HHsearch results for GI: 254780773 and protein with PDBid: 1i16_A

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=98.21  E-value=5.5e-07  Score=66.43  Aligned_cols=60  Identities=17%  Similarity=0.276  Sum_probs=52.2

Q ss_pred             CCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCC--CCHHHHHHCCCCCCCCCEEEEEECCCC
Q ss_conf             32000245675565300-1456628888783045--400111110146788631699965873
Q gi|254780773|r  119 KPVVSNVSPASPAAIAG-VKKGDCIISLDGITVS--AFEEVAPYVRENPLHEISLVLYREHVG  178 (349)
Q Consensus       119 ~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~--s~~dl~~~i~~~~g~~v~i~v~R~~~~  178 (349)
                      ..+|..|.|+|||+++| |++||+|++|||+++.  +.+|+.+.++..+...+.+++.|....
T Consensus        58 ~i~V~~V~~gg~A~~~G~l~~GD~Il~INg~~v~~~t~~e~v~~lr~~~~~~v~L~v~r~~~~  120 (130)
T 1i16_A           58 PLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSLQ  120 (130)
T ss_dssp             CCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCSSEEEEEEEEESSC
T ss_pred             CEEEEEECCCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCEEEEEEECCCCC
T ss_conf             879999899981798289987899999999998899799999999718997599999748988