HHsearch results for GI: 254780773 and protein with PDBid: 1q3o_A
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A
Probab=98.39 E-value=1.6e-07 Score=70.07 Aligned_cols=57 Identities=19% Similarity=0.287 Sum_probs=48.9
Q ss_pred CCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf 2000245675565300145662888878304540--011111014678863169996587
Q gi|254780773|r 120 PVVSNVSPASPAAIAGVKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYREHV 177 (349)
Q Consensus 120 p~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R~~~ 177 (349)
..|..|.++|||++|||++||+|++|||+++.++ +++.+.+++. ++++++++.|...
T Consensus 47 ~~V~~v~~g~~A~~aGL~~GD~Il~vng~~v~~~~~~~v~~~i~~~-~~~v~l~V~~~~~ 105 (109)
T 1q3o_A 47 QYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQG-GNTLMVKVVMVTR 105 (109)
T ss_dssp EEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHT-TTEEEEEEEEEEC
T ss_pred EEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEECCC
T ss_conf 8999979999899849987999999999998999899999999829-9969999998998