>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

Probab=99.06 E-value=2.3e-10 Score=91.25 Aligned_cols=68 Identities=32% Similarity=0.485 Sum_probs=59.5 Q ss_pred CCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCC--CHHHHHHCCCCCCCCCEEEEEECCCCEEEECCCC Q ss_conf 3200024567556530014566288887830454--0011111014678863169996587313101121 Q gi|254780773|r 119 KPVVSNVSPASPAAIAGVKKGDCIISLDGITVSA--FEEVAPYVRENPLHEISLVLYREHVGVLHLKVMP 186 (349) Q Consensus 119 ~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s--~~dl~~~i~~~~g~~v~i~v~R~~~~~~~~~v~p 186 (349) T Consensus 14 ~~~V~~v~~gsPA~~aGl~~GD~I~~Vng~~v~~~~~~~~~~~lrg~~Gt~V~l~v~R~~~~~~~~~l~R 83 (85) T cd00988 14 GLVITSVLPGSPAAKAGIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRGDGEPREVTLTR 83 (85) T ss_pred EEEEEEECCCCHHHHHCCCCCCEEEEECCEECCCCCHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEEEE T ss_conf 8999996899958980899999999999999789999999998659999889999990999899999998

HHsearch alignment for GI: 254780773 and conserved domain: cd00988