HHsearch alignment for GI: 254780773 and conserved domain: PRK11186
>PRK11186 carboxy-terminal protease; Provisional.
Probab=98.37 E-value=2.4e-06 Score=63.52 Aligned_cols=66 Identities=18% Similarity=0.351 Sum_probs=53.6
Q ss_pred CCCCCCCCCCHHHHHH-CCCCCEEEEE--CCCCCCC-----CHHHHHHCCCCCCCCCEEEEEECCCC--EEEECCC
Q ss_conf 2000245675565300-1456628888--7830454-----00111110146788631699965873--1310112
Q gi|254780773|r 120 PVVSNVSPASPAAIAG-VKKGDCIISL--DGITVSA-----FEEVAPYVRENPLHEISLVLYREHVG--VLHLKVM 185 (349)
Q Consensus 120 p~I~~V~~~spA~~AG-L~~GD~Il~I--nG~~V~s-----~~dl~~~i~~~~g~~v~i~v~R~~~~--~~~~~v~ 185 (349)
T Consensus 259 ~~Iv~~i~GgPA~k~g~L~~gD~Ii~V~q~~~~~~dviG~~lddvV~lIRG~kGT~V~L~I~r~~~~~~~~~v~i~ 334 (673)
T PRK11186 259 TVIKSLVAGGPAAKSKKLSVGDKIVGVGQDGKEIVDVIGWRLDDVVALIKGPKGSKVRLEILPAGKGTKTRIVTLT 334 (673)
T ss_pred EEEEEECCCCHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEEE
T ss_conf 9999706899588738999899999825789874202376599999985389988799999978888861699999