HHsearch results for GI: 254780773 and protein with PDBid: 2i4s_A

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5

Probab=98.88  E-value=1.4e-09  Score=84.32  Aligned_cols=63  Identities=19%  Similarity=0.285  Sum_probs=56.3

Q ss_pred             CCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCC-CCCCCCEEEEEECCCCEEEECC
Q ss_conf             000245675565300145662888878304540011111014-6788631699965873131011
Q gi|254780773|r  121 VVSNVSPASPAAIAGVKKGDCIISLDGITVSAFEEVAPYVRE-NPLHEISLVLYREHVGVLHLKV  184 (349)
Q Consensus       121 ~I~~V~~~spA~~AGL~~GD~Il~InG~~V~s~~dl~~~i~~-~~g~~v~i~v~R~~~~~~~~~v  184 (349)
                      .|..+.|+|||++|||++||+|++|||+++.+++|+...++. ++++++++++.|+|+ ..++++
T Consensus        40 ~V~~v~~~s~a~~aGl~~GDvI~~ing~~v~~~~~~~~~i~~~~~g~~v~l~v~R~g~-~~~i~v  103 (105)
T 2i4s_A           40 RVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVERDGQ-QHDVYI  103 (105)
T ss_dssp             EEEECSCTHHHHHHTCCTTCEEEEETTEETTSTTHHHHHHHHHTTCSEEEEEEEETTE-EEEEEE
T ss_pred             EEECCCCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHHCCCCCEEEEEEEECCE-EEEEEE
T ss_conf             9942899798998799989999998999948999999999837998989999999999-999999