BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780773|ref|YP_003065186.1| zinc metallopeptidase [Candidatus Liberibacter asiaticus str. psy62] (349 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780773|ref|YP_003065186.1| zinc metallopeptidase [Candidatus Liberibacter asiaticus str. psy62] Length = 349 Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/349 (100%), Positives = 349/349 (100%) Query: 1 MFWLDCFLLYTVSLIIIVVIHEFGHYMVARLCNIRVLSFSVGFGPELIGITSRSGVRWKV 60 MFWLDCFLLYTVSLIIIVVIHEFGHYMVARLCNIRVLSFSVGFGPELIGITSRSGVRWKV Sbjct: 1 MFWLDCFLLYTVSLIIIVVIHEFGHYMVARLCNIRVLSFSVGFGPELIGITSRSGVRWKV 60 Query: 61 SLIPLGGYVSFSEDEKDMRSFFCAAPWKKILTVLAGPLANCVMAILFFTFFFYNTGVMKP 120 SLIPLGGYVSFSEDEKDMRSFFCAAPWKKILTVLAGPLANCVMAILFFTFFFYNTGVMKP Sbjct: 61 SLIPLGGYVSFSEDEKDMRSFFCAAPWKKILTVLAGPLANCVMAILFFTFFFYNTGVMKP 120 Query: 121 VVSNVSPASPAAIAGVKKGDCIISLDGITVSAFEEVAPYVRENPLHEISLVLYREHVGVL 180 VVSNVSPASPAAIAGVKKGDCIISLDGITVSAFEEVAPYVRENPLHEISLVLYREHVGVL Sbjct: 121 VVSNVSPASPAAIAGVKKGDCIISLDGITVSAFEEVAPYVRENPLHEISLVLYREHVGVL 180 Query: 181 HLKVMPRLQDTVDRFGIKRQVPSVGISFSYDETKLHSRTVLQSFSRGLDEISSITRGFLG 240 HLKVMPRLQDTVDRFGIKRQVPSVGISFSYDETKLHSRTVLQSFSRGLDEISSITRGFLG Sbjct: 181 HLKVMPRLQDTVDRFGIKRQVPSVGISFSYDETKLHSRTVLQSFSRGLDEISSITRGFLG 240 Query: 241 VLSSAFGKDTRLNQISGPVGIARIAKNFFDHGFNAYIAFLAMFSWAIGFMNLLPIPILDG 300 VLSSAFGKDTRLNQISGPVGIARIAKNFFDHGFNAYIAFLAMFSWAIGFMNLLPIPILDG Sbjct: 241 VLSSAFGKDTRLNQISGPVGIARIAKNFFDHGFNAYIAFLAMFSWAIGFMNLLPIPILDG 300 Query: 301 GHLITFLLEMIRGKSLGVSVTRVITRMGLCIILFLFFLGIRNDIYGLMQ 349 GHLITFLLEMIRGKSLGVSVTRVITRMGLCIILFLFFLGIRNDIYGLMQ Sbjct: 301 GHLITFLLEMIRGKSLGVSVTRVITRMGLCIILFLFFLGIRNDIYGLMQ 349 >gi|254780700|ref|YP_003065113.1| serine protease DO-like protease [Candidatus Liberibacter asiaticus str. psy62] Length = 489 Score = 30.4 bits (67), Expect = 0.051, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Query: 116 GVMKPVVSNVSPASPAAIAGVKKGDCIISLDGITVSAFEE-VAPYVRENPLHEISLVLYR 174 G +++ V SPA AG+K GD I LDG + + ++ V +P ++ + L + Sbjct: 304 GTKGSLITAVVKESPADKAGMKVGDVICMLDGRIIKSHQDFVWQIASRSPKEQVKISLCK 363 Query: 175 E 175 E Sbjct: 364 E 364 >gi|254781091|ref|YP_003065504.1| putative pyridoxal-phosphate-dependent aminotransferase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 383 Score = 27.7 bits (60), Expect = 0.33, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 28/170 (16%) Query: 138 KGDCIISLDGITVSAFEEVAPYVREN-PLHEISLVLYREHVGVLHLKVMPRLQDTVDRFG 196 +G IS+D + +SA E A Y + P H+I + G++ ++ L D +++ Sbjct: 85 QGSHKISIDSLYISAIEHPAVYAGGHFPSHKIHKIPVLSK-GIVDIQA---LTDFLEQRN 140 Query: 197 IKRQVPSVGISFSYDETKLHSRTVLQSFSRGLDEISSITRGFLGVL-SSAFGKDTRLNQI 255 +P + + F +ET V+Q + EI+ I + + G+L A R+ Sbjct: 141 STCGIPMIAVMFVNNET-----GVIQP----IKEIAQIVKEYQGILVVDAVQAAGRI--- 188 Query: 256 SGPVGIARIAKNFF---DHGFNAYIAFLAM-FSWAIGFMNLLPIPILDGG 301 P+ I I +F H A + A+ F I LLP P+L GG Sbjct: 189 --PLSIEEIKADFLIISSHKLGAPVGAGALVFREDI----LLPSPLLRGG 232 >gi|254780617|ref|YP_003065030.1| F0F1 ATP synthase subunit alpha [Candidatus Liberibacter asiaticus str. psy62] Length = 509 Score = 25.8 bits (55), Expect = 1.2, Method: Compositional matrix adjust. Identities = 16/77 (20%), Positives = 37/77 (48%), Gaps = 3/77 (3%) Query: 216 HSRTVLQSFSRGLDEISSITRGFLGVLSSAFGKDTRLNQISGPVGIARIAKNFFDHGFNA 275 R+ + F + L++ +++ + V S++ D Q+ P + + F D+G++A Sbjct: 208 QKRSSVARFVKALEDRGALSYSIVVVASAS---DPAPMQLLAPFAGCAMGEYFRDNGYHA 264 Query: 276 YIAFLAMFSWAIGFMNL 292 IA+ + A+ + L Sbjct: 265 LIAYDDLQKHAVAYRQL 281 >gi|254780716|ref|YP_003065129.1| 6-phosphogluconate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 475 Score = 24.3 bits (51), Expect = 3.0, Method: Compositional matrix adjust. Identities = 48/197 (24%), Positives = 77/197 (39%), Gaps = 32/197 (16%) Query: 71 FSEDEKDMRSFFCAAPW--KKILTVLAGPLANCVMA--ILFFTFFFYNTGVMKPVVSNVS 126 + ++ K M+SFF + K L N + A IL FT F+ G S Sbjct: 294 YRDESKKMQSFFNPSSHFPLKCFDSFVKDLENALYASTILSFTQGFWVIGKSSEKYS--W 351 Query: 127 PASPAAIAGVKKGDCIISLDGITVSAFEEVAPYVRENP--LHEISLVLYREHVGVLHLKV 184 S A IA + + CII ++ + E+P + +++ E V K Sbjct: 352 SLSLATIARIWRAGCII-----RSQILNDIVKSLTEDPSSTNLLNIPSISEKVK----KT 402 Query: 185 MPRLQD---TVDRFGIKRQVPSVGISFSYDETKLHSRTVLQSFSRGLDEISSITRGFLGV 241 +P L+ T G VPS+ + SY +T +H RG + R F G Sbjct: 403 IPSLRRIVVTCTENGYP--VPSLSAALSYFDTFIH--------DRGTANLIQAQRDFFG- 451 Query: 242 LSSAFGKDTRLNQISGP 258 S F + ++++ GP Sbjct: 452 -SHGFDRKDKISEPHGP 467 >gi|254780655|ref|YP_003065068.1| transketolase [Candidatus Liberibacter asiaticus str. psy62] Length = 673 Score = 23.5 bits (49), Expect = 6.1, Method: Compositional matrix adjust. Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Query: 102 VMAILFFTFFFYNTGVMKPVVSNVSPASPAAIAGVKKG-DCIISLDG 147 V+++ F FF + + + SP A AG+++G D I DG Sbjct: 589 VVSVPCFELFFEQSDSYRAQIIGSSPIKIAIEAGLRQGWDAFIGSDG 635 >gi|254780615|ref|YP_003065028.1| F0F1 ATP synthase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 478 Score = 22.7 bits (47), Expect = 9.0, Method: Compositional matrix adjust. Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%) Query: 145 LDGITV--SAFEEVAPYVRENPLHEISLVLYREHVGVLHLKVMPRLQDTVDRF 195 LD TV E Y +PL S +L + VG H V R+Q+ + R+ Sbjct: 334 LDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRY 386 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.330 0.145 0.443 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 227,582 Number of Sequences: 1233 Number of extensions: 9830 Number of successful extensions: 36 Number of sequences better than 100.0: 11 Number of HSP's better than 100.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 31 Number of HSP's gapped (non-prelim): 13 length of query: 349 length of database: 328,796 effective HSP length: 75 effective length of query: 274 effective length of database: 236,321 effective search space: 64751954 effective search space used: 64751954 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 39 (19.6 bits)