RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780772|ref|YP_003065185.1| surface antigen (D15) [Candidatus Liberibacter asiaticus str. psy62] (781 letters) >3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane; 3.30A {Escherichia coli} Length = 395 Score = 210 bits (535), Expect = 1e-54 Identities = 103/391 (26%), Positives = 183/391 (46%), Gaps = 6/391 (1%) Query: 43 SNTSIVRRIEIRGATNVGKEVILSRIPVVVGQSISDADLDHAVKNIYAMGYFSNVKIKIV 102 + +V+ I G V L +PV G +++D D+ + ++ ++A G F +V++ Sbjct: 4 AEGFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDISNTIRALFATGNFEDVRVLRD 63 Query: 103 DSVLIIDLIERKIINHLFFSGNNNLKDDQLKMIVRSRSAAA---YDEDTVNADVHNIKQA 159 L++ + ER I + FSGN ++KDD LK + + D T+ ++ Sbjct: 64 GDTLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVRVGESLDRTTIADIEKGLEDF 123 Query: 160 YASIGYLNVMVKVQHHSISPTTLNITYVIEEGVKAKINSIRFVGNKNYSHARLERVISIR 219 Y S+G + VK + +++ V +EGV A+I I VGN ++ L +R Sbjct: 124 YYSVGKYSASVKAVVTPLPRNRVDLKLVFQEGVSAEIQQINIVGNHAFTTDELISHFQLR 183 Query: 220 TSGYFSFGKTD-VYSKERMSFDEEAIRAFYHDRGYAAVKV-SSQVLFDKQKSGYVLIFQI 277 + D Y K++++ D E +R++Y DRGYA + S+QV K G + I Sbjct: 184 DEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYVTVNI 243 Query: 278 DEGEIYTVGNISIQSTLQEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPF 337 EG+ Y + + + L + L +I G LYN ++ + + I K + Sbjct: 244 TEGDQYKLSGVEVSGNL-AGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAY 302 Query: 338 VRVKTRINRDFAKRIVDIEYLIDQGSPLYVKRIEIEGNDQSYDSVIRRELELSEGDPINY 397 RV++ + A + V + +D G+ YV++I EGND S D+V+RRE+ EG + Sbjct: 303 PRVQSMPEINDADKTVKLRVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGS 362 Query: 398 SMIERAKRRIMATGYFSEVNISQLPANDVSD 428 ++++ K R+ G+F V+ D Sbjct: 363 DLVDQGKERLNRLGFFETVDTDTQRVPGSPD 393 >2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} Length = 554 Score = 137 bits (344), Expect = 1e-32 Identities = 63/543 (11%), Positives = 135/543 (24%), Gaps = 49/543 (9%) Query: 259 SSQVLFDKQKSGYVLIFQIDEGEIYTVGNISIQSTLQEIQKKTLLSLIRIRSGNLYNPQE 318 ++ + + G TV + + + E + L++ + ++ Sbjct: 35 PVELNPQSEAAAPARKPDATSGHTVTVHAVDLDFGV-EGRLFDPAPLVQDYLNRPLDNEQ 93 Query: 319 IKESSEKISKYFFSGERPFVRVKTRINRDFAKRIVDIEYLIDQGSPLYVKRIEIEGNDQS 378 + + +S + V T + ++ ++ + Sbjct: 94 LFLLVKALSAALYDRGYATSIV-TFVPPGVVDGVLKLKVEWGRIK--GWLIDGKPLEGTR 150 Query: 379 YDSVIRRELELSEGDPINYSMIERAKRRIMATGYFSEVNISQLPANDVSDYVILRVSVKQ 438 ++ + + +N I++A I G + I S + Sbjct: 151 DRMMVFSAMPGWQDKVLNVFDIDQAIYNINNGGKTGNITIVPADEYGYSYLDLQLQRRAL 210 Query: 439 LSAGSVGIATNYEVDKGMGVEGH--IDDNNFFGQGYRARLAAG------FGRHAVQNYTF 490 + + + + + N+ G L G G A +NY Sbjct: 211 PRVSLGMDNSGPGTPENGRYKYNASVTANDLLGLNDTLGLYIGNRYYRDAGHDAERNYDL 270 Query: 491 SVEDPYF---LGSPISAGFDLQKTHLEDGSLDINDESAAVRM----IVPITESISTSFKY 543 P L G S + + ++ S Sbjct: 271 MYSVPLGRTRLDLQTGYSTYRNLLKTRYGQYQSAGNSRSFGLKATRLLYRDTRSQFSVYG 