Query gi|254780774|ref|YP_003065187.1| phosphatidate cytidylyltransferase protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 269 No_of_seqs 184 out of 2275 Neff 8.3 Searched_HMMs 13730 Date Wed Jun 1 08:10:16 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780774.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2p97a1 d.157.1.12 (A:1-200) H 68.5 1.3 9.2E-05 21.2 2.1 34 215-248 160-198 (200) 2 d1u7ga_ f.44.1.1 (A:) Ammonium 56.7 5.4 0.0004 17.2 5.9 65 162-236 253-317 (383) 3 d2gmna1 d.157.1.1 (A:29-292) Z 42.4 4.3 0.00031 17.8 1.2 34 210-245 191-224 (264) 4 d1bh9b_ a.22.1.3 (B:) TAF(II)2 34.1 5.2 0.00038 17.3 0.6 28 208-235 47-74 (89) 5 d1m2xa_ d.157.1.1 (A:) Zn meta 33.3 3.7 0.00027 18.2 -0.3 32 212-243 173-204 (219) 6 d1qh5a_ d.157.1.2 (A:) Glyoxal 33.2 6.4 0.00046 16.8 0.9 32 209-240 147-178 (260) 7 d2q0ia1 d.157.1.14 (A:1-298) Q 32.4 4.3 0.00031 17.8 -0.1 29 211-240 198-226 (298) 8 d1vmea2 d.157.1.3 (A:1-250) RO 30.3 9.4 0.00069 15.7 1.4 33 213-246 207-240 (250) 9 d1k8wa5 d.265.1.2 (A:9-250) Ps 27.4 8 0.00058 16.1 0.6 24 216-244 21-44 (242) 10 d1mqoa_ d.157.1.1 (A:) Zn meta 26.2 6.9 0.0005 16.6 0.1 17 226-242 195-211 (221) 11 d1ycga2 d.157.1.3 (A:2-250) Ni 21.2 11 0.00079 15.3 0.3 28 212-239 203-231 (249) 12 d1sgva2 d.265.1.2 (A:3-235) Ps 20.8 14 0.001 14.6 0.9 23 216-243 21-43 (233) No 1 >d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena variabilis [TaxId: 1172]} Probab=68.53 E-value=1.3 Score=21.16 Aligned_cols=34 Identities=24% Similarity=0.341 Sum_probs=25.7 Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCH-----HHHHHHHHHH Q ss_conf 999998747998544879987716-----7626479999 Q gi|254780774|r 215 FESYIKRYFGIKQSGWLLPGHGGV-----MDRVDGLVFS 248 (269) Q Consensus 215 ~eS~iKR~~~vKDsg~llpGHGGi-----lDR~Ds~l~~ 248 (269) ....+||-...+|.-.++||||.. -+|++.++-. T Consensus 160 ~~~sl~rl~~l~~~~~i~pgHG~~~~~~~~~rl~~l~~~ 198 (200) T d2p97a1 160 VVASVRRLAALEKVEAVLVGDGWSVFRDGRDRLKELVAT 198 (200) T ss_dssp HHHHHHHHHTCTTCCEEEESBBCCBCSCHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCCEEECCCCCHHHCCHHHHHHHHHHH T ss_conf 999999986489994999799924755999999999985 No 2 >d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]} Probab=56.71 E-value=5.4 Score=17.20 Aligned_cols=65 Identities=20% Similarity=0.171 Sum_probs=44.0 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC Q ss_conf 028540244788998999998864210146656430135766788999887799999987479985448799877 Q gi|254780774|r 162 KISPRKTWSGSIGGLFCGVGVGVALLSFFCANCFELALAVSILLSVSCQLGDLFESYIKRYFGIKQSGWLLPGHG 236 (269) Q Consensus 162 ~ISP~KT~EG~igG~i~s~i~~~~~~~~~~~~~~~~~i~l~~~~~i~~~~GDL~eS~iKR~~~vKDsg~llpGHG 236 (269) |.|+-.+.+|.++|++...-. . ...+++..+++|.+.++.+..+ ...+||+.++-|--+..|=|| T Consensus 253 k~~~~~~~nG~LaGLVaita~----~---~~v~p~~A~~iG~i~g~i~~~~---~~~l~~~~~iDD~~~~~~vHg 317 (383) T d1u7ga_ 253 LPSLLGACSGAIAGLVGVTPA----C---GYIGVGGALIIGVVAGLAGLWG---VTMLKRLLRVDDPCDVFGVHG 317 (383) T ss_dssp SCCHHHHHHHHHHHHHHHTTT----T---TTSCHHHHHHHHHHHHHHHHHH---HHHHHHHHCSCCGGGHHHHHH T ss_pred CCCHHHHHHHHHHHHHHCCCC----C---CCCCHHHHHHHHHHCCHHHHHH---HHHHHHHCCCCCCCCEEEEHH T ss_conf 877999998865455402467----5---5346156899886210778899---999986601366465670321 No 3 >d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Bradyrhizobium japonicum [TaxId: 375]} Probab=42.41 E-value=4.3 Score=17.85 Aligned_cols=34 Identities=18% Similarity=0.117 Sum_probs=22.1 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH Q ss_conf 887799999987479985448799877167626479 Q gi|254780774|r 210 QLGDLFESYIKRYFGIKQSGWLLPGHGGVMDRVDGL 245 (269) Q Consensus 210 ~~GDL~eS~iKR~~~vKDsg~llpGHGGilDR~Ds~ 245 (269) ...