Query gi|254780774|ref|YP_003065187.1| phosphatidate cytidylyltransferase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 269
No_of_seqs 184 out of 2275
Neff 8.3
Searched_HMMs 33803
Date Wed Jun 1 14:19:50 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780774.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1u7g_A Probable ammonium tran 81.2 3.8 0.00011 20.6 6.4 66 162-237 255-320 (385)
2 >2gcu_A Putative hydroxyacylgl 67.8 1.8 5.2E-05 22.7 0.7 36 208-243 58-93 (122)
3 >3b9w_A Ammonium transporter f 62.7 11 0.00031 17.8 9.7 116 102-228 48-164 (165)
4 >1mqo_A Beta-lactamase II; alp 42.6 6 0.00018 19.4 0.0 33 211-243 59-91 (100)
5 >2yz3_A Metallo-beta-lactamase 41.8 5.7 0.00017 19.5 -0.2 34 210-243 57-90 (108)
6 >1bh9_B TAFII28; histone fold, 41.4 16 0.00048 16.7 2.0 42 194-235 16-57 (72)
7 >1m2x_A Class B carbapenemase 40.2 6.3 0.00018 19.3 -0.2 36 208-243 55-90 (109)
8 >1ko3_A VIM-2 metallo-beta-lac 37.8 6.4 0.00019 19.2 -0.5 33 209-241 56-88 (103)
9 >1x8h_A Beta-lactamase; hydrol 36.4 14 0.00042 17.0 1.1 35 209-243 50-84 (100)
10 >1e5d_A Rubredoxin\:oxygen oxi 32.5 15 0.00044 16.9 0.7 44 203-246 68-115 (125)
11 >2zwr_A Metallo-beta-lactamase 32.3 15 0.00043 17.0 0.6 31 210-241 51-81 (98)
12 >1k8w_A TRNA pseudouridine syn 30.2 18 0.00054 16.3 0.9 24 215-243 41-64 (108)
13 >3fvy_A Dipeptidyl-peptidase 3 29.6 14 0.0004 17.2 0.1 34 131-167 39-72 (148)
14 >1dl2_A Class I alpha-1,2-mann 28.6 37 0.0011 14.4 2.6 46 213-258 73-127 (131)
15 >1r3e_A TRNA pseudouridine syn 28.5 21 0.00061 16.0 0.9 24 215-243 19-42 (92)
16 >1a7t_A Metallo-beta-lactamase 27.6 12 0.00036 17.5 -0.4 33 211-243 58-90 (108)
17 >2q0i_A Quinolone signal respo 27.4 16 0.00048 16.7 0.2 31 215-245 71-101 (171)
18 >2p97_A Hypothetical protein; 26.5 18 0.00053 16.4 0.3 29 212-241 58-86 (100)
19 >2b2h_A AMT-1, ammonium transp 26.5 41 0.0012 14.2 6.9 40 194-237 268-307 (369)
20 >1jjt_A IMP-1 metallo beta-lac 23.6 17 0.00051 16.5 -0.3 34 211-244 54-87 (109)
21 >1sgv_A TRNA pseudouridine syn 21.2 34 0.001 14.7 0.9 24 215-243 22-45 (87)
No 1
>>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia channnel, membrane protein, RH protein; HET: MSE BOG; 1.40A {Escherichia coli} (A:)
Probab=81.18 E-value=3.8 Score=20.60 Aligned_cols=66 Identities=18% Similarity=0.097 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 0285402447889989999988642101466564301357667889998877999999874799854487998771
Q gi|254780774|r 162 KISPRKTWSGSIGGLFCGVGVGVALLSFFCANCFELALAVSILLSVSCQLGDLFESYIKRYFGIKQSGWLLPGHGG 237 (269)
Q Consensus 162 ~ISP~KT~EG~igG~i~s~i~~~~~~~~~~~~~~~~~i~l~~~~~i~~~~GDL~eS~iKR~~~vKDsg~llpGHGG 237 (269)
|+||-.+.+|.++|++...-. -...+++..+++|++.++.+.. ....+||+.++.|..+..|=||.
