKMEDDIKKLLGRYG 52 Query: 253 YAAVKVSSQVLFDKQKSGYVLIFQIDEGEIYTVGNISIQSTLQEIQKKTLLSLIRIRSGN 312 YA +V S + L +D G + V I + + L +R G Sbjct: 53 YAYPRVQSMPEINDADKTVKLRVNVDAGNRFYVRKIRFEGNDT-SKDAVLRREMRQMEGA 111 Query: 313 LYNPQEIKESSEKISKYFFSGERPFVRVKTRINRD 347 + + E++++ G V T+ Sbjct: 112 WLGSDLVDQGKERLNR---LGFFETVDTDTQRVPG 143 Score = 38.9 bits (90), Expect = 0.002 Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 4/103 (3%) Query: 5 TEDFRRIKRLLEK---YFPRSFQMGFIILFYAIFGLSAVYGSNTSI-VRRIEIRGATNVG 60 T+ IK+LL + +PR M I L + VR+I G Sbjct: 38 TKMEDDIKKLLGRYGYAYPRVQSMPEINDADKTVKLRVNVDAGNRFYVRKIRFEGNDTSK 97 Query: 61 KEVILSRIPVVVGQSISDADLDHAVKNIYAMGYFSNVKIKIVD 103 V+ + + G + +D + + +G+F V Sbjct: 98 DAVLRREMRQMEGAWLGSDLVDQGKERLNRLGFFETVDTDTQR 140 >2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A (A:158-248) Length = 91 Score = 82.9 bits (205), Expect = 1e-16 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 2/90 (2%) Query: 194 AKINSIRFVGNKNYSHARLERVISIRTSGYFS-FGKTDVYSKERMSFDEEAIRAFYHDRG 252 A+I I VGN ++ L +R + Y K++++ D E +R++Y DRG Sbjct: 2 AEIQQINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRG 61 Query: 253 YAAVKVSS-QVLFDKQKSGYVLIFQIDEGE 281 YA + S QV K G + I EG+ Sbjct: 62 YARFNIDSTQVSLTPDKKGIYVTVNITEGD 91 Score = 49.0 bits (117), Expect = 2e-06 Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 11/87 (12%) Query: 116 INHLFFSGNNNLKDDQLKMIVRSRSAAA---------YDEDTVNADVHNIKQAYASIGYL 166 I + GN+ D+L + R Y + + D+ ++ Y GY Sbjct: 4 IQQINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYA 63 Query: 167 NVMVKVQHHSISP--TTLNITYVIEEG 191 + S++P + +T I EG Sbjct: 64 RFNIDSTQVSLTPDKKGIYVTVNITEG 90 Score = 31.7 bits (72), Expect = 0.34 Identities = 13/86 (15%), Positives = 31/86 (36%), Gaps = 3/86 (3%) Query: 280 GEIYTVGN--ISIQSTLQEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPF 337 +I VGN + + Q + + + Y Q++ E + Y+ Sbjct: 5 QQINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYAR 64 Query: 338 VRVK-TRINRDFAKRIVDIEYLIDQG 362 + T+++ K+ + + I +G Sbjct: 65 FNIDSTQVSLTPDKKGIYVTVNITEG 90 Score = 29.0 bits (65), Expect = 2.2 Identities = 9/86 (10%), Positives = 26/86 (30%), Gaps = 14/86 (16%) Query: 366 YVKRIEIEGNDQSYDSVIRRELELSE---------GDPINYSMIERAKRRI----MATGY 412 +++I I GN + +L + + + + GY Sbjct: 3 EIQQINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGY 62 Query: 413 FS-EVNISQLPANDVSDYVILRVSVK 437 ++ +Q+ + + V++ Sbjct: 63 ARFNIDSTQVSLTPDKKGIYVTVNIT 88 >3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane; 3.30A {Escherichia coli} (A:156-247) Length = 92 Score = 81.0 bits (200), Expect = 5e-16 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 2/92 (2%) Query: 192 VKAKINSIRFVGNKNYSHARLERVISIRTSGYFS-FGKTDVYSKERMSFDEEAIRAFYHD 250 V A+I I VGN ++ L +R + Y K++++ D E +R++Y D Sbjct: 1 VSAEIQQINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLD 60 Query: 251 RGYAAVKVSS-QVLFDKQKSGYVLIFQIDEGE 