330 Query: 544 DLRFLQYGAISEKEKIPSIYTTLIEHGKFSSHSISQSIIYNTLDNPIVPRKGMLISSSYD 603 L+ Q ++ + +S + D G+ Sbjct: 331 GLKLRQNKNYLAGTRLDVSSKHYSDVTVGMQYSTQRGANAYFGDLSFTRGVGVNNGKYAA 390 Query: 604 YAGFGGDSQYHRIGSRASYFY---LLSDDSDIVGSLRFGYGCVIPSNKNLQLFDQFSVSS 660 Y G R ++ L L F Y S + L Q +V Sbjct: 391 YDERGPQGNVSRFNGSLAWTRYMALAGQPIQWASQLGFQY-----SRQQLLNSYQITVGD 445 Query: 661 NYYLRGFAYKGIGPRVDKKYAIGGK--IYSSASAAVSFPMPLVPERAGLRGAFFVDSATL 718 Y +RG+ + + G +Y S + V L+ ++A + D L Sbjct: 446 EYTVRGYNLRT---------SQSGDSGVYLSNTLTVPVQFSLLGKQASVAPFVGADVGAL 496 Query: 719 YANHVALGADKLEGNDSFWRVSTGVEIMWNSPLGMMGVYYGIPLRHREGDKIQ---QFGF 775 +NH + + ++ P M Y P+ + G + Sbjct: 497 KSNH--------PDARTIRMAGLAAGVRFDLPYARMSFTYSKPVGAQPGGAPRAPVWLYI 548 Query: 776 RIG 778 G Sbjct: 549 NAG 551 Score = 39.6 bits (91), Expect = 0.002 Identities = 10/114 (8%), Positives = 26/114 (22%), Gaps = 2/114 (1%) Query: 112 ERKIINHLFFSGNNNLKDDQLKMIVRSRSAAAYDEDTVNADVHNIKQAYASIGYLNVMVK 171 ++ + + +V+ D + + V + A GY +V Sbjct: 57 HTVTVHAVDLDFGVEGRLFDPAPLVQDYLNRPLDNEQLFLLVKALSAALYDRGYATSIVT 116 Query: 172 VQHHSISPTTLNITYVIEEGVKAKINSIRFVGNKNYSHARLERVISIRTSGYFS 225 + L + +E G + + + Sbjct: 117 FVPPGVVDGVLKL--KVEWGRIKGWLIDGKPLEGTRDRMMVFSAMPGWQDKVLN 168 Score = 34.2 bits (77), Expect = 0.12 Identities = 14/121 (11%), Positives = 35/121 (28%), Gaps = 10/121 (8%) Query: 48 VRRIEIRGATNVGKEVILSRIPVVVGQSISDADLDHAVKNI--------YAMGYFSNVKI 99 V +++ + + + + + L VK + YA + V Sbjct: 61 VHAVDLDFGVEGRLFDPAPLVQDYLNRPLDNEQLFLLVKALSAALYDRGYATSIVTFVPP 120 Query: 100 KIVDSVLIIDLIERKI--INHLFFSGNNNLKDDQLKMIVRSRSAAAYDEDTVNADVHNIK 157 +VD VL + + +I + + + ++ ++NI Sbjct: 121 GVVDGVLKLKVEWGRIKGWLIDGKPLEGTRDRMMVFSAMPGWQDKVLNVFDIDQAIYNIN 180 Query: 158 Q 158 Sbjct: 181 N 181 >2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A Length = 335 Score = 127 bits (319), Expect = 9e-30 Identities = 79/336 (23%), Positives = 150/336 (44%), Gaps = 6/336 (1%) Query: 39 AVYGSNTSIVRRIEIRGATNVGKEVILSRIPVVVGQSISDADLDHAVKNIYAMGYFSNVK 98 + + +V+ I G V L +PV G +++D D+ + ++ ++A G F +V+ Sbjct: 1 GSHMAEGFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDISNTIRALFATGNFEDVR 60 Query: 99 IKIVDSVLIIDLIERKIINHLFFSGNNNLKDDQLKMIVRSRSAAA---YDEDTVNADVHN 155 + L++ + ER I + FSGN ++KDD LK + + D T+ Sbjct: 61 VLRDGDTLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVRVGESLDRTTIADIEKG 120 Query: 156 IKQAYASIGYLNVMVKVQHHSISPTTLNITYVIEEGVKAKINSIRFVGNK-NYSHARLER 214 ++ Y S+G + VK + +++ V +EGV A+I I VGN + + Sbjct: 121 LEDFYYSVGKYSASVKAVVTPLPRNRVDLKLVFQEGVSAEIQQINIVGNHAFTTDELISH 180 Query: 215 VISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYHDRGYAAVKVSSQVL-FDKQKSGYVL 273 +++ Y K++++ D E +R++Y DRGYA + S + K G + Sbjct: 181 FQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYV 240 Query: 274 