T Consensus 255 k~~~~~~~~G~laGlVait~~-------~~~v~p~~A~iiG~iag~i~~~---~~~~~~~~~~idD~~~v~~vHg~ 320 (385)
T 1u7g_A 255 LPSLLGACSGAIAGLVGVTPA-------CGYIGVGGALIIGVVAGLAGLW---GVTXLKRLLRVDDPCDVFGVHGV 320 (385)
T ss_dssp SCCHHHHHHHHHHHHHHHTTT-------TTTSCHHHHHHHHHHHHHHHHH---HHHHHHHHHCSCCGGGHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCC-------CCCCCCCHHHHHHHHCCHHHHH---HHHHHHHHHCCCCCCCEEEECCH
T ss_conf 877999987754101001456-------4534631156622202257889---99999877012553455755112
No 2
>>2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana} (A:99-220)
Probab=67.76 E-value=1.8 Score=22.72 Aligned_cols=36 Identities=19% Similarity=0.240 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 998877999999874799854487998771676264
Q gi|254780774|r 208 SCQLGDLFESYIKRYFGIKQSGWLLPGHGGVMDRVD 243 (269)
Q Consensus 208 ~~~~GDL~eS~iKR~~~vKDsg~llpGHGGilDR~D 243 (269)
.....|..+|..||....+|.-.++||||...+=-+
T Consensus 58 ~~~~~~~~~s~~~~l~~l~~~~~v~pgHg~~~~~~~ 93 (122)
T 2gcu_A 58 EGSSDQLYESVHSQIFTLPKDTLIYPAHDYKGFEVS 93 (122)
T ss_dssp TCCHHHHHHHHHHHTTTSCTTCEEEESBCSSSCCCE
T ss_pred CCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHH
T ss_conf 367999878875255346666299667667620233
No 3
>>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transport protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A* (A:1-38,A:168-294)
Probab=62.69 E-value=11 Score=17.85 Aligned_cols=116 Identities=11% Similarity=0.011 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 58999999999999999999960666696999999999999610676300102345300002854024478899899999
Q gi|254780774|r 102 AFWRALGVVYSGLPSIALSSLRGDDAKGCVIVFFVLSVVWATDIFAYFIGRFVGGPKIAPKISPRKTWSGSIGGLFCGVG 181 (269)
Q Consensus 102 ~~~~~~~~~yi~~~~~~l~~l~~~~~~g~~~il~ll~~v~~~D~~AY~~G~~~Gk~kl~p~ISP~KT~EG~igG~i~s~i 181 (269)
.....+|.+.+.+.+.....=-..+........-..+....+-..+++....+.|+| .||.-+..|.++|++...-
T Consensus 48 ~~l~~LGt~lLW~GW~GFN~Gs~~~~~~~~~~~NT~laaaag~l~~~~~~~~l~~~k----~s~~~~~nG~LaGLVaITa 123 (165)
T 3b9w_A 48 DRFSMLGSMVLWLFWPSFATAIVPFEQMPQTIVNTLLALCGATLATYFLSALFHKGK----ASIVDMANAALAGGVAIGS 123 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC----CCHHHHHHHTTHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHHHHCC
T ss_conf 388899999999987541022022079999998778899999999999999851787----5168889898751233147
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCCC
Q ss_conf 8864210146656430135766788999887-7999999874799854
Q gi|254780774|r 182 VGVALLSFFCANCFELALAVSILLSVSCQLG-DLFESYIKRYFGIKQS 228 (269)
Q Consensus 182 ~~~~~~~~~~~~~~~~~i~l~~~~~i~~~~G-DL~eS~iKR~~~vKDs 228 (269)
. . ....++..+++|++.++.+..+ ...++.+|++.++-|-
T Consensus 124 ~----~---~~v~p~~AliIG~iag~i~~~~~~~l~~~L~~~lkIDDv 164 (165)
T 3b9w_A 124 V----C---NIVGPVGAFVIGLLGGAISVVGFVFIQPMLESKAKTIDT 164 (165)
T ss_dssp T----T---TTSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHSCCCCT
T ss_pred C----C---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 7----6---602506788998755678888999999999973789887
No 4
>>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} (A:128-227)