281 RGYA + S QV K G + I EG+ Sbjct: 61 RGYARFNIDSTQVSLTPDKKGIYVTVNITEGD 92 Score = 47.9 bits (114), Expect = 5e-06 Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 11/90 (12%) Query: 113 RKIINHLFFSGNNNLKDDQLKMIVRSRSAAA---------YDEDTVNADVHNIKQAYASI 163 I + GN+ D+L + R Y + + D+ ++ Y Sbjct: 2 SAEIQQINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDR 61 Query: 164 GYLNVMVKVQHHSISP--TTLNITYVIEEG 191 GY + S++P + +T I EG Sbjct: 62 GYARFNIDSTQVSLTPDKKGIYVTVNITEG 91 Score = 29.4 bits (66), Expect = 1.5 Identities = 9/86 (10%), Positives = 26/86 (30%), Gaps = 14/86 (16%) Query: 366 YVKRIEIEGNDQSYDSVIRRELELSEG---------DPINYSMIERAKRRI----MATGY 412 +++I I GN + +L + + + + GY Sbjct: 4 EIQQINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGY 63 Query: 413 F-SEVNISQLPANDVSDYVILRVSVK 437 ++ +Q+ + + V++ Sbjct: 64 ARFNIDSTQVSLTPDKKGIYVTVNIT 89 >2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} (A:46-209) Length = 164 Score = 81.1 bits (199), Expect = 5e-16 Identities = 17/168 (10%), Positives = 46/168 (27%), Gaps = 7/168 (4%) Query: 273 LIFQIDEGEIYTVGNISIQSTLQEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFS 332 G TV + + E + L++ + +++ + +S + Sbjct: 4 RKPDATSGHTVTVHAVDLDFG-VEGRLFDPAPLVQDYLNRPLDNEQLFLLVKALSAALYD 62 Query: 333 GERPFVRVKTRINRDFAKRIVDIEYLIDQGSPLYVKRIEIEGNDQSYDSVIRRELELSEG 392 V ++ ++ G ++ + + Sbjct: 63 RGYATSIVTFVPPGVVD---GVLKLKVEWGRIKGWLIDGKPLEGTRDRMMVFSAMPGWQD 119 Query: 393 DPINYSMIERAKRRIMATGYFSEVNISQLPANDVSDYVILRVSVKQLS 440 +N I++A I G + I D Y L + +++ + Sbjct: 120 KVLNVFDIDQAIYNINNGGKTGNITIV---PADEYGYSYLDLQLQRRA 164 Score = 67.6 bits (164), Expect = 6e-12 Identities = 18/181 (9%), Positives = 49/181 (27%), Gaps = 19/181 (10%) Query: 183 NITYVIEEGVKAKINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEE 242 G ++++ ++ E++ + Sbjct: 3 ARKPDATSGHTVTVHAVDLDFGVEGRLFDPAPLVQDY--------LNRPLDNEQLFLLVK 54 Query: 243 AIRAFYHDRGYAAVKVSSQVLFDKQKSGYVLIFQIDEGEIYTVGNISIQSTLQEIQKKTL 302 A+ A +DRGYA V+ VL +++ G I + + Sbjct: 55 ALSAALYDRGYATSIVTFVPPGVVD---GVLKLKVEWGRIKGWLIDGKPLE-GTRDRMMV 110 Query: 303 LSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVRVKTRINRDFAKRIVDIEYLIDQG 362 S + + N +I ++ I+ + ++ ++ + + Sbjct: 111 FSAMPGWQDKVLNVFDIDQAIYNINNGGK-----TGNITIVPADEYGY--SYLDLQLQRR 163 Query: 363 S 363 + Sbjct: 164 A 164 Score = 46.8 bits (110), Expect = 1e-05 Identities = 6/77 (7%), Positives = 21/77 (27%) Query: 353 VDIEYLIDQGSPLYVKRIEIEGNDQSYDSVIRRELELSEGDPINYSMIERAKRRIMATGY 412 + G + V ++++ + ++ P++ + + + A Y Sbjct: 2 PARKPDATSGHTVTVHAVDLDFGVEGRLFDPAPLVQDYLNRPLDNEQLFLLVKALSAALY 61 Query: 413 FSEVNISQLPANDVSDY 429 S + Sbjct: 62 DRGYATSIVTFVPPGVV 78 Score = 33.3 bits (75), Expect = 0.10 Identities = 18/109 (16%), Positives = 32/109 (29%), Gaps = 4/109 (3%) Query: 9 RRIKRLLEKYFPRSFQMGFIILFYAIFGLSAVYGSNTSIVRRIEIRGATNVGKEVILSRI 68 L ++ + S V + ++ S + Sbjct: 55 