RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780774|ref|YP_003065187.1| phosphatidate
cytidylyltransferase protein [Candidatus Liberibacter asiaticus str.
psy62]
(269 letters)
>gnl|CDD|110170 pfam01148, CTP_transf_1, Cytidylyltransferase family. The members
of this family are integral membrane protein
cytidylyltransferases. The family includes phosphatidate
cytidylyltransferase EC:2.7.7.41 as well as Sec59 from
yeast. Sec59 is a dolichol kinase EC:2.7.1.108.
Length = 259
Score = 126 bits (319), Expect = 5e-30
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 5/256 (1%)
Query: 8 RIVTGLVMACSFILISWIGGIWFRLWTMVMSLCIYYEWKIITG--SVSLSLSEKILGLFT 65
RI+T +V+ F+++ ++G + F L + + YE + S L
Sbjct: 3 RIITHIVLILIFLILLFLGPLIFLLLVAAIIILALYELIRLLRLKFSSRLLLLTRGLGLI 62
Query: 66 FFLVFFMIITGFFKSAFFLLMLYSFIDWMISIMKNRAFWRALGVVYS--GLPSIALSSLR 123
F+L+ +++ G A F L+L + ++ A+ R + + L
Sbjct: 63 FYLLGLLLVYGEGLLALFGLVLLVIPVLWLLVLPVLAYHRVSSTLLPLFYVGLFLSLLLI 122
Query: 124 GDDAKGCVIVFFVLSVVWATDIFAYFIGRFVGGPKIAPKISPRKTWSGSIGGLFCGVGVG 183
+ G + ++ VVWA+DI AYF+G+ G K+APKISP KTW G +GG V VG
Sbjct: 123 TNPFFGLLWALLLILVVWASDIGAYFVGKAFGKHKLAPKISPNKTWEGFLGGFVAAVLVG 182
Query: 184 VALLSFFCANCFEL-ALAVSILLSVSCQLGDLFESYIKRYFGIKQSGWLLPGHGGVMDRV 242
+ L AL + +L S+ Q GDL ES KR FGIK SG L+PGHGG++DR+
Sbjct: 183 LLFSLLLGPYPSPLHALLLGLLASLVGQFGDLVESGFKRDFGIKDSGKLIPGHGGILDRL 242
Query: 243 DGLVFSCFLMSAISFF 258
D L+F+ + A +
Sbjct: 243 DSLLFAAPIFYAFLYI 258
>gnl|CDD|30920 COG0575, CdsA, CDP-diglyceride synthetase [Lipid metabolism].
Length = 265
Score = 122 bits (308), Expect = 9e-29
Identities = 85/263 (32%), Positives = 129/263 (49%), Gaps = 8/263 (3%)
Query: 4 ELKWRIVTGLVMACSFILISWIGGIWFRLWTMVMSLCIYYEWKIITGSVSLSLSEKILGL 63
LK R++T +V+ F+L +GG++F L +++++ E L+ +
Sbjct: 1 MLKQRVITAIVLLILFLLALLVGGLYFALLVLLLAILAILEAYRANRFAVLAGPLILGLP 60
Query: 64 FTFFLVFFMIITGFFKSAFFLLMLYSFI-----DWMISIMKNRAFWRALGVVYSGLPSIA 118
LV LL + + + ++ G++Y G+ +A
Sbjct: 61 IDLGLVLLDGRRLLGDGKETLLGFLLGFLLGLVLLGVIYYLSDSLFKLFGLLYVGVGLLA 120
Query: 119 LSSLRGDDA-KGCVIVFFVLSVVWATDIFAYFIGRFVGGPKIAPKISPRKTWSGSIGGLF 177
L R G +++ + VWA DI AYF+GR G K+APKISP+KTW G IGG
Sbjct: 121 LLPFRLGVLYSGLILLLLLFLGVWAGDIGAYFVGRRFGKHKLAPKISPKKTWEGFIGGAL 180
Query: 178 CGVGVGVALLSFFCANC--FELALAVSILLSVSCQLGDLFESYIKRYFGIKQSGWLLPGH 235
V V V ++ + L + +LL ++ QLGDLFESYIKR GIK SGWL+PGH
Sbjct: 181 GAVLVAVLVIFLLSSLILNIWTLLILGLLLVLTSQLGDLFESYIKRLLGIKDSGWLIPGH 240
Query: 236 GGVMDRVDGLVFSCFLMSAISFF 258
GG++DR D L+F + + F
Sbjct: 241 GGILDRFDSLLFVAVYLFLLLFI 263
>gnl|CDD|34227 COG4589, COG4589, Predicted CDP-diglyceride
synthetase/phosphatidate cytidylyltransferase [General
function prediction only].
Length = 303
Score = 80.3 bits (198), Expect = 5e-16
Identities = 50/120 (41%), Positives = 68/120 (56%), Gaps = 1/120 (0%)
Query: 129 GCVIVFFVLSVVWATDIFAYFIGRFVGGPKIAPKISPRKTWSGSIGGLFCGVGVGVALLS 188
G ++V F+L + D+ Y G+ G KI PK+SP KT G IGG+ + A+L
Sbjct: 172 GALLVIFLLILTELNDVAQYVWGKSFGKRKIVPKVSPNKTVEGLIGGILTTMIAS-AILG 230
Query: 189 FFCANCFELALAVSILLSVSCQLGDLFESYIKRYFGIKQSGWLLPGHGGVMDRVDGLVFS 248
AL +L+ +S GDL S IKR G+K SG LLPGHGG++DRVD L+F+
Sbjct: 231 LLTPLNTLQALLAGLLIGLSGFCGDLVMSAIKRDVGVKDSGKLLPGHGGILDRVDSLIFT 290
>gnl|CDD|36653