Probab=42.63 E-value=6 Score=19.37 Aligned_cols=33 Identities=21% Similarity=0.223 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 877999999874799854487998771676264
Q gi|254780774|r 211 LGDLFESYIKRYFGIKQSGWLLPGHGGVMDRVD 243 (269)
Q Consensus 211 ~GDL~eS~iKR~~~vKDsg~llpGHGGilDR~D 243 (269)
.-|..+|.=|...-.-|--.++||||...|+-+
T Consensus 59 ~~~~~~sl~~~~~~~~~~~~i~pgHG~~~~~~~ 91 (100)
T 1mqo_A 59 VNEWSTSIENVLKRYRNINAVVPGHGEVGDKGL 91 (100)
T ss_dssp HHHHHHHHHHHHHHCCSCSEEEESSSCCBCTHH
T ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHH
T ss_conf 999999999998447999999959896589899
No 5
>>2yz3_A Metallo-beta-lactamase; enzyme-inhibitor complex, hydrolase; HET: M5P; 2.30A {Pseudomonas putida} (A:159-266)
Probab=41.76 E-value=5.7 Score=19.52 Aligned_cols=34 Identities=18% Similarity=0.136 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 8877999999874799854487998771676264
Q gi|254780774|r 210 QLGDLFESYIKRYFGIKQSGWLLPGHGGVMDRVD 243 (269)
Q Consensus 210 ~~GDL~eS~iKR~~~vKDsg~llpGHGGilDR~D 243 (269)
..=|+.+|.=|...-..|.--++||||...++-+
T Consensus 57 ~~~~~~~sl~~l~~~~~~~~~v~pgHG~~~~~~~ 90 (108)
T 2yz3_A 57 DLAEWPTSIERIQQHYPEAQFVIPGHGLPGGLDL 90 (108)
T ss_dssp CTTTHHHHHHHHHHHCTTCSEEEESSSCCBCTHH
T ss_pred CHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHH
T ss_conf 9999999999998128998499879898789899
No 6
>>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} (B:18-89)
Probab=41.40 E-value=16 Score=16.70 Aligned_cols=42 Identities=12% Similarity=0.093 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 643013576678899988779999998747998544879987
Q gi|254780774|r 194 CFELALAVSILLSVSCQLGDLFESYIKRYFGIKQSGWLLPGH 235 (269)
Q Consensus 194 ~~~~~i~l~~~~~i~~~~GDL~eS~iKR~~~vKDsg~llpGH 235 (269)
+....+.+.+-.--=-++||++|.+..=.-.=+|+|.+.|-|
T Consensus 16 sv~~nv~i~v~GiaKvFvGEiVE~A~~V~~~~~e~gPl~P~H 57 (72)
T 1bh9_B 16 SVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKH 57 (72)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf 879139999999999999999999999999653789999389
No 7
>>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} (A:115-223)
Probab=40.15 E-value=6.3 Score=19.26 Aligned_cols=36 Identities=14% Similarity=0.171 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 998877999999874799854487998771676264
Q gi|254780774|r 208 SCQLGDLFESYIKRYFGIKQSGWLLPGHGGVMDRVD 243 (269)
Q Consensus 208 ~~~~GDL~eS~iKR~~~vKDsg~llpGHGGilDR~D 243 (269)
.+-.-|+.+|.-|...-..|.-.+.||||...+.-+
T Consensus 55 ~~~~~~~~~sl~~l~~~~~~~~~i~pgHg~~~~~~~ 90 (109)
T 1m2x_A 55 EAYVNDWTQSVHNIQQKFSGAQYVVAGHDDWKDQRS 90 (109)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCSEEEESBSCCCSTTH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHH
T ss_conf 989999999999997117999699889898679899
No 8
>>1ko3_A VIM-2 metallo-beta-lactamase; alpha-beta/BETA-alpha fold, hydrolase; 1.91A {Pseudomonas aeruginosa} (A:128-230)
Probab=37.78 E-value=6.4 Score=19.21 Aligned_cols=33 Identities=18% Similarity=0.215 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf 988779999998747998544879987716762
Q gi|254780774|r 209 CQLGDLFESYIKRYFGIKQSGWLLPGHGGVMDR 241 (269)
Q Consensus 209 ~~~GDL~eS~iKR~~~vKDsg~llpGHGGilDR 241 (269)
+..-+..+|.=|...-..|.-.++||||...+.