ALSAALYDRGYATSIVTFVPPGVVDGVLKLKVEWGRIKGWLIDGKPLEGTRDRMMVFSAM 114 Query: 69 PVVVGQSISDADLDHAVKNIYAMGYFSNVKIKIVD----SVLIIDLIER 113 P + ++ D+D A+ NI G N+ I D S L + L R Sbjct: 115 PGWQDKVLNVFDIDQAIYNINNGGKTGNITIVPADEYGYSYLDLQLQRR 163 >2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A (A:1-75) Length = 75 Score = 70.5 bits (173), Expect = 7e-13 Identities = 20/78 (25%), Positives = 28/78 (35%), Gaps = 7/78 (8%) Query: 360 DQGSPLYVKRIEIEGNDQSYDSVIRRELELSEGDPINYSMIERAKRRIMATGYFSEVNIS 419 VK I EG + + + GD +N I R + ATG F +V + Sbjct: 3 HMAEGFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDISNTIRALFATGNFEDVRVL 62 Query: 420 QLPANDVSDYVILRVSVK 437 + D L V VK Sbjct: 63 R-------DGDTLLVQVK 73 Score = 67.0 bits (164), Expect = 7e-12 Identities = 17/75 (22%), Positives = 37/75 (49%) Query: 39 AVYGSNTSIVRRIEIRGATNVGKEVILSRIPVVVGQSISDADLDHAVKNIYAMGYFSNVK 98 + + +V+ I G V L +PV G +++D D+ + ++ ++A G F +V+ Sbjct: 1 GSHMAEGFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDISNTIRALFATGNFEDVR 60 Query: 99 IKIVDSVLIIDLIER 113 + L++ + ER Sbjct: 61 VLRDGDTLLVQVKER 75 Score = 28.5 bits (64), Expect = 2.8 Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 19/90 (21%) Query: 190 EGVKAKINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYH 249 + I F G + + + +RT D + E + IRA + Sbjct: 4 MAEGFVVKDIHFEGLQRVAVGAALLSMPVRTG--------DTVNDEDI---SNTIRALFA 52 Query: 250 DRGYAAVKVSSQVLFDKQKSGYVLIFQIDE 279 + V+V G L+ Q+ E Sbjct: 53 TGNFEDVRVLRD--------GDTLLVQVKE 74 >3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane; 3.30A {Escherichia coli} (A:1-73) Length = 73 Score = 69.7 bits (171), Expect = 1e-12 Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 7/77 (9%) Query: 361 QGSPLYVKRIEIEGNDQSYDSVIRRELELSEGDPINYSMIERAKRRIMATGYFSEVNISQ 420 VK I EG + + + GD +N I R + ATG F +V + + Sbjct: 3 MAEGFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDISNTIRALFATGNFEDVRVLR 62 Query: 421 LPANDVSDYVILRVSVK 437 D L V VK Sbjct: 63 -------DGDTLLVQVK 72 Score = 63.9 bits (156), Expect = 7e-11 Identities = 16/65 (24%), Positives = 33/65 (50%) Query: 48 VRRIEIRGATNVGKEVILSRIPVVVGQSISDADLDHAVKNIYAMGYFSNVKIKIVDSVLI 107 V+ I G V L +PV G +++D D+ + ++ ++A G F +V++ L+ Sbjct: 9 VKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDISNTIRALFATGNFEDVRVLRDGDTLL 68 Query: 108 IDLIE 112 + + E Sbjct: 69 VQVKE 73 Score = 28.9 bits (65), Expect = 2.2 Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 19/90 (21%) Query: 190 EGVKAKINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYH 249 + I F G + + + +RT D + E + IRA + Sbjct: 3 MAEGFVVKDIHFEGLQRVAVGAALLSMPVRTG--------DTVNDEDI---SNTIRALFA 51 Query: 250 DRGYAAVKVSSQVLFDKQKSGYVLIFQIDE 279 + V+V G L+ Q+ E Sbjct: 52 TGNFEDVRVLRD--------GDTLLVQVKE 73 >2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A (A:249-335) Length = 87 Score = 66.0 bits (161), Expect = 2e-11 Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 