HHsearch alignment for GI: 254780773 and conserved domain: cd00989
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.45 E-value=1.1e-13 Score=114.16 Aligned_cols=75 Identities=33% Similarity=0.606 Sum_probs=66.7
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCCEEEECCCC
Q ss_conf 1001233332000245675565300145662888878304540011111014678863169996587313101121
Q gi|254780773|r 111 FFYNTGVMKPVVSNVSPASPAAIAGVKKGDCIISLDGITVSAFEEVAPYVRENPLHEISLVLYREHVGVLHLKVMP 186 (349)
Q Consensus 111 ~~~~~g~~~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~~dl~~~i~~~~g~~v~i~v~R~~~~~~~~~v~p 186 (349)
T Consensus 5 ~~~~~p~~~~vV~~V~~~spA~~AGl~~GD~I~~ing~~v~~~~~~~~~i~~~~~~~i~l~v~R~g~-~~~~~vtP 79 (79)
T cd00989 5 FVPGGPPIEPVIGEVVPGSPAAKAGLKAGDRILAINGQKIKSWEDLVDAVQENPGKPLTLTVERNGE-TITLTLTP 79 (79)
T ss_pred EEECCCCCCCEEEEECCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHHCCCCEEEEEEEECCE-EEEEEEEC
T ss_conf 9948999999999989999899859999999999999995899999999985899889999999999-98999879