HHsearch results for GI: 254780773 and protein with PDBid: 1q3o_A

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A
Probab=98.39  E-value=1.6e-07  Score=70.07  Aligned_cols=57  Identities=19%  Similarity=0.287  Sum_probs=48.9

Q ss_pred             CCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf             2000245675565300145662888878304540--011111014678863169996587
Q gi|254780773|r  120 PVVSNVSPASPAAIAGVKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHV  177 (349)
Q Consensus       120 p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~  177 (349)
                      ..|..|.++|||++|||++||+|++|||+++.++  +++.+.+++. ++++++++.|...
T Consensus        47 ~~V~~v~~g~~A~~aGL~~GD~Il~vng~~v~~~~~~~v~~~i~~~-~~~v~l~V~~~~~  105 (109)
T 1q3o_A           47 QYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQG-GNTLMVKVVMVTR  105 (109)
T ss_dssp             EEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHT-TTEEEEEEEEEEC
T ss_pred             EEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEECCC
T ss_conf             8999979999899849987999999999998999899999999829-9969999998998