8/93 (8%) Query: 193 KAKINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYHDRG 252 + K++ + GN A +E++ I ++Y+ +++ E+ I+ G Sbjct: 1 QYKLSGVEVSGNLAGHSAEIEQLTKIE--------PGELYNGTKVTKMEDDIKKLLGRYG 52 Query: 253 YAAVKVSSQVLFDKQKSGYVLIFQIDEGEIYTV 285 YA +V S + L +D G + V Sbjct: 53 YAYPRVQSMPEINDADKTVKLRVNVDAGNRFYV 85 Score = 63.3 bits (154), Expect = 1e-10 Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 1/87 (1%) Query: 283 YTVGNISIQSTLQEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVRVKT 342 Y + + + + L +I G LYN ++ + + I K + RV++ Sbjct: 2 YKLSGVEVSGN-LAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQS 60 Query: 343 RINRDFAKRIVDIEYLIDQGSPLYVKR 369 + A + V + +D G+ YV++ Sbjct: 61 MPEINDADKTVKLRVNVDAGNRFYVRK 87 Score = 55.2 bits (133), Expect = 3e-08 Identities = 12/83 (14%), Positives = 32/83 (38%), Gaps = 1/83 (1%) Query: 116 INHLFFSGNNNLKDDQLKMIVRSRSAAAYDEDTVNADVHNIKQAYASIGYLNVMVKVQ-H 174 ++ + SGN +++ + + Y+ V +IK+ GY V+ Sbjct: 4 LSGVEVSGNLAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPE 63 Query: 175 HSISPTTLNITYVIEEGVKAKIN 197 + + T+ + ++ G + + Sbjct: 64 INDADKTVKLRVNVDAGNRFYVR 86 Score = 38.6 bits (90), Expect = 0.003 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 4/76 (5%) Query: 366 YVKRIEIEGNDQSYDSVIRRELELSEGDPINYSMIERAKRRI----MATGYFSEVNISQL 421 + +E+ GN + + I + ++ G+ N + + + + I GY S Sbjct: 3 KLSGVEVSGNLAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMP 62 Query: 422 PANDVSDYVILRVSVK 437 ND V LRV+V Sbjct: 63 EINDADKTVKLRVNVD 78 >3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane; 3.30A {Escherichia coli} (A:74-155) Length = 82 Score = 62.5 bits (152), Expect = 2e-10 Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 6/88 (6%) Query: 193 KAKINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYHDRG 252 + I SI F GNK+ L++ + + + ++ E+ + FY+ G Sbjct: 1 RPTIASITFSGNKSVKDDMLKQNLEASG-----VRVGESLDRTTIADIEKGLEDFYYSVG 55 Query: 253 YAAVKVSSQVLFDKQKSGYVLIFQIDEG 280 + V + V + + EG Sbjct: 56 KYSASVKAVVTPLPRNRVDL-KLVFQEG 82 Score = 56.4 bits (136), Expect = 1e-08 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 3/82 (3%) Query: 113 RKIINHLFFSGNNNLKDDQLKMIVRS---RSAAAYDEDTVNADVHNIKQAYASIGYLNVM 169 R I + FSGN ++KDD LK + + R + D T+ ++ Y S+G + Sbjct: 1 RPTIASITFSGNKSVKDDMLKQNLEASGVRVGESLDRTTIADIEKGLEDFYYSVGKYSAS 60 Query: 170 VKVQHHSISPTTLNITYVIEEG 191 VK + +++ V +EG Sbjct: 61 VKAVVTPLPRNRVDLKLVFQEG 82 Score = 36.7 bits (85), Expect = 0.010 Identities = 14/82 (17%), Positives = 35/82 (42%), Gaps = 3/82 (3%) Query: 283 YTVGNISIQ--STLQEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVRV 340 T+ +I+ ++++ K L +R G + I + + + +++S + V Sbjct: 2 PTIASITFSGNKSVKDDMLKQNLEASGVRVGESLDRTTIADIEKGLEDFYYSVGKYSASV 61 Query: 341 KTRINRDFAKRIVDIEYLIDQG 362 K + R VD++ + +G Sbjct: 62 KAVVTPLPRNR-VDLKLVFQEG 82 Score = 36.0 bits (83), Expect = 0.017 Identities = 12/77 (15%), Positives = 28/77 (36%), Gaps = 8/77 (10%) Query: 366 YVKRIEIEGNDQSYDSVIRRELE---LSEGDPINYSMIERAKRRI----MATGY-FSEVN 417 + I GN D ++++ LE + G+ ++ + I ++ + + G + V Sbjct: 3 TIASITFSGNKSVKDDMLKQNLEASGVRVGESLDRTTIADIEKGLEDFYYSVGKYSASVK 62 Query: 418 ISQLPANDVSDYVILRV 434 P + L Sbjct: 63 AVVTPLPRNRVDLKLVF 79 >2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A (A:76-157) Length = 82 Score = 61.3 bits (149), Expect = 4e-10 Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 6/85 (7%) Query: 196 INSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYHDRGYAA 255 I SI F GNK+ L++ + + + ++ E+ + FY+ G + Sbjct: 3 IASITFSGNKSVKDDMLKQNLEASG-----VRVGESLDRTTIADIEKGLEDFYYSVGKYS 57 Query: 256 VKVSSQVLFDKQKSGYVLIFQIDEG 280 V + V + + EG Sbjct: 58 ASVKAVVTPLPRNRVDL-KLVFQEG 81 Score = 57.5 bits (139), Expect = 6e-09 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 3/81 (3%) Query: 115 IINHLFFSGNNNLKDDQLKMIVRS---RSAAAYDEDTVNADVHNIKQAYASIGYLNVMVK 171 I + FSGN ++KDD LK + + R + D T+ ++ Y S+G + VK Sbjct: 2 TIASITFSGNKSVKDDMLKQNLEASGVRVGESLDRTTIADIEKGLEDFYYSVGKYSASVK 61 Query: 172 VQHHSISPTTLNITYVIEEGV 192 + +++ V +EGV Sbjct: 62 AVVTPLPRNRVDLKLVFQEGV 82 Score = 34.0 bits (78), Expect = 0.069 Identities = 13/81 (16%), Positives = 35/81 (43%), Gaps = 3/81 (3%) Query: 284 TVGNISIQ--STLQEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVRVK 341 T+ +I+ ++++ K L +R G + I + + + +++S + VK Sbjct: 2 TIASITFSGNKSVKDDMLKQNLEASGVRVGESLDRTTIADIEKGLEDFYYSVGKYSASVK 61 Query: 342 TRINRDFAKRIVDIEYLIDQG 362 + + VD++ + +G Sbjct: 62 AVV-TPLPRNRVDLKLVFQEG 81 Score = 31.7 bits (72), Expect = 0.34 Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 8/76 (10%) Query: 367 VKRIEIEGNDQSYDSVIRRELE---LSEGDPINYSMIERAKRRI----MATGY-FSEVNI 418 + I GN D ++++ LE + G+ ++ + I ++ + + G + V Sbjct: 3 IASITFSGNKSVKDDMLKQNLEASGVRVGESLDRTTIADIEKGLEDFYYSVGKYSASVKA 62 Query: 419 SQLPANDVSDYVILRV 434 P + L Sbjct: 63 VVTPLPRNRVDLKLVF 78 >2vh2_A FTSQ, cell division protein FTSQ; potra, cell cycle; 3.4A {Yersinia enterocolitica} (A:1-97) Length = 97 Score = 39.7 bits (93), Expect = 0.001 Identities = 8/90 (8%), Positives = 28/90 (31%), Gaps = 3/90 (3%) Query: 27 FIILFYAIFGLSAVYGSNTSIVRRIEIRGATNVGKEVILSRI--PVVVGQSISDADLDHA 84 + + S+ + ++ + G + + + + + D++ Sbjct: 7 HHHHSSGLVPRGSHMASSRLPLSKLVVTGERHYTTNDDIRQAILSLGAPGTFMTQDVNII 66 Query: 85 VKNIYAMGYFSNVKIKIV-DSVLIIDLIER 113 + I + + ++ L I L+E Sbjct: 67 QQQIERLPWIQQASVRKQWPDELKIHLVEY 96 Score = 32.0 bits (73), Expect = 0.30 Identities = 7/75 (9%), Positives = 29/75 (38%), Gaps = 3/75 (4%) Query: 363 SPLY-VKRIEIEGNDQ--SYDSVIRRELELSEGDPINYSMIERAKRRIMATGYFSEVNIS 419 S + ++ + G + D + + L L + +++I + + ++ Sbjct: 23 SSRLPLSKLVVTGERHYTTNDDIRQAILSLGAPGTFMTQDVNIIQQQIERLPWIQQASVR 82 Query: 420 QLPANDVSDYVILRV 434 + +++ +++ V Sbjct: 83 KQWPDELKIHLVEYV 97 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688) Length = 258 