T Consensus 56 ~~~~~~~~sl~~l~~~~~~~~~i~pgHg~~~~~ 88 (103)
T 1ko3_A 56 ADLAEWPTSIERIQQHYPEAQFVIPGHGLPGGL 88 (103)
T ss_dssp CCTTTHHHHHHHHHHHCTTCCEEEESSSCCBCT
T ss_pred CCHHHHHHHHHHHHCCCCCCCEEECCCCCCCCH
T ss_conf 999999999999971289984998699988998
No 9
>>1x8h_A Beta-lactamase; hydrolase; 1.60A {Aeromonas hydrophila} (A:129-228)
Probab=36.44 E-value=14 Score=17.03 Aligned_cols=35 Identities=6% Similarity=-0.019 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 98877999999874799854487998771676264
Q gi|254780774|r 209 CQLGDLFESYIKRYFGIKQSGWLLPGHGGVMDRVD 243 (269)
Q Consensus 209 ~~~GDL~eS~iKR~~~vKDsg~llpGHGGilDR~D 243 (269)
+-..+..+|.=|-..-..|.-.++||||...+.-+
T Consensus 50 ~~~~~~~~sl~~l~~~~~d~~~v~pgHg~~~~~~~ 84 (100)
T 1x8h_A 50 ADVKAYPQTLERLKAMKLPIKTVIGGHDSPLHGPE 84 (100)
T ss_dssp CCTTHHHHHHHHHHHTCCCCSEEECSSSCCEECTH
T ss_pred CCHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCHH
T ss_conf 89999999999997247999899969898779989
No 10
>>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} (A:126-250)
Probab=32.53 E-value=15 Score=16.94 Aligned_cols=44 Identities=14% Similarity=0.185 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCHHH---HHHHHH
Q ss_conf 678899988779999998747998-54487998771676---264799
Q gi|254780774|r 203 ILLSVSCQLGDLFESYIKRYFGIK-QSGWLLPGHGGVMD---RVDGLV 246 (269)
Q Consensus 203 ~~~~i~~~~GDL~eS~iKR~~~vK-Dsg~llpGHGGilD---R~Ds~l 246 (269)
...+......+.+.+.++|-.... |--.+.||||...+ |++.++
T Consensus 68 ~~~~~~~~~~~~~~~~l~~l~~L~~d~~~i~PgHG~~~~~~~~~~~~~ 115 (125)
T 1e5d_A 68 YYANIVNPYAPQTLKAIETLVGAGVAPEFICPDHGVIFRGADQCTFAV 115 (125)
T ss_dssp HHHHHTGGGHHHHHHHHHHHHHTTCCCSEEEESSSCBEESHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCEEECCCCCHHCCHHHHHHHH
T ss_conf 654031025999999999998668986299806762106768899999
No 11
>>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} (A:110-207)
Probab=32.29 E-value=15 Score=16.95 Aligned_cols=31 Identities=29% Similarity=0.453 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf 88779999998747998544879987716762
Q gi|254780774|r 210 QLGDLFESYIKRYFGIKQSGWLLPGHGGVMDR 241 (269)
Q Consensus 210 ~~GDL~eS~iKR~~~vKDsg~llpGHGGilDR 241 (269)
-..+..+| ++|-.+.++--.++||||+..+-
T Consensus 51 ~~~~~~~S-l~~l~~l~~~~~i~pgHg~~~~~ 81 (98)