|+.+|+ ||-...+ .-.++||||+..++-+.. T Consensus 191 ~~~~~~~sl-~~l~~l~-~d~v~pgHg~~~~~~~~~ 224 (264) T d2gmna1 191 IVDDYRATF-AKAKAMK-IDVLLGPHPEVYGMQAKR 224 (264) T ss_dssp HHHHHHHHH-HHHHHSC-CSEEECSSGGGTTHHHHH T ss_pred CHHHHHHHH-HHHHCCC-CCEEECCCCCCCCHHHHH T ss_conf 999999999-9997599-999999999723568888 No 4 >d1bh9b_ a.22.1.3 (B:) TAF(II)28 {Human (Homo sapiens) [TaxId: 9606]} Probab=34.08 E-value=5.2 Score=17.32 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=24.3 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCC Q ss_conf 9988779999998747998544879987 Q gi|254780774|r 208 SCQLGDLFESYIKRYFGIKQSGWLLPGH 235 (269) Q Consensus 208 ~~~~GDL~eS~iKR~~~vKDsg~llpGH 235 (269) =-++||++|-+..=.-.-+|.|.|.|-| T Consensus 47 KvFvGEiVE~A~~V~~~~~e~~PL~P~H 74 (89) T d1bh9b_ 47 KVFVGEVVEEALDVCEKWGEMPPLQPKH 74 (89) T ss_dssp HHHHHHHHHHHHHHHHHTTCCSSCCHHH T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHH T ss_conf 9999999999999999751689999499 No 5 >d1m2xa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238]} Probab=33.27 E-value=3.7 Score=18.23 Aligned_cols=32 Identities=16% Similarity=0.184 Sum_probs=18.6 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH Q ss_conf 77999999874799854487998771676264 Q gi|254780774|r 212 GDLFESYIKRYFGIKQSGWLLPGHGGVMDRVD 243 (269) Q Consensus 212 GDL~eS~iKR~~~vKDsg~llpGHGGilDR~D 243 (269) -+..+|.=|...-..|.-.++||||.+.|+=+ T Consensus 173 ~~~~~sl~~l~~~~~~~~~i~pgHg~~~~~~~ 204 (219) T d1m2xa_ 173 NDWTQSVHNIQQKFSGAQYVVAGHDDWKDQRS 204 (219) T ss_dssp HHHHHHHHHHHHHTTTCSEEEESBSCCCSTTH T ss_pred HHHHHHHHHHHHHCCCCCEEECCCCCCCCHHH T ss_conf 99999999998558999699989997467289 No 6 >d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Probab=33.24 E-value=6.4 Score=16.76 Aligned_cols=32 Identities=6% Similarity=0.114 Sum_probs=27.3 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH Q ss_conf 98877999999874799854487998771676 Q gi|254780774|r 209 CQLGDLFESYIKRYFGIKQSGWLLPGHGGVMD 240 (269) Q Consensus 209 ~~~GDL~eS~iKR~~~vKDsg~llpGHGGilD 240 (269) +-..++.+|..||-...-|.-.+.||||--.. T Consensus 147 g~~~~l~~si~~~l~~Lp~~t~vypGH~y~~~ 178 (260) T d1qh5a_ 147 GTADEMCKALLEVLGRLPPDTRVYCGHEYTIN 178 (260) T ss_dssp CCHHHHHHHHHTTTTTSCTTCEEEESBCCHHH T ss_pred CCHHHHHHHHHHHHHCCCCCCEEEECCCCCCC T ss_conf 76677665666598559951189222455777 No 7 >d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE {Pseudomonas aeruginosa [TaxId: 287]} Probab=32.36 E-value=4.3 Score=17.85 Aligned_cols=29 Identities=31% Similarity=0.599 Sum_probs=18.8 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCHHH Q ss_conf 877999999874799854487998771676 Q gi|254780774|r 211 LGDLFESYIKRYFGIKQSGWLLPGHGGVMD 240 (269) Q Consensus 211 ~GDL~eS~iKR~~~vKDsg~llpGHGGilD 240 (269) ..+..+| ++|-....|--.++||||++.