IFQIDEGEIYTVGNISIQSTLQEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSG 333 I EG+ Y + + + L + L +I G LYN ++ + + I K Sbjct: 241 TVNITEGDQYKLSGVEVSGNL-AGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRY 299 Query: 334 ERPFVRVKTRINRDFAKRIVDIEYLIDQGSPLYVKR 369 + RV++ + A + V + +D G+ YV++ Sbjct: 300 GYAYPRVQSMPEINDADKTVKLRVNVDAGNRFYVRK 335 Score = 43.5 bits (101), Expect = 2e-04 Identities = 15/53 (28%), Positives = 22/53 (41%) Query: 367 VKRIEIEGNDQSYDSVIRRELELSEGDPINYSMIERAKRRIMATGYFSEVNIS 419 VK I EG + + + GD +N I R + ATG F +V + Sbjct: 10 VKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDISNTIRALFATGNFEDVRVL 62 >3mc9_A ALR2269 protein; polypeptide transport associated, potra, outer bacterial MEM protein membrane transport, beta barrel biogenesis, membran; 2.20A {Nostoc SP} PDB: 3mc8_A Length = 316 Score = 107 bits (267), Expect = 1e-23 Identities = 39/257 (15%), Positives = 89/257 (34%), Gaps = 24/257 (9%) Query: 193 KAKINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYHDRG 252 + ++ + LE + ++ ++ +E I A + Sbjct: 61 RVLVSEVLVRPQSGQLTPELETQVY----NVIRTQPGRTTTRSQL---QEDINAIFGTGF 113 Query: 253 YAAVKVSSQVLFDKQKSGYVLIFQIDEGEIYTVGNIS---IQSTLQEIQKKTLLSLIRIR 309 ++ V+ S + G + F + + + I + + + T + R + Sbjct: 114 FSNVQAS----PEDTPLGVRVSFIVQPNPVLSKVEIQANPGTNVPSVLPQATADEIFRAQ 169 Query: 310 SGNLYNPQEIKESSEKISKYFFSGERPFVRVKTRINRDFAK---------RIVDIEYLID 360 G + N ++++E ++++K + V + +I Sbjct: 170 YGKILNLRDLQEGIKELTKRYQDQGYVLANVVGAPQVSENGVVTLQVAEGVVENISVRFR 229 Query: 361 QGSPLYVKRIEIEGNDQSYDSVIRRELELSEGDPINYSMIERAKRRIMATGYFSEVNISQ 420 V ++ D +I RE+EL G N + +++ +R+ TG F +VN+S Sbjct: 230 NKEGQDVNEQGQPIRGRTQDYIITREVELKPGQVFNRNTVQKDLQRVFGTGLFEDVNVSL 289 Query: 421 LPANDVSDYVILRVSVK 437 P D V + V+V Sbjct: 290 DPGTD-PTKVNVVVNVV 305 Score = 93.0 bits (230), Expect = 2e-19 Identities = 28/252 (11%), Positives = 78/252 (30%), Gaps = 21/252 (8%) Query: 47 IVRRIEIRGATNVG----KEVILSRIPVVVGQSISDADLDHAVKNIYAMGYFSNVKIKIV 102 +V + +R + + + + I G++ + + L + I+ G+FSNV+ Sbjct: 63 LVSEVLVRPQSGQLTPELETQVYNVIRTQPGRTTTRSQLQEDINAIFGTGFFSNVQASPE 122 Query: 103 DS----VLIIDLIERKIINHLFFSGNNNLKDD------QLKMIVRSRSAAAYDEDTVNAD 152 D+ + + +++ + N I R++ + + Sbjct: 123 DTPLGVRVSFIVQPNPVLSKVEIQANPGTNVPSVLPQATADEIFRAQYGKILNLRDLQEG 182 Query: 153 VHNIKQAYASIGYLNVMVKVQHHSISPTTLNITYVIEEGVKAKINSIRFVGNKNYSHARL 212 + + + Y GY+ V + + + G + Sbjct: 183 IKELTKRYQDQGYVLANVVGAPQVSENGVVTLQVAEGVVENISVRFRNKEGQDVNEQGQP 242 Query: 213 ERVISIRT--SGYFSFGKTDVYSKERMSFDEEAIRAFYHDRGYAAVKVSSQVLFDKQKSG 270 R + + V+++ + ++ ++ + + V VS D K Sbjct: 243 IRGRTQDYIITREVELKPGQVFNRNTV---QKDLQRVFGTGLFEDVNVSLDPGTDPTKV- 298 Query: 271 YVLIFQIDEGEI 282 ++ + E + Sbjct: 299 -NVVVNVVERSL 309 Score = 40.3 bits (93), Expect = 0.002 Identities = 9/104 (8%), Positives = 29/104 (27%), Gaps = 6/104 (5%) Query: 16 