HHsearch results for GI: 254780773 and protein with PDBid: 1r6j_A

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A

Probab=98.18  E-value=8.5e-07  Score=65.10  Aligned_cols=53  Identities=15%  Similarity=0.267  Sum_probs=44.7

Q ss_pred             CCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCCCCEEEEEE
Q ss_conf             000245675565300145662888878304540--011111014678863169996
Q gi|254780773|r  121 VVSNVSPASPAAIAGVKKGDCIISLDGITVSAF--EEVAPYVRENPLHEISLVLYR  174 (349)
Q Consensus       121 ~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~--~dl~~~i~~~~g~~v~i~v~R  174 (349)
                      .|.+|.++|||+++||++||+|++|||+++.++  +++.+.+++. ++++++++..
T Consensus        26 ~I~~V~~gs~A~~~Gl~~GD~Il~VNg~~v~~~t~~~~~~ll~~~-~~~v~L~V~p   80 (82)
T 1r6j_A           26 KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTS-GTVVTITIMP   80 (82)
T ss_dssp             EEEEECTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHHS-CSEEEEEEEE
T ss_pred             EEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEC
T ss_conf             998988999899839998999999999997899899999999729-9979999974