T 2zwr_A 51 DPKALFAS-LKRLLSLPPETRVHPGHGPGTTL 81 (98)
T ss_dssp CHHHHHHH-HHHHTTSCTTCEEEESBSCCEEH
T ss_pred CHHHHHHH-HHHHHCCCCCEEEECCCCCCCCH
T ss_conf 99999999-99997689986999998986438
No 12
>>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} (A:1-79,A:225-253)
Probab=30.22 E-value=18 Score=16.33 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=19.2
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 99999874799854487998771676264
Q gi|254780774|r 215 FESYIKRYFGIKQSGWLLPGHGGVMDRVD 243 (269)
Q Consensus 215 ~eS~iKR~~~vKDsg~llpGHGGilDR~D 243 (269)
+-+.+||..++|-- ||+|-||-+-
T Consensus 41 vV~~vkk~l~~kKV-----GH~GTLDP~A 64 (108)
T 1k8w_A 41 ALQKVKRIYNANRA-----GHTGALDPLA 64 (108)
T ss_dssp HHHHHHHHTTCSCE-----EESSCCCTTC
T ss_pred HHHHHHHHHCCCCC-----CCCCCCCCCC
T ss_conf 99999998589968-----7686579746
No 13
>>3fvy_A Dipeptidyl-peptidase 3; SGC, DPP3, alternative splicing, aminopeptidase, cytoplasm, hydrolase, metal-binding, metalloprotease, phosphoprotein; 1.90A {Homo sapiens} (A:53-164,A:693-728)
Probab=29.65 E-value=14 Score=17.16 Aligned_cols=34 Identities=21% Similarity=0.362 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCC
Q ss_conf 9999999999996106763001023453000028540
Q gi|254780774|r 131 VIVFFVLSVVWATDIFAYFIGRFVGGPKIAPKISPRK 167 (269)
Q Consensus 131 ~~il~ll~~v~~~D~~AY~~G~~~Gk~kl~p~ISP~K 167 (269)
.--++.-.....+..|.| |.||-.|+.|++++.|
T Consensus 39 ~~~fLeYAaqFLsNlGNY---KSFGDtKFIPrl~~ek 72 (148)
T 3fvy_A 39 YQAFLVYAAGVYSNMGNY---KSFGDTKFVPNLPKEK 72 (148)
T ss_dssp HHHHHHHHHHHHHHTSSB---CTTTCBBCCCSSCHHH
T ss_pred HHHHHHHHHHHHHCCCCC---CCCCCCCCCCCCCHHH
T ss_conf 999999999998617775---7676767788999999
No 14
>>1dl2_A Class I alpha-1,2-mannosidase; alpha-alpha helix barrel; HET: NAG NDG BMA MAN; 1.54A {Saccharomyces cerevisiae} (A:1-44,A:392-478)
Probab=28.62 E-value=37 Score=14.41 Aligned_cols=46 Identities=7% Similarity=0.033 Sum_probs=32.5
Q ss_pred HHHHHHHHH------HCCCCCCC---CCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 799999987------47998544---87998771676264799999999999999
Q gi|254780774|r 213 DLFESYIKR------YFGIKQSG---WLLPGHGGVMDRVDGLVFSCFLMSAISFF 258 (269)
Q Consensus 213 DL~eS~iKR------~~~vKDsg---~llpGHGGilDR~Ds~l~~~p~~~~~~~f 258 (269)
|+++|..|+ .++|||.. |.--+.+...|+++|..++-.+=|+.+.|