EKYFPRSFQMGFIILFYAIFGLSAVYGSNTSIVRRIEIRGATNVGKEVILSRIPVVVGQS 75 + + V +I + + GQ Sbjct: 204 PQVSENGVVTLQVAEGVVENISVRFRNKEGQDVNEQGQPIRGRTQDYIITREVELKPGQV 263 Query: 76 ISDADLDHAVKNIYAMGYFSNVKIKIVDS------VLIIDLIER 113 + + ++ ++ G F +V + + ++++++ER Sbjct: 264 FNRNTVQKDLQRVFGTGLFEDVNVSLDPGTDPTKVNVVVNVVER 307 >2x8x_X TLR1789 protein, OMP85; chaperone, TOC75, protein targeting; 1.97A {Thermosynechococcus elongatus} Length = 235 Score = 103 bits (257), Expect = 2e-22 Identities = 38/250 (15%), Positives = 94/250 (37%), Gaps = 21/250 (8%) Query: 190 EGVKAKINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYH 249 + K I + G + +VIS R ++ ++ ++ A + Sbjct: 1 DEPKVLIAEVVVEGATPELEQLVYQVISTRPG--------STTTRTQL---QQDTNAIFA 49 Query: 250 DRGYAAVKVSSQVLFDKQKSGYVLIFQIDEGEIYTVGNISIQSTLQEIQKKTLLSLIRIR 309 +A V G + F + + ++ + ++ + + + Sbjct: 50 TGFFADVNAV----PRDTPLGVRITFVVRPYPVLRAVQVAGNQ---VLTQEKVNEIFAPQ 102 Query: 310 SGNLYNPQEIKESSEKISKYFFSGERPFVRVK--TRINRDFAKRIVDIEYLIDQGSPLYV 367 G N +E++ EKI+ ++ +V +++ D + E +++Q + ++ Sbjct: 103 IGRTLNLRELQAGIEKINTFYRDNGYILGQVVGTPQVDPDGVVTLQVAEGVVEQVTYRFL 162 Query: 368 KRIEIEGNDQSYDSVIRRELELSEGDPINYSMIERAKRRIMATGYFSEVNISQLPANDVS 427 + ++ D VI RE++ G +N ++ RR+ G F +V ++ P + Sbjct: 163 NKEGEPTKQRTRDFVISREMDTQPGVVLNQKTVQADLRRLFELGLFEDVQVALEPGQN-P 221 Query: 428 DYVILRVSVK 437 V L +++K Sbjct: 222 RRVNLILNIK 231 Score = 96.1 bits (238), Expect = 3e-20 Identities = 35/238 (14%), Positives = 83/238 (34%), Gaps = 14/238 (5%) Query: 47 IVRRIEIRGATNVGKEVILSRIPVVVGQSISDADLDHAVKNIYAMGYFSNVKIKIVDS-- 104 ++ + + GAT ++++ I G + + L I+A G+F++V D+ Sbjct: 6 LIAEVVVEGATPELEQLVYQVISTRPGSTTTRTQLQQDTNAIFATGFFADVNAVPRDTPL 65 Query: 105 --VLIIDLIERKIINHLFFSGNNNLKDDQLKMIVRSRSAAAYDEDTVNADVHNIKQAYAS 162 + + ++ + +GN L +++ I + + + A + I Y Sbjct: 66 GVRITFVVRPYPVLRAVQVAGNQVLTQEKVNEIFAPQIGRTLNLRELQAGIEKINTFYRD 125 Query: 163 IGYLNVMVKVQHHSISPTTLNITYVIEEGVKAKINSIRFVGNKNYSHARLERVISIRTSG 222 GY+ V + + + + G R + VIS Sbjct: 126 NGYILGQVVGTPQVDPDGVVTLQVAEGVVEQVTYRFLNKEGEPTKQRTR-DFVISRE--- 181 Query: 223 YFSFGKTDVYSKERMSFDEEAIRAFYHDRGYAAVKVSSQVLFDKQKSGYVLIFQIDEG 280 V +++ + + +R + + V+V+ + + ++ LI I E Sbjct: 182 -MDTQPGVVLNQKTV---QADLRRLFELGLFEDVQVALEPGQNPRRV--NLILNIKER 233 Score = 74.5 bits (182), Expect = 8e-14 Identities = 33/252 (13%), Positives = 85/252 (33%), Gaps = 28/252 (11%) Query: 112 ERKIINHLFFSGNNNLKDDQLKMIVRSRSAAAYDEDTVNADVHNIKQAYASIGYLNVMVK 171 + +I + G + + ++ +R + + D + I +A+ + +V Sbjct: 3 PKVLIAEVVVEGATPELEQLVYQVISTRPGSTTTRTQLQQDTNAI---FATGFFADVNAV 59 Query: 172 VQHHSISPTTLNITYVIEEGVKAKINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDV 231 + L + + +++ GN+ + ++ + + + Sbjct: 60 PRDTP-----LGVRITFVVRPYPVLRAVQVAGNQVLTQEKVNEIFAPQ--------IGRT 106 Query: 232 YSKERMSFDEEAIRAFYHDRGYAAVKVSSQVLFDKQKSGYVLIFQIDEGEIYTVGNISIQ 291 + + E I FY D GY +V