Query         gi|254780774|ref|YP_003065187.1| phosphatidate cytidylyltransferase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 269
No_of_seqs    184 out of 2275
Neff          8.3 
Searched_HMMs 13730
Date          Wed Jun  1 08:10:16 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780774.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d2p97a1 d.157.1.12 (A:1-200) H  68.5     1.3 9.2E-05   21.2   2.1   34  215-248   160-198 (200)
  2 d1u7ga_ f.44.1.1 (A:) Ammonium  56.7     5.4  0.0004   17.2   5.9   65  162-236   253-317 (383)
  3 d2gmna1 d.157.1.1 (A:29-292) Z  42.4     4.3 0.00031   17.8   1.2   34  210-245   191-224 (264)
  4 d1bh9b_ a.22.1.3 (B:) TAF(II)2  34.1     5.2 0.00038   17.3   0.6   28  208-235    47-74  (89)
  5 d1m2xa_ d.157.1.1 (A:) Zn meta  33.3     3.7 0.00027   18.2  -0.3   32  212-243   173-204 (219)
  6 d1qh5a_ d.157.1.2 (A:) Glyoxal  33.2     6.4 0.00046   16.8   0.9   32  209-240   147-178 (260)
  7 d2q0ia1 d.157.1.14 (A:1-298) Q  32.4     4.3 0.00031   17.8  -0.1   29  211-240   198-226 (298)
  8 d1vmea2 d.157.1.3 (A:1-250) RO  30.3     9.4 0.00069   15.7   1.4   33  213-246   207-240 (250)
  9 d1k8wa5 d.265.1.2 (A:9-250) Ps  27.4       8 0.00058   16.1   0.6   24  216-244    21-44  (242)
 10 d1mqoa_ d.157.1.1 (A:) Zn meta  26.2     6.9  0.0005   16.6   0.1   17  226-242   195-211 (221)
 11 d1ycga2 d.157.1.3 (A:2-250) Ni  21.2      11 0.00079   15.3   0.3   28  212-239   203-231 (249)
 12 d1sgva2 d.265.1.2 (A:3-235) Ps  20.8      14   0.001   14.6   0.9   23  216-243    21-43  (233)

No 1  
>d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena variabilis [TaxId: 1172]}
Probab=68.53  E-value=1.3  Score=21.16  Aligned_cols=34  Identities=24%  Similarity=0.341  Sum_probs=25.7

Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCH-----HHHHHHHHHH
Q ss_conf             999998747998544879987716-----7626479999
Q gi|254780774|r  215 FESYIKRYFGIKQSGWLLPGHGGV-----MDRVDGLVFS  248 (269)
Q Consensus       215 ~eS~iKR~~~vKDsg~llpGHGGi-----lDR~Ds~l~~  248 (269)
                      ....+||-...+|.-.++||||..     -+|++.++-.
T Consensus       160 ~~~sl~rl~~l~~~~~i~pgHG~~~~~~~~~rl~~l~~~  198 (200)
T d2p97a1         160 VVASVRRLAALEKVEAVLVGDGWSVFRDGRDRLKELVAT  198 (200)
T ss_dssp             HHHHHHHHHTCTTCCEEEESBBCCBCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCEEECCCCCHHHCCHHHHHHHHHHH
T ss_conf             999999986489994999799924755999999999985


No 2  
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=56.71  E-value=5.4  Score=17.20  Aligned_cols=65  Identities=20%  Similarity=0.171  Sum_probs=44.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             028540244788998999998864210146656430135766788999887799999987479985448799877
Q gi|254780774|r  162 KISPRKTWSGSIGGLFCGVGVGVALLSFFCANCFELALAVSILLSVSCQLGDLFESYIKRYFGIKQSGWLLPGHG  236 (269)
Q Consensus       162 ~ISP~KT~EG~igG~i~s~i~~~~~~~~~~~~~~~~~i~l~~~~~i~~~~GDL~eS~iKR~~~vKDsg~llpGHG  236 (269)
                      |.|+-.+.+|.++|++...-.    .   ...+++..+++|.+.++.+..+   ...+||+.++-|--+..|=||
T Consensus       253 k~~~~~~~nG~LaGLVaita~----~---~~v~p~~A~~iG~i~g~i~~~~---~~~l~~~~~iDD~~~~~~vHg  317 (383)
T d1u7ga_         253 LPSLLGACSGAIAGLVGVTPA----C---GYIGVGGALIIGVVAGLAGLWG---VTMLKRLLRVDDPCDVFGVHG  317 (383)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTT----T---TTSCHHHHHHHHHHHHHHHHHH---HHHHHHHHCSCCGGGHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCC----C---CCCCHHHHHHHHHHCCHHHHHH---HHHHHHHCCCCCCCCEEEEHH
T ss_conf             877999998865455402467----5---5346156899886210778899---999986601366465670321