T Consensus 73 ~~f~ai~k~~~~~~g~a~i~dv~~~~dv~~~~~~~~D~meSf~laETLKYlYLlF 127 (131)
T 1dl2_A 73 EIATSFFENTCVDCNDPKLRRFTSLSDCITLPTKKSNNMESFWLAETLKYLYILF 127 (131)
T ss_dssp HHHHHHHHHHEESTTCTTTCEECCEEESSSSSCEECSCCCHHHHHTHHHHHHHHT
T ss_pred HHHHHHHHHHEECCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 9999999863513577665574210133578998388654069998998899624
No 15
>>1r3e_A TRNA pseudouridine synthase B; RNA modification, pseudouridylation, lyase/RNA complex; HET: FHU; 2.10A {Thermotoga maritima} (A:1-57,A:190-224)
Probab=28.49 E-value=21 Score=16.04 Aligned_cols=24 Identities=21% Similarity=0.530 Sum_probs=19.1
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 99999874799854487998771676264
Q gi|254780774|r 215 FESYIKRYFGIKQSGWLLPGHGGVMDRVD 243 (269)
Q Consensus 215 ~eS~iKR~~~vKDsg~llpGHGGilDR~D 243 (269)
+-..+||..++|-- ||+|-||.+-
T Consensus 19 vV~~iKk~l~~kKV-----GH~GTLDP~A 42 (92)
T 1r3e_A 19 VVDEVRKKLKTRKV-----GHGGTLDPFA 42 (92)
T ss_dssp HHHHHHHHTTCSCE-----EESSCCCTTC
T ss_pred HHHHHHHHHCCCCC-----CCCCCCCCCC
T ss_conf 99999998688878-----7785679746
No 16
>>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} (A:125-232)
Probab=27.56 E-value=12 Score=17.46 Aligned_cols=33 Identities=15% Similarity=0.159 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 877999999874799854487998771676264
Q gi|254780774|r 211 LGDLFESYIKRYFGIKQSGWLLPGHGGVMDRVD 243 (269)
Q Consensus 211 ~GDL~eS~iKR~~~vKDsg~llpGHGGilDR~D 243 (269)
.-+..+|.=|-..-..|.-.++||||.+.|+-+
T Consensus 58 ~~~~~~sl~~l~~~~~~~~~v~pgHg~~~~~~~ 90 (108)
T 1a7t_A 58 VTAWPKTLDKVKAKFPSARYVVPGHGNYGGTEL 90 (108)
T ss_dssp TTTHHHHHHHHHHHCTTCSEEEESSSCCBCTHH
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHH
T ss_conf 999999999997028998099938998789899
No 17
>>2q0i_A Quinolone signal response protein; quorum sensing, pseudomonas quinolone signal, PQS, metall- beta-lactamase, iron, phosphodiesterase; 1.57A {Pseudomonas aeruginosa} (A:1-8,A:141-303)
Probab=27.41 E-value=16 Score=16.68 Aligned_cols=31 Identities=23% Similarity=0.383 Sum_probs=22.8
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 9999987479985448799877167626479
Q gi|254780774|r 215 FESYIKRYFGIKQSGWLLPGHGGVMDRVDGL 245 (269)
Q Consensus 215 ~eS~iKR~~~vKDsg~llpGHGGilDR~Ds~ 245 (269)
....++|-....+.-.++||||++.|.-+-.