D V+ Q+ EG + V + Sbjct: 107 LNLRELQAGIEKINTFYRDNGYILGQVVGTPQVDPDG---VVTLQVAEGVVEQVTYRFLN 163 Query: 292 STLQEIQKKTLLSLIR----IRSGNLYNPQEIKESSEKISKYFFSGERPFVRVKTRINRD 347 + +++T +I + G + N + ++ ++ + F V+ + Sbjct: 164 KEGEPTKQRTRDFVISREMDTQPGVVLNQKTVQADLRRLFELGL-----FEDVQVALEPG 218 Query: 348 FAKRIVDIEYLI 359 R V++ I Sbjct: 219 QNPRRVNLILNI 230 Score = 49.9 bits (118), Expect = 2e-06 Identities = 14/94 (14%), Positives = 32/94 (34%) Query: 361 QGSPLYVKRIEIEGNDQSYDSVIRRELELSEGDPINYSMIERAKRRIMATGYFSEVNISQ 420 + + + +EG + ++ + + G + +++ I ATG+F++VN Sbjct: 1 DEPKVLIAEVVVEGATPELEQLVYQVISTRPGSTTTRTQLQQDTNAIFATGFFADVNAVP 60 Query: 421 LPANDVSDYVILRVSVKQLSAGSVGIATNYEVDK 454 + L A V +K Sbjct: 61 RDTPLGVRITFVVRPYPVLRAVQVAGNQVLTQEK 94 Score = 35.6 bits (81), Expect = 0.046 Identities = 15/104 (14%), Positives = 36/104 (34%), Gaps = 9/104 (8%) Query: 17 KYFPRSFQMGFIILFYAIFGLSAVYGSNTSIVRRIEIRGATNVGKEVILSRIPVVVGQSI 76 P+ G + L A + V + + VI + G + Sbjct: 134 VGTPQVDPDGVVTLQVAEGVVEQVTYRF---LNKEGEPTKQRTRDFVISREMDTQPGVVL 190 Query: 77 SDADLDHAVKNIYAMGYFSNVKIKIVD------SVLIIDLIERK 114 + + ++ ++ +G F +V++ + LI+++ ER Sbjct: 191 NQKTVQADLRRLFELGLFEDVQVALEPGQNPRRVNLILNIKERN 234 >3og5_A Outer membrane protein assembly complex, YAET Pro; potra fold, insertion of outer membrane proteins, protein BI; 2.69A {Escherichia coli} Length = 166 Score = 102 bits (254), Expect = 4e-22 Identities = 41/163 (25%), Positives = 75/163 (46%), Gaps = 1/163 (0%) Query: 280 GEIYTVGNISIQSTLQEIQKKTLLSLIRIRSGNLYNPQEIKESSEKISKYFFSGERPFVR 339 + Y + + + L + L +I G LYN ++ + + I K + R Sbjct: 3 MDQYKLSGVEVSGNL-AGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPR 61 Query: 340 VKTRINRDFAKRIVDIEYLIDQGSPLYVKRIEIEGNDQSYDSVIRRELELSEGDPINYSM 399 V++ + A + V + +D G+ YV++I EGND S D+V+RRE+ EG + + Sbjct: 62 VQSMPEINDADKTVKLRVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDL 121 Query: 400 IERAKRRIMATGYFSEVNISQLPANDVSDYVILRVSVKQLSAG 442 +++ K R+ G+F V+ D V + VK+ + G Sbjct: 122 VDQGKERLNRLGFFETVDTDTQRVPGSPDQVDVVYKVKERNTG 164 Score = 61.4 bits (148), Expect = 8e-10 Identities = 30/170 (17%), Positives = 63/170 (37%), Gaps = 15/170 (8%) Query: 195 KINSIRFVGNKNYSHARLERVISIRTSGYFSFGKTDVYSKERMSFDEEAIRAFYHDRGYA 254 K++ + GN A +E++ I ++Y+ +++ E+ I+ GYA Sbjct: 7 KLSGVEVSGNLAGHSAEIEQLTKIE--------PGELYNGTKVTKMEDDIKKLLGRYGYA 58 Query: 255 AVKVSSQVLFDKQKSGYVLIFQIDEGEIYTVGNISIQSTLQEIQKKTLLSLIRIRSGNLY 314 +V S + L +D G + V I + + L +R G Sbjct: 59 YPRVQSMPEINDADKTVKLRVNVDAGNRFYVRKIRFEGN-DTSKDAVLRREMRQMEGAWL 117 Query: 315 NPQEIKESSEKISKY-FFSGERPFVRVKTRINRDFAKRIVDIEYLIDQGS 363 + + E++++ FF V T+ + VD+ Y + + + Sbjct: 118 GSDLVDQGKERLNRLGFFE----TVDTDTQRVPGSPDQ-VDVVYKVKERN 162 Score = 49.8 bits (118), Expect = 2e-06 Identities = 23/128 (17%), Positives = 47/128 (36%), Gaps = 2/128 (1%) Query: 111 