Score = 30.2 bits (68), Expect = 0.98 Identities = 22/143 (15%), Positives = 42/143 (29%), Gaps = 56/143 (39%) Query: 371 EIEGNDQSYDSVI------RRELELSEGDPINYSMIERAKRRIMATGYFSEVNISQLPAN 424 E + + Y S +R+L E + I+ ++P+ Sbjct: 12 EHHSSVK-YASPNLNMKYRKRQLVTRE------AQIK--DWVENELEALKL-EAEEIPSE 61 Query: 425 DVSDYV------ILRVSVKQLSAGSVGIATNYEVDKGMGVEGHIDDNNFFGQG-----YR 473 D ++++ I + QL + G N+F+ + R Sbjct: 62 DQNEFLLERTREIHNEAESQLR----------AAQQQWG-------NDFYKRDPRIAPLR 104 Query: 474 ARLAAGFGRHAVQNYTFSVEDPY 496 LA T+S +D Y Sbjct: 105 GALA-----------TYS-KDSY 115 >1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} (A:) Length = 107 Score = 28.5 bits (63), Expect = 3.5 Identities = 21/88 (23%), Positives = 31/88 (35%), Gaps = 5/88 (5%) Query: 18 YFPRSFQ-MGF-IILFYAIFGLSAVYGSNTSIVRRIEIRG-ATNVGKEVILSRIPVVVGQ 74 R +GF II S V +I G A G I RI V G+ Sbjct: 13 VLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGR 72 Query: 75 SISDADLDHAVKNIYAMGYFSNVKIKIV 102 +S A D AV+ + ++++ Sbjct: 73 DLSRATHDQAVEAFKTAK--EPIVVQVL 98 >2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} (A:550-614) Length = 65 Score = 28.2 bits (62), Expect = 4.0 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 96 NVKIKI 101 NV++KI Sbjct: 1 NVEVKI 6 Score = 27.0 bits (59), Expect = 9.8 Identities = 4/7 (57%), Positives = 6/7 (85%) Query: 167 NVMVKVQ 173 NV VK++ Sbjct: 1 NVEVKIE 7 >2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} (B:550-611) Length = 62 Score = 27.8 bits (61), Expect = 5.1 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 96 NVKIKI 101 NV++KI Sbjct: 1 NVEVKI 6 >2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} (A:540-670,A:732-792) Length = 192 Score = 27.1 bits (60), Expect = 9.0 Identities = 27/135 (20%), Positives = 52/135 (38%), Gaps = 31/135 (22%) Query: 203 GNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYHDRGYA-------A 255 G K+ + +L ++I +T G S S ++ + RG + Sbjct: 66 GTKDLTFVQLNQLIGRKTGG-ISVY-PLTSSVR----GKDEPCSKIIVRGKSXAGRADDL 119 Query: 256 VKVSSQVLFDKQKSGYVLIFQIDEGEIYTVGNISIQSTLQEIQKKTLLSLIRIRSGNLYN 315 + + +L + QK ++DE I S+L+EI++ SL+ R+G + N Sbjct: 120 FNLXNCLLQEVQK-------KVDEDW------EGISSSLEEIRR----SLLA-RNGCIVN 161 Query: 316 PQEIKESSEKISKYF 330 +S + K Sbjct: 162 XTADGKSLTNVEKSV 176 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.320 0.138 0.390 Gapped Lambda K H 0.267 0.0695 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 5,892,899 Number of extensions: 274889 Number of successful extensions: 809 Number of sequences better than 10.0: 1 Number of HSP's gapped: 789 Number of HSP's successfully gapped: 54 Length of query: 781 Length of database: 4,956,049 Length adjustment: 95 Effective length of query: 686 Effective length of database: 1,744,574 Effective search space: 1196777764 Effective search space used: 1196777764 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 58 (26.2 bits)