+ T Consensus 198 ~~~~~~s-l~~l~~l~~~~~i~PgHG~~~~ 226 (298) T d2q0ia1 198 MEAYLES-LERLQRLPTLLQLIPGHGGLLR 226 (298) T ss_dssp HHHHHHH-HHHHHTSSCCSEEEESSSCEEE T ss_pred HHHHHHH-HHHHHCCCCCCEEECCCCCCCC T ss_conf 9999999-9999779999899999997127 No 8 >d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Probab=30.31 E-value=9.4 Score=15.71 Aligned_cols=33 Identities=21% Similarity=0.322 Sum_probs=19.8 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCHHH-HHHHHH Q ss_conf 7999999874799854487998771676-264799 Q gi|254780774|r 213 DLFESYIKRYFGIKQSGWLLPGHGGVMD-RVDGLV 246 (269) Q Consensus 213 DL~eS~iKR~~~vKDsg~llpGHGGilD-R~Ds~l 246 (269) +-....+||-.+. |...++||||-+++ +.+..+ T Consensus 207 ~~~~~sl~~l~~l-~~~~I~PGHGpi~~~~~~~~i 240 (250) T d1vmea2 207 NYILEGAEKLSSL-KIKALLPGHGLIWKKDPQRLL 240 (250) T ss_dssp HHHHHHHHHHHTS-CCSEEEESSSCBBSSCHHHHH T ss_pred HHHHHHHHHHHCC-CCCEEECCCCHHHHCCHHHHH T ss_conf 9999999998789-989999889766756999999 No 9 >d1k8wa5 d.265.1.2 (A:9-250) Pseudouridine synthase II TruB {Escherichia coli [TaxId: 562]} Probab=27.38 E-value=8 Score=16.15 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=18.1 Q ss_pred HHHHHHHCCCCCCCCCCCCCCCHHHHHHH Q ss_conf 99998747998544879987716762647 Q gi|254780774|r 216 ESYIKRYFGIKQSGWLLPGHGGVMDRVDG 244 (269) Q Consensus 216 eS~iKR~~~vKDsg~llpGHGGilDR~Ds 244 (269) -+.+||..+.| =.||+|-||.+-| T Consensus 21 v~~~k~~l~~k-----KvGh~GTLDP~As 44 (242) T d1k8wa5 21 LQKVKRIYNAN-----RAGHTGALDPLAT 44 (242) T ss_dssp HHHHHHHTTCS-----CEEESSCCCTTCE T ss_pred HHHHHHHHCCC-----CCCCCCCCCCCCC T ss_conf 99999982877-----5784774798661 No 10 >d1mqoa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 1396]} Probab=26.20 E-value=6.9 Score=16.57 Aligned_cols=17 Identities=35% Similarity=0.628 Sum_probs=13.0 Q ss_pred CCCCCCCCCCCCHHHHH Q ss_conf 85448799877167626 Q gi|254780774|r 226 KQSGWLLPGHGGVMDRV 242 (269) Q Consensus 226 KDsg~llpGHGGilDR~ 242 (269) -|...++||||.+.||= T Consensus 195 ~~~~~viPgHG~~~~~~ 211 (221) T d1mqoa_ 195 RNINAVVPGHGEVGDKG 211 (221) T ss_dssp CSCSEEEESSSCCBCTH T ss_pred CCCCEEEECCCCCCCHH T ss_conf 99999990999777989 No 11 >d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal domain {Moorella thermoacetica [TaxId: 1525]} Probab=21.20 E-value=11 Score=15.33 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=16.9 Q ss_pred HHHHHHHHHHHCCC-CCCCCCCCCCCCHH Q ss_conf 77999999874799-85448799877167 Q gi|254780774|r 212 GDLFESYIKRYFGI-KQSGWLLPGHGGVM 239 (269) Q Consensus 212 GDL~eS~iKR~~~v-KDsg~llpGHGGil 239 (269) .+...+.+||-... -|-..+.||||.++ T Consensus 203 ~~~~~~~l~~l~~l~l~~~~i~PgHGpv~ 231 (249) T d1ycga2 203 SNLITKKLDEIQKINLAIKTIAPSHGIIW 231 (249) T ss_dssp HHHHHHHHHHHHHTTCCCSEEEESSSCBB T ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCCHH T ss_conf 99999999999706999899990898047 No 12 >d1sgva2 d.265.1.2 (A:3-235) Pseudouridine synthase II TruB {Mycobacterium tuberculosis [TaxId: 1773]} Probab=20.77 E-value=14 Score=14.56 Aligned_cols=23 Identities=26% Similarity=0.569 Sum_probs=15.4 Q ss_pred HHHHHHHCCCCCCCCCCCCCCCHHHHHH Q ss_conf 9999874799854487998771676264 Q gi|254780774|r 216 ESYIKRYFGIKQSGWLLPGHGGVMDRVD 243 (269) Q Consensus 216 eS~iKR~~~vKDsg~llpGHGGilDR~D 243 (269) -..+||..+.|- -||+|-||-+- T Consensus 21 v~~vk~~~~~kK-----vGh~GTLDP~A 43 (233) T d1sgva2 21 VGRCRRIFATRR-----VGHAGTLDPMA 43 (233) T ss_dssp HHHHHHHTTCSC-----EEESSCCCTTC T ss_pred HHHHHHHHCCCC-----CCCCCCCCCCC T ss_conf 999999858684-----66686789765 Done!