IERKIINHLFFSGNNNLKDDQLKMIVRSRSAAAYDEDTVNADVHNIKQAYASIGYLNVMV 170 +++ ++ + SGN +++ + + Y+ V +IK+ GY V Sbjct: 3 MDQYKLSGVEVSGNLAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRV 62 Query: 171 KVQHHSISPT-TLNITYVIEEGVKAKINSIRFVGNKNYSHARLERVISIRTSGYFSFGKT 229 + T+ + ++ G + + IRF GN A L R + + Sbjct: 63 QSMPEINDADKTVKLRVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLG-SDL 121 Query: 230 DVYSKERM 237 KER+ Sbjct: 122 VDQGKERL 129 Score = 33.3 bits (75), Expect = 0.19 Identities = 11/72 (15%), Positives = 24/72 (33%), Gaps = 7/72 (9%) Query: 49 RRIEIRGATNVGKEVILSRIPVVVGQSISDADLDHAVKNIYAMGYFSNVKIKIVDS---- 104 R+I G V+ + + G + +D + + +G+F V Sbjct: 90 RKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVDQGKERLNRLGFFETVDTDTQRVPGSP 149 Query: 105 ---VLIIDLIER 113 ++ + ER Sbjct: 150 DQVDVVYKVKER 161 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 54.2 bits (130), Expect = 1e-07 Identities = 59/375 (15%), Positives = 106/375 (28%), Gaps = 144/375 (38%) Query: 483 HAVQNYTFSVEDP---YFLGSPISAGFDLQKTHLEDGSLDINDESAAVRMIVPITESIST 539 H + V P +F+ S + F L + + + A + +T Sbjct: 13 HGSLEHVLLV--PTASFFIASQLQEQF---NKILPEPT----EGFA-------ADDEPTT 56 Query: 540 SFKYDLRFLQYGAISEKEKIPSIYTTLIE--HGKFSS--------HSI------------ 577 + +FL Y + + + ++ +F + H++ Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL 116 Query: 578 --SQSII---YNT---LDNPIV-PRKGMLISSSYD-----YAGFGGDSQYHRIGSRASYF 623 ++ +I P L + + A FGG Q G+ YF Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG--Q----GNTDDYF 170 Query: 624 YLLSD--D--SDIVGSLRFGYGCVIPSNKNLQ-LFDQFSVSSNYYLRGF---AY-KGIGP 674 L D +VG L + S + L L + + +G + + Sbjct: 171 EELRDLYQTYHVLVGDL------IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN 224 Query: 675 RVDKKYAIGGKIYSSASAAVSFP----------------MPLVP-E-RAGLRGAFFVDSA 716 DK Y S +S P + P E R+ L+GA Sbjct: 225 TPDKDYL--------LSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA------ 270 Query: 717 TLYANH-----VAL---GADKLEGNDSFWRVS-TGVEIM-WNSPLGMMGV----YYG--- 759 H A+ D E SF+ + ++ + +GV Y Sbjct: 271 ---TGHSQGLVTAVAIAETDSWE---SFFVSVRKAITVLFF------IGVRCYEAYPNTS 318 Query: 760 IP-------LRHREG 767 +P L + EG Sbjct: 319 LPPSILEDSLENNEG 333 Score = 51.9 bits (124), Expect = 6e-07 Identities = 105/625 (16%), Positives = 173/625 (27%), Gaps = 285/625 (45%) Query: 208 SHARLERVISIRTSGYFSFGKTDVYSKERMSFD---EEAIRAFYHDRGYAAVKVSSQVLF 264 SH LE V+ + T+ +F + S+ + F+ E F D Sbjct: 12 SHGSLEHVLLVPTASFF------IASQLQEQFNKILPEPTEGFAAD-------------- 51 Query: 265 DKQKS---------GYVLIFQIDEGEIYTVGNISIQSTLQEIQKKTLL-----SLIRIRS 310 D+ + GYV ++ ++ + + L E + L +L Sbjct: 52 DEPTTPAELVGKFLGYVS-SLVEPSKVGQFDQV-LNLCLTEFENCYLEGNDIHALA---- 105 Query: 311 GNLYNPQEIKESSEK--ISKYFFSGERPFVRVKTRINRDFAKRIVDIEYLID---QG-SP 364 L + K I Y + R F K+ L +G + Sbjct: 106 AKLLQENDTTLVKTKELIKNYI--------TARIMAKRPFDKKSNSA--LFRAVGEGNAQ 