No 3  
>d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Bradyrhizobium japonicum [TaxId: 375]}
Probab=42.41  E-value=4.3  Score=17.85  Aligned_cols=34  Identities=18%  Similarity=0.117  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             887799999987479985448799877167626479
Q gi|254780774|r  210 QLGDLFESYIKRYFGIKQSGWLLPGHGGVMDRVDGL  245 (269)
Q Consensus       210 ~~GDL~eS~iKR~~~vKDsg~llpGHGGilDR~Ds~  245 (269)
                      ...|+.+|+ ||-...+ .-.++||||+..++-+..
T Consensus       191 ~~~~~~~sl-~~l~~l~-~d~v~pgHg~~~~~~~~~  224 (264)
T d2gmna1         191 IVDDYRATF-AKAKAMK-IDVLLGPHPEVYGMQAKR  224 (264)
T ss_dssp             HHHHHHHHH-HHHHHSC-CSEEECSSGGGTTHHHHH
T ss_pred             CHHHHHHHH-HHHHCCC-CCEEECCCCCCCCHHHHH
T ss_conf             999999999-9997599-999999999723568888


No 4  
>d1bh9b_ a.22.1.3 (B:) TAF(II)28 {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.08  E-value=5.2  Score=17.32  Aligned_cols=28  Identities=18%  Similarity=0.164  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             9988779999998747998544879987
Q gi|254780774|r  208 SCQLGDLFESYIKRYFGIKQSGWLLPGH  235 (269)
Q Consensus       208 ~~~~GDL~eS~iKR~~~vKDsg~llpGH  235 (269)
                      =-++||++|-+..=.-.-+|.|.|.|-|
T Consensus        47 KvFvGEiVE~A~~V~~~~~e~~PL~P~H   74 (89)
T d1bh9b_          47 KVFVGEVVEEALDVCEKWGEMPPLQPKH   74 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCSSCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf             9999999999999999751689999499


No 5  
>d1m2xa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238]}
Probab=33.27  E-value=3.7  Score=18.23  Aligned_cols=32  Identities=16%  Similarity=0.184  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             77999999874799854487998771676264
Q gi|254780774|r  212 GDLFESYIKRYFGIKQSGWLLPGHGGVMDRVD  243 (269)
Q Consensus       212 GDL~eS~iKR~~~vKDsg~llpGHGGilDR~D  243 (269)
                      -+..+|.=|...-..|.-.++||||.+.|+=+
T Consensus       173 ~~~~~sl~~l~~~~~~~~~i~pgHg~~~~~~~  204 (219)
T d1m2xa_         173 NDWTQSVHNIQQKFSGAQYVVAGHDDWKDQRS  204 (219)
T ss_dssp             HHHHHHHHHHHHHTTTCSEEEESBSCCCSTTH
T ss_pred             HHHHHHHHHHHHHCCCCCEEECCCCCCCCHHH
T ss_conf             99999999998558999699989997467289


No 6  
>d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.24  E-value=6.4  Score=16.76  Aligned_cols=32  Identities=6%  Similarity=0.114  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
Q ss_conf             98877999999874799854487998771676
Q gi|254780774|r  209 CQLGDLFESYIKRYFGIKQSGWLLPGHGGVMD  240 (269)
Q Consensus       209 ~~~GDL~eS~iKR~~~vKDsg~llpGHGGilD  240 (269)
                      +-..++.+|..||-...-|.-.+.||||--..
T Consensus       147 g~~~~l~~si~~~l~~Lp~~t~vypGH~y~~~  178 (260)
T d1qh5a_         147 GTADEMCKALLEVLGRLPPDTRVYCGHEYTIN  178 (260)
T ss_dssp             CCHHHHHHHHHTTTTTSCTTCEEEESBCCHHH
T ss_pred             CCHHHHHHHHHHHHHCCCCCCEEEECCCCCCC
T ss_conf             76677665666598559951189222455777


No 7  
>d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE {Pseudomonas aeruginosa [TaxId: 287]}
Probab=32.36  E-value=4.3  Score=17.85  Aligned_cols=29  Identities=31%  Similarity=0.599  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
Q ss_conf             877999999874799854487998771676
Q gi|254780774|r  211 LGDLFESYIKRYFGIKQSGWLLPGHGGVMD  240 (269)
Q Consensus       211 ~GDL~eS~iKR~~~vKDsg~llpGHGGilD  240 (269)
                      ..+..+| ++|-....|--.++||||++.+
T Consensus       198 ~~~~~~s-l~~l~~l~~~~~i~PgHG~~~~  226 (298)
T d2q0ia1         198 MEAYLES-LERLQRLPTLLQLIPGHGGLLR  226 (298)
T ss_dssp             HHHHHHH-HHHHHTSSCCSEEEESSSCEEE
T ss_pred             HHHHHHH-HHHHHCCCCCCEEECCCCCCCC
T ss_conf             9999999-9999779999899999997127


