HHsearch alignment for GI: 254780773 and conserved domain: cd06163
>cd06163 S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses. Also included in this group are such homologs as Bacillus subtilis YluC, Mycobacterium tuberculosis Rv2869c S2P, and Bordetella bronchiseptica HurP. Rv2869c S2P appears to have a role in the regulation of prokaryotic lipid biosynthesis and membrane composition and YluC of Bacillus has a role in transducing membrane stress. This group includes bacterial and eukaryotic S2P/M50s homologs with either one or two PDZ domains present. PDZ domains are believed to have a regulatory role. The RseP PDZ domain is required for the inhibitory reaction that prevents cleavage of its substrate, RseA.
Probab=100.00 E-value=0 Score=428.08 Aligned_cols=174 Identities=43% Similarity=0.841 Sum_probs=166.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCHHEEEEECCCEEEEEEEEEECCEEECCCCC--------CCH
Q ss_conf 999999999999997337799999849750045530683112786059807999977112111001244--------550
Q gi|254780773|r 7 FLLYTVSLIIIVVIHEFGHYMVARLCNIRVLSFSVGFGPELIGITSRSGVRWKVSLIPLGGYVSFSEDE--------KDM 78 (349)
Q Consensus 7 ~~~~~~~l~~~v~iHE~GH~~~Ar~~gv~V~~FsiGfgp~l~~~~~k~~t~y~i~~~PlGgyV~~~~~e--------~~~ 78 (349)
T Consensus 1 il~fi~~l~vlV~vHElGH~~~Ar~~Gv~V~~FsIGfGp~l~~~~-~~~T~~~i~~iPlGGyV~~~g~~~~~~~~~~~~~ 79 (182)
T cd06163 1 ILAFILVLGILIFVHELGHFLVAKLFGVKVEEFSIGFGPKLFSFK-KGETEYSISAIPLGGYVKMLGEDPEEEADPEDDP 79 (182)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEE-CCCEEEEEEEEHHHHHHHHCCCCCCCCCCCCCCH
T ss_conf 964999999999999899899999949856698863785115677-0883698540144356654267765558864232
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf 66503684210134211233321122111011100123333200024567556530014566288887830454001111
Q gi|254780773|r 79 RSFFCAAPWKKILTVLAGPLANCVMAILFFTFFFYNTGVMKPVVSNVSPASPAAIAGVKKGDCIISLDGITVSAFEEVAP 158 (349)
Q Consensus 79 ~~f~~~~~~~R~~i~~AGp~~N~ilA~iif~~~~~~~g~~~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~~dl~~ 158 (349)
T Consensus 80 ~~f~~~~~~~R~~i~~AGp~~N~ilA~~i~~~l----------------------------------------------- 112 (182)
T cd06163 80 RSFNSKPVWQRILIVFAGPLANFLLAIVLFAVL----------------------------------------------- 112 (182)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------------
T ss_conf 447439989999999858999999999999999-----------------------------------------------
Q ss_pred HCCCCCCCCCEEEEEECCCCEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 10146788631699965873131011211005654310000122034444321233345668887689888655422310
Q gi|254780773|r 159 YVRENPLHEISLVLYREHVGVLHLKVMPRLQDTVDRFGIKRQVPSVGISFSYDETKLHSRTVLQSFSRGLDEISSITRGF 238 (349)
Q Consensus 159 ~i~~~~g~~v~i~v~R~~~~~~~~~v~p~~~~~~~~~g~~~~~~~igi~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 238 (349)
T Consensus 113 -------------------------------------------------------------------------------- 112 (182)
T cd06163 113 -------------------------------------------------------------------------------- 112 (182)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred EECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCH
Q ss_conf 00000025542002246673012233345653050347899999999999996306472243699999998882786999
Q gi|254780773|r 239 LGVLSSAFGKDTRLNQISGPVGIARIAKNFFDHGFNAYIAFLAMFSWAIGFMNLLPIPILDGGHLITFLLEMIRGKSLGV 318 (349)
Q Consensus 239 ~~~l~~l~~g~~~~~~lsGPVgIa~~~~~~a~~G~~~~l~~~a~isi~Lg~~NlLPip~LDGG~i~~~~~E~i~gr~i~~ 318 (349)
T Consensus 113 --------------------------------------l~~~a~is~~L~i~NLLPip~LDGG~il~~~~E~i~gr~~~~ 154 (182)
T cd06163 113 --------------------------------------LSFLALLSINLGILNLLPIPALDGGHLLFLLIEAIRGRPLSE 154 (182)
T ss_pred --------------------------------------HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCH
T ss_conf --------------------------------------999999999999997068876772375999999995899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999888
Q gi|254780773|r 319 SVTRVITRMGLCIILFLFFLGIRNDIYG 346 (349)
Q Consensus 319 ~~~~~~~~~g~~ll~~l~i~~~~nDi~r 346 (349)
T Consensus 155 ~~~~~~~~~G~~~l~~lm~~~~~nDi~r 182 (182)
T cd06163 155 KVEEIIQTIGFALLLGLMLFVTFNDIVR 182 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999999999999999875149