155 Query: 365 LYVKRIEI---EGNDQSY-DSVIRRELELSE---------GDPINYSMIER----AKRRI 407 L I +GN Y + EL + GD I E + + Sbjct: 156 LVA----IFGGQGNTDDYFE-------ELRDLYQTYHVLVGDLI-KFSAETLSELIRTTL 203 Query: 408 MATGYFSE-VNI-------SQLPAND------VS----------DYVI----LRVSVKQL 439 A F++ +NI S P D +S YV+ L + +L Sbjct: 204 DAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGEL 263 Query: 440 ------SAG-SVGI--------ATNYE-----VDKGM------GVEGHIDDNNFFGQGY- 472 + G S G+ ++E V K + GV + + Y Sbjct: 264 RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCY--------EAYP 315 Query: 473 RARLAA---------GFG------------RHAVQNY----------------------- 488 L G + VQ+Y Sbjct: 316 NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK 375 Query: 489 TFSVEDPYFLGSPIS-AGFDLQKTHLE----DGSLDINDESAAVRMIVPITE---SISTS 540 V P P S G +L L LD + R +P +E S Sbjct: 376 NLVVSGP-----PQSLYGLNL---TLRKAKAPSGLDQS------R--IPFSERKLKFSN- 418 Query: 541 FKYDLRFLQYGAISEKEKIP--SIY----TTLI-EHGKFSSHSISQS---I-IYNT---- 585 RFL ++ P S + LI + ++ S + I +Y+T Sbjct: 419 -----RFL---PVA----SPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS 466 Query: 586 ----LDNPIVPRKGMLI----------------SSSY--DYAGFGGDSQY----HRI--- 616 L I R ++ +++ D+ G GG S HR Sbjct: 467 DLRVLSGSISER---IVDCIIRLPVKWETTTQFKATHILDF-GPGGASGLGVLTHRNKDG 522 Query: 617 -GSRASYFYLLSDDSDIVGSLRFGY 640 G R +++ DI +G+ Sbjct: 523 TGVRV----IVAGTLDINPDDDYGF 543 Score = 39.2 bits (91), Expect = 0.004 Identities = 92/567 (16%), Positives = 167/567 (29%), Gaps = 249/567 (43%) Query: 12 KRLLEKYFPRSFQMGFII-------LF----------YAIFGLSAVYGSNTSIVRRIEIR 54 K L++ Y LF AIFG Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG------------------ 161 Query: 55 GATNVGKEVILSRIPVVVGQSISDADLDHAVKNIYAMGYFSNVKIKIVDSVLIIDLIERK 114 GQ +D + ++++Y Y VL+ DLI + Sbjct: 162 ------------------GQGNTDDYFEE-LRDLYQT-Y----------HVLVGDLI-KF 190 Query: 115 IINHLFFSGNNNLKDDQLKMIVRSRSAAAYDEDTVNA------DVHN-IK-------QAY 160 L + L R ++ ++ + Y Sbjct: 191 SAETL-----SEL----------IR-----TTLDAEKVFTQGLNILEWLENPSNTPDKDY 230 Query: 161 -AS-------IGYLNVMVKVQHHSISPTTLNITYVIEEGVKAKINSIRFVGNKNYSH--- 209 S IG ++++ H+ ++ L T ++ S G +S Sbjct: 231 LLSIPISCPLIG----VIQLAHYVVTAKLLGFT-------PGELRS-YLKGATGHSQGLV 278 Query: 210 --ARLERVISIRTSGYFSFGKTDVYSKERMSFDEEAIRA-FY-----HDRGYAAVKVSSQ 261 I+ S + SF + + +AI F+ + Y + Sbjct: 279 TAV----AIAETDS-WESFFVS---VR-------KAITVLFFIGVRCY-EAYPNTSLPPS 322 Query: 262 VLFDKQKSGYVLIFQIDEGE---IYTVGNISIQSTLQE-IQK--KTL-------LSLIRI 308 +L D ++ EG + ++ N++ Q +Q+ + K L +SL+ Sbjct: 323 ILEDSLENN--------EGVPSPMLSISNLT-QEQVQDYVNKTNSHLPAGKQVEISLVNG 373 Query: 309 R-----SG---NLY----NPQEIKESSEK-ISKYFFSGER-------------PF----- 337 SG +LY ++ K S S+ FS ER PF Sbjct: 374 AKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS-ERKLKFSNRFLPVASPFHSHLL 432 Query: 338 