HHsearch results for GI: 254780773 and protein with PDBid: 1lcy_A

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, IAP-binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=99.11  E-value=7.3e-11  Score=93.15  Aligned_cols=66  Identities=27%  Similarity=0.413  Sum_probs=58.7

Q ss_pred             CCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCCEEEECCCCCCC
Q ss_conf             000245675565300145662888878304540011111014678863169996587313101121100
Q gi|254780773|r  121 VVSNVSPASPAAIAGVKKGDCIISLDGITVSAFEEVAPYVRENPLHEISLVLYREHVGVLHLKVMPRLQ  189 (349)
Q Consensus       121 ~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~~dl~~~i~~~~g~~v~i~v~R~~~~~~~~~v~p~~~  189 (349)
                      .|.+|.++|||++|||++||+|+++||++|.+..|+.+.+  ++++++++++.|+++ ..+++++++..
T Consensus       259 ~V~~V~~~spA~~AGL~~GDiI~~inG~~I~~~~~l~~~~--~~g~~v~l~V~R~g~-~~~l~Vtl~~~  324 (325)
T 1lcy_A          259 LIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAEDVYEAV--RTQSQLAVQIRRGRE-TLTLYVTPEVT  324 (325)
T ss_dssp             EEEEECTTSHHHHHTCCTTCEEEEETTEECCSHHHHHHHH--TTCSSEEEEEEETTE-EEEEEECCEEC
T ss_pred             EEEEECCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHH--CCCCEEEEEEEECCE-EEEEEEEECCC
T ss_conf             9999379996898699989999998999938999999975--589879999999999-99999972155