No 8  
>d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=30.31  E-value=9.4  Score=15.71  Aligned_cols=33  Identities=21%  Similarity=0.322  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCHHH-HHHHHH
Q ss_conf             7999999874799854487998771676-264799
Q gi|254780774|r  213 DLFESYIKRYFGIKQSGWLLPGHGGVMD-RVDGLV  246 (269)
Q Consensus       213 DL~eS~iKR~~~vKDsg~llpGHGGilD-R~Ds~l  246 (269)
                      +-....+||-.+. |...++||||-+++ +.+..+
T Consensus       207 ~~~~~sl~~l~~l-~~~~I~PGHGpi~~~~~~~~i  240 (250)
T d1vmea2         207 NYILEGAEKLSSL-KIKALLPGHGLIWKKDPQRLL  240 (250)
T ss_dssp             HHHHHHHHHHHTS-CCSEEEESSSCBBSSCHHHHH
T ss_pred             HHHHHHHHHHHCC-CCCEEECCCCHHHHCCHHHHH
T ss_conf             9999999998789-989999889766756999999


No 9  
>d1k8wa5 d.265.1.2 (A:9-250) Pseudouridine synthase II TruB {Escherichia coli [TaxId: 562]}
Probab=27.38  E-value=8  Score=16.15  Aligned_cols=24  Identities=25%  Similarity=0.479  Sum_probs=18.1

Q ss_pred             HHHHHHHCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             99998747998544879987716762647
Q gi|254780774|r  216 ESYIKRYFGIKQSGWLLPGHGGVMDRVDG  244 (269)
Q Consensus       216 eS~iKR~~~vKDsg~llpGHGGilDR~Ds  244 (269)
                      -+.+||..+.|     =.||+|-||.+-|
T Consensus        21 v~~~k~~l~~k-----KvGh~GTLDP~As   44 (242)
T d1k8wa5          21 LQKVKRIYNAN-----RAGHTGALDPLAT   44 (242)
T ss_dssp             HHHHHHHTTCS-----CEEESSCCCTTCE
T ss_pred             HHHHHHHHCCC-----CCCCCCCCCCCCC
T ss_conf             99999982877-----5784774798661


No 10 
>d1mqoa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 1396]}
Probab=26.20  E-value=6.9  Score=16.57  Aligned_cols=17  Identities=35%  Similarity=0.628  Sum_probs=13.0

Q ss_pred             CCCCCCCCCCCCHHHHH
Q ss_conf             85448799877167626
Q gi|254780774|r  226 KQSGWLLPGHGGVMDRV  242 (269)
Q Consensus       226 KDsg~llpGHGGilDR~  242 (269)
                      -|...++||||.+.||=
T Consensus       195 ~~~~~viPgHG~~~~~~  211 (221)
T d1mqoa_         195 RNINAVVPGHGEVGDKG  211 (221)
T ss_dssp             CSCSEEEESSSCCBCTH
T ss_pred             CCCCEEEECCCCCCCHH
T ss_conf             99999990999777989


No 11 
>d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal domain {Moorella thermoacetica [TaxId: 1525]}
Probab=21.20  E-value=11  Score=15.33  Aligned_cols=28  Identities=18%  Similarity=0.239  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHCCC-CCCCCCCCCCCCHH
Q ss_conf             77999999874799-85448799877167
Q gi|254780774|r  212 GDLFESYIKRYFGI-KQSGWLLPGHGGVM  239 (269)
Q Consensus       212 GDL~eS~iKR~~~v-KDsg~llpGHGGil  239 (269)
                      .+...+.+||-... -|-..+.||||.++
T Consensus       203 ~~~~~~~l~~l~~l~l~~~~i~PgHGpv~  231 (249)
T d1ycga2         203 SNLITKKLDEIQKINLAIKTIAPSHGIIW  231 (249)
T ss_dssp             HHHHHHHHHHHHHTTCCCSEEEESSSCBB
T ss_pred             HHHHHHHHHHHHCCCCCCCEEEECCCCHH
T ss_conf             99999999999706999899990898047


No 12 
>d1sgva2 d.265.1.2 (A:3-235) Pseudouridine synthase II TruB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=20.77  E-value=14  Score=14.56  Aligned_cols=23  Identities=26%  Similarity=0.569  Sum_probs=15.4

Q ss_pred             HHHHHHHCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             9999874799854487998771676264
Q gi|254780774|r  216 ESYIKRYFGIKQSGWLLPGHGGVMDRVD  243 (269)
Q Consensus       216 eS~iKR~~~vKDsg~llpGHGGilDR~D  243 (269)
                      -..+||..+.|-     -||+|-||-+-
T Consensus        21 v~~vk~~~~~kK-----vGh~GTLDP~A   43 (233)
T d1sgva2          21 VGRCRRIFATRR-----VGHAGTLDPMA   43 (233)
T ss_dssp             HHHHHHHTTCSC-----EEESSCCCTTC
T ss_pred             HHHHHHHHCCCC-----CCCCCCCCCCC
T ss_conf             999999858684-----66686789765


Done!