RPSBLAST alignment of GI: 254780772 and protein with PDBid: 2qdz
>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} Length = 554
Score = 137 bits (344), Expect = 1e-32
Identities = 63/543 (11%), Positives = 135/543 (24%), Gaps = 49/543 (9%)
Query: 259 SSQVLFDKQKSGYVLIFQIDEGEIYTVGNISIQSTLQEIQKKTLLSLIRIRSGNLYNPQE 318
++ + + G TV + + + E + L++ + ++
Sbjct: 35 PVELNPQSEAAAPARKPDATSGHTVTVHAVDLDFGV-EGRLFDPAPLVQDYLNRPLDNEQ 93
Query: 319 IKESSEKISKYFFSGERPFVRVKTRINRDFAKRIVDIEYLIDQGSPLYVKRIEIEGNDQS 378
+ + +S + V T + ++ ++ +
Sbjct: 94 LFLLVKALSAALYDRGYATSIV-TFVPPGVVDGVLKLKVEWGRIK--GWLIDGKPLEGTR 150
Query: 379 YDSVIRRELELSEGDPINYSMIERAKRRIMATGYFSEVNISQLPANDVSDYVILRVSVKQ 438
++ + + +N I++A I G + I S +
Sbjct: 151 DRMMVFSAMPGWQDKVLNVFDIDQAIYNINNGGKTGNITIVPADEYGYSYLDLQLQRRAL 210
Query: 439 LSAGSVGIATNYEVDKGMGVEGH--IDDNNFFGQGYRARLAAG------FGRHAVQNYTF 490
+ + + + + N+ G L G G A +NY
Sbjct: 211 PRVSLGMDNSGPGTPENGRYKYNASVTANDLLGLNDTLGLYIGNRYYRDAGHDAERNYDL 270
Query: 491 SVEDPYF---LGSPISAGFDLQKTHLEDGSLDINDESAAVRM----IVPITESISTSFKY 543
P L G S + + ++ S
Sbjct: 271 MYSVPLGRTRLDLQTGYSTYRNLLKTRYGQYQSAGNSRSFGLKATRLLYRDTRSQFSVYG 330
Query: 544 DLRFLQYGAISEKEKIPSIYTTLIEHGKFSSHSISQSIIYNTLDNPIVPRKGMLISSSYD 603
L+ Q ++ + +S + D G+
Sbjct: 331 GLKLRQNKNYLAGTRLDVSSKHYSDVTVGMQYSTQRGANAYFGDLSFTRGVGVNNGKYAA 390
Query: 604 YAGFGGDSQYHRIGSRASYFY---LLSDDSDIVGSLRFGYGCVIPSNKNLQLFDQFSVSS 660
Y G R ++ L L F Y S + L Q +V
Sbjct: 391 YDERGPQGNVSRFNGSLAWTRYMALAGQPIQWASQLGFQY-----SRQQLLNSYQITVGD 445
Query: 661 NYYLRGFAYKGIGPRVDKKYAIGGK--IYSSASAAVSFPMPLVPERAGLRGAFFVDSATL 718
Y +RG+ + + G +Y S + V L+ ++A + D L
Sbjct: 446 EYTVRGYNLRT---------SQSGDSGVYLSNTLTVPVQFSLLGKQASVAPFVGADVGAL 496
Query: 719 YANHVALGADKLEGNDSFWRVSTGVEIMWNSPLGMMGVYYGIPLRHREGDKIQ---QFGF 775
+NH + + ++ P M Y P+ + G +
Sbjct: 497 KSNH--------PDARTIRMAGLAAGVRFDLPYARMSFTYSKPVGAQPGGAPRAPVWLYI 548
Query: 776 RIG 778
G
Sbjct: 549 NAG 551