HHsearch results for GI: 254780773 and protein with PDBid: 1p1d_A
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=98.56 E-value=3.9e-08 Score=74.33 Aligned_cols=86 Identities=21% Similarity=0.338 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCCCHHHHHH-CCCCCEEEEECCCCCCCC--HHHHHHCCCC-
Q ss_conf 013421123332112211101110-01233332000245675565300-145662888878304540--0111110146-
Q gi|254780773|r 89 KILTVLAGPLANCVMAILFFTFFF-YNTGVMKPVVSNVSPASPAAIAG-VKKGDCIISLDGITVSAF--EEVAPYVREN- 163 (349)
Q Consensus 89 R~~i~~AGp~~N~ilA~iif~~~~-~~~g~~~p~I~~V~~~spA~~AG-L~~GD~Il~InG~~V~s~--~dl~~~i~~~- 163 (349)
+-.++.++|..+|-+.+.- ..+ .......++|++|.|+|||++|| |++||+|++|||+++.++ ++..+.++..
T Consensus 8 ~~v~l~~~~~~glG~~i~g--g~~~~~~~~~~~~V~~V~p~spA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~ 85 (196)
T 1p1d_A 8 TEVVLTADPVTGFGIQLQG--SVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSS 85 (196)
T ss_dssp EEEEEECBTTTBCCCEEEE--CSSCSSSCSCSEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTSCHHHHHHHHHTCC
T ss_pred EEEEEECCCCCCCCEEEEE--CCCCCCCCCCCCEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHCC
T ss_conf 9999966999963889971--35677768889799998999978970899789999998998869988999999997459
Q ss_pred CCCCCEEEEEECC
Q ss_conf 7886316999658
Q gi|254780773|r 164 PLHEISLVLYREH 176 (349)
Q Consensus 164 ~g~~v~i~v~R~~ 176 (349)
....+.+++.++.
T Consensus 86 ~~~~v~l~~~~~~ 98 (196)
T 1p1d_A 86 ITSKVTLEIEFDV 98 (196)
T ss_dssp SSSEEEEEEEECS
T ss_pred CCEEEEEEEECCC
T ss_conf 8549998751010