RPSBLAST alignment of GI: 254780772 and protein with PDBid: 3efc
>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane; 3.30A {Escherichia coli} Length = 395
Score = 210 bits (535), Expect = 1e-54
Identities = 103/391 (26%), Positives = 183/391 (46%), Gaps = 6/391 (1%)
Query: 43 SNTSIVRRIEIRGATNVGKEVILSRIPVVVGQSISDADLDHAVKNIYAMGYFSNVKIKIV 102
+ +V+ I G V L +PV G +++D D+ + ++ ++A G F +V++
Sbjct: 4 AEGFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDISNTIRALFATGNFEDVRVLRD 63
Query: 103 DSVLIIDLIERKIINHLFFSGNNNLKDDQLKMIVRSRSAAA---YDEDTVNADVHNIKQA 159
L++ + ER I + FSGN ++KDD LK + + D T+ ++
Sbjct: 64 GDTLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVRVGESLDRTTIADIEKGLEDF 123
Query: 160 YASIGYLNVMVKVQHHSISPTTLNITYVIEEGVKAKINSIRFVGNKNYSHARLERVISIR 219
Y S+G + VK + +++ V +EGV A+I I VGN ++ L +R
Sbjct: 124 YYSVGKYSASVKAVVTPLPRNRVDLKLVFQEGVSAEIQQINIVGNHAFTTDELISHFQLR 183
Query: 220 TSGYFSFGKTD-VYSKERMSFDEEAIRAFYHDRGYAAVKV-SSQVLFDKQKSGYVLIFQI 277
+ D Y K++++ D E +R++Y DRGYA + S+QV K G + I
Sbjct: 184 DEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYVTVNI 243
Query: 278 DEGEIYTVGNISIQSTLQEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPF 337
EG+ Y + + + L + L +I G LYN ++ + + I K +
Sbjct: 244 TEGDQYKLSGVEVSGNL-AGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAY 302
Query: 338 VRVKTRINRDFAKRIVDIEYLIDQGSPLYVKRIEIEGNDQSYDSVIRRELELSEGDPINY 397
RV++ + A + V + +D G+ YV++I EGND S D+V+RRE+ EG +
Sbjct: 303 PRVQSMPEINDADKTVKLRVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGS 362
Query: 398 SMIERAKRRIMATGYFSEVNISQLPANDVSD 428
++++ K R+ G+F V+ D
Sbjct: 363 DLVDQGKERLNRLGFFETVDTDTQRVPGSPD 393