HHsearch alignment for GI: 254780773 and conserved domain: smart00228
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.37 E-value=4.2e-07 Score=68.71 Aligned_cols=57 Identities=35% Similarity=0.540 Sum_probs=47.8
Q ss_pred CCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECC
Q ss_conf 32000245675565300145662888878304540--01111101467886316999658
Q gi|254780773|r 119 KPVVSNVSPASPAAIAGVKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREH 176 (349)
Q Consensus 119 ~p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~ 176 (349)
T Consensus 27 gv~I~~v~~~s~A~~~Gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~r~~ 85 (85)
T smart00228 27 GVVVSSVVPGSPAAKAGLKVGDVILEVNGTSVEGLTHLEAVDLLKKA-GGKVTLTVLRGG 85 (85)
T ss_pred CEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEECC
T ss_conf 89999987999478768989999999999998999899999998779-997999999496