RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780772|ref|YP_003065185.1| surface antigen (D15) [Candidatus Liberibacter asiaticus str. psy62] (781 letters) >d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 85 Score = 29.4 bits (66), Expect = 0.98 Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 6/74 (8%) Query: 35 FGLSAVYGSNTSIVRRIEIRG------ATNVGKEVILSRIPVVVGQSISDADLDHAVKNI 88 G+ V SI+ + I A GK I +I + G S+ L I Sbjct: 12 LGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSII 71 Query: 89 YAMGYFSNVKIKIV 102 + S VK+ IV Sbjct: 72 KGLKNQSRVKLNIV 85 >d1nlsa_ b.29.1.1 (A:) Concanavalin A {Jack bean (Canavalia ensiformis) [TaxId: 3823]} Length = 237 Score = 26.4 bits (58), Expect = 9.6 Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 6/99 (6%) Query: 573 SSHSISQSIIYNTLDNPIVPRKGMLIS--SSYDYAGF----GGDSQYHRIGSRASYFYLL 626 +S + Y D+ V L + + G G + + I S + L Sbjct: 57 VDKRLSAVVSYPNADSATVSYDVDLDNVLPEWVRVGLSASTGLYKETNTILSWSFTSKLK 116 Query: 627 SDDSDIVGSLRFGYGCVIPSNKNLQLFDQFSVSSNYYLR 665 S+ + +L F + K+L L + ++ L Sbjct: 117 SNSTHETNALHFMFNQFSKDQKDLILQGDATTGTDGNLE 155 >d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111 Score = 26.1 bits (57), Expect = 9.6 Identities = 10/68 (14%), Positives = 26/68 (38%), Gaps = 2/68 (2%) Query: 35 FGLSAVYGSNTSIVRRIEIRGATNVGKEVILSRIPVVVGQSISDADLDHAVKNIYAMGYF 94 G + + G+ V ++ + ++ I + G + +K + + G Sbjct: 28 LGFT-LRGNTPVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGG- 85 Query: 95 SNVKIKIV 102 V++K+V Sbjct: 86 EEVEMKVV 93 >d1zbxb1 d.339.1.1 (B:485-613) Regulatory protein SIR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 129 Score = 26.3 bits (58), Expect = 9.9 Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 1/35 (2%) Query: 101 IVDSVLIIDLIERKIINHLFFSGNNNLKDDQLKMI 135 + D LI DL E K IN LKD Q MI Sbjct: 12 VADGFLI-DLAEEKPINPKDPRLLTLLKDHQRAMI 45 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.320 0.138 0.390 Gapped Lambda K H 0.267 0.0676 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 2,924,819 Number of extensions: 143143 Number of successful extensions: 392 Number of sequences better than 10.0: 1 Number of HSP's gapped: 392 Number of HSP's successfully gapped: 11 Length of query: 781 Length of database: 2,407,596 Length adjustment: 92 Effective length of query: 689 Effective length of database: 1,144,436 Effective search space: 788516404 Effective search space used: 788516404 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 57 (25.8 bits)