T Consensus 71 ~~~sl~~l~~l~~~~~i~pgHG~~~~~~~~~ 101 (171)
T 2q0i_A 71 YLESLERLQRLPTLLQLIPGHGGLLRGRLAA 101 (171)
T ss_dssp HHHHHHHHHTSSCCSEEEESSSCEEETHHHH
T ss_pred HHHHHHHHHCCCCCCEEECCCCCCCCCHHHH
T ss_conf 9999999977899989999999712797999
No 18
>>2p97_A Hypothetical protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.65A {Anabaena variabilis atcc 29413} (A:102-201)
Probab=26.51 E-value=18 Score=16.39 Aligned_cols=29 Identities=21% Similarity=0.309 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf 779999998747998544879987716762
Q gi|254780774|r 212 GDLFESYIKRYFGIKQSGWLLPGHGGVMDR 241 (269)
Q Consensus 212 GDL~eS~iKR~~~vKDsg~llpGHGGilDR 241 (269)
.+..+| +||-.+.+|.--++||||+...+
T Consensus 58 ~~~~~S-l~~l~~l~~~~~v~pgHG~~~~~ 86 (100)
T 2p97_A 58 QKVVAS-VRRLAALEKVEAVLVGDGWSVFR 86 (100)
T ss_dssp HHHHHH-HHHHHTCTTCCEEEESBBCCBCS
T ss_pred HHHHHH-HHHHHCCCCCCEEECCCCCHHHC
T ss_conf 999999-99986479994999799944433
No 19
>>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A (A:1-369)
Probab=26.45 E-value=41 Score=14.17 Aligned_cols=40 Identities=15% Similarity=0.099 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 64301357667889998877999999874799854487998771
Q gi|254780774|r 194 CFELALAVSILLSVSCQLGDLFESYIKRYFGIKQSGWLLPGHGG 237 (269)
Q Consensus 194 ~~~~~i~l~~~~~i~~~~GDL~eS~iKR~~~vKDsg~llpGHGG 237 (269)
.++..+++|++.++.+. ..+.+||+.++-|.-+..|=||+
T Consensus 268 ~p~~a~iiG~iag~i~~----~~~~~~~~~~idD~~~v~~vHg~ 307 (369)
T 2b2h_A 268 DVKGAIVIGLVAGIVCY----LAMDFRIKKKIDESLDAWAIHGI 307 (369)
T ss_dssp CHHHHHHHHHHHHHHHH----HHHHHHHHTTCCCTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH----HHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 75799999998876567----78888775335653344430443
No 20
>>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} (A:120-228)
Probab=23.61 E-value=17 Score=16.49 Aligned_cols=34 Identities=15% Similarity=-0.029 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 8779999998747998544879987716762647
Q gi|254780774|r 211 LGDLFESYIKRYFGIKQSGWLLPGHGGVMDRVDG 244 (269)
Q Consensus 211 ~GDL~eS~iKR~~~vKDsg~llpGHGGilDR~Ds 244 (269)
.-+..+|.=|...--.|.-.++||||...++-+-
T Consensus 54 ~~~~~~sl~~l~~~~~d~~~i~pgHg~~~~~~~~ 87 (109)
T 1jjt_A 54 IEAWPKSAKLLKSKYGKAKLVVPSHSEVGDASLL 87 (109)
T ss_dssp TTTHHHHHHHHHHHTTTCSEEEESSSCCBCTHHH
T ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHH
T ss_conf 9999999999972189986999098976698999
No 21
>>1sgv_A TRNA pseudouridine synthase B; hinged motion, tRNA modification, structural genomics, PSI, protein structure initiative; 1.90A {Mycobacterium tuberculosis H37RV} (A:1-60,A:206-232)
Probab=21.25 E-value=34 Score=14.66 Aligned_cols=24 Identities=25% Similarity=0.558 Sum_probs=18.6
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 99999874799854487998771676264
Q gi|254780774|r 215 FESYIKRYFGIKQSGWLLPGHGGVMDRVD 243 (269)
Q Consensus 215 ~eS~iKR~~~vKDsg~llpGHGGilDR~D 243 (269)
+-..+||..++|-- ||+|-||.+-
T Consensus 22 vv~~iKk~l~~kKV-----GH~GTLDP~A 45 (87)
T 1sgv_A 22 VVGRCRRIFATRRV-----GHAGTLDPMA 45 (87)
T ss_dssp HHHHHHHHTTCSCE-----EESSCCCTTC
T ss_pred HHHHHHHHHCCCCC-----CCCCCCCCCC
T ss_conf 99999998488855-----6387889736
Done!