VRVKTRINRDFAKRIVDIEYLIDQGS---PLYVKRIEIEGND-QSYD-SVIRRELELSEG 392 V IN+D K ++ + P+Y +G+D + S+ R ++ Sbjct: 433 VPASDLINKDLVKN--NVS--FNAKDIQIPVYDTF---DGSDLRVLSGSISERIVDCIIR 485 Query: 393 DPINYSMIERAKRRIMATGYFSEVNISQLPANDVSDYVILRVSVKQLSAGSVGIATNYEV 452 P+ + E +Q A + D+ S G +G+ T+ Sbjct: 486 LPVKW---ETT---------------TQFKATHILDFGPGGAS------G-LGVLTHRNK 520 Query: 453 DKGMGVE----GHID---DNNFFGQGY 472 D G GV G +D D+++ G+ Sbjct: 521 D-GTGVRVIVAGTLDINPDDDY---GF 543 Score = 33.4 bits (76), Expect = 0.19 Identities = 43/209 (20%), Positives = 78/209 (37%), Gaps = 54/209 (25%) Query: 331 FSGERPFVRVKTRINRDFAKRIVDIEYLIDQGSPLYVKRIEIEGNDQSYDSVIRRELELS 390 F GE+ RI +++ I E ++D L ++I E N+ S R E L Sbjct: 1676 FGGEK-----GKRIRENYSAMI--FETIVD--GKLKTEKIFKEINEHSTSYTFRSEKGL- 1725 Query: 391 EGDPINYSMIERAKRRIMATGYFSEVNISQL-PAN------DVSDYVILRVSVKQLSAGS 443 ++ + + +M F ++ L PA+ + +Y L +S S Sbjct: 1726 ----LSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIES 1781 Query: 444 VGIATNYEVDKGMGVEGHIDDNNFFGQGY------RARLAAGFGRHAVQ----------- 486 + Y +GM ++ + + Y R+AA F + A+Q Sbjct: 1782 LVEVVFY---RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTG 1838 Query: 487 ------NYTFSVEDPYFLGSPISAGFDLQ 509 NY +VE+ + ++AG DL+ Sbjct: 1839 WLVEIVNY--NVENQQY----VAAG-DLR 1860 >3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP binding, oxidoreductase; HET: NAP; 2.30A {Escherichia coli} Length = 481 Score = 30.4 bits (69), Expect = 1.6 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 18/63 (28%) Query: 48 VRRIEIRGATNVGKEVI------LSRI--------PVVVGQSISDADLDHAVKNIYAMGY 93 VR++ G+T +G++++ + ++ P +V DADLD AV+ Sbjct: 225 VRKLSFTGSTEIGRQLMEQCAKDIKKVSLELGGNAPFIVF---DDADLDKAVEGA-LASK 280 Query: 94 FSN 96 F N Sbjct: 281 FRN 283 >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase, propargylglycine; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* Length = 404 Score = 28.0 bits (62), Expect = 8.9 Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 4/56 (7%) Query: 233 SKERMSFDEEAIRAFYHDRGYAAVKV----SSQVLFDKQKSGYVLIFQIDEGEIYT 284 + ERM+ I A + A +S +FD + G + G IYT Sbjct: 2 AHERMTPATACIHANPQKDQFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYT 57 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.320 0.138 0.390 Gapped Lambda K H 0.267 0.0482 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 6,755,352 Number of extensions: 328131 Number of successful extensions: 1036 Number of sequences better than 10.0: 1 Number of HSP's gapped: 995 Number of HSP's successfully gapped: 33 Length of query: 781 Length of database: 5,693,230 Length adjustment: 100 Effective length of query: 681 Effective length of database: 3,268,830 Effective search space: 2226073230 Effective search space used: 2226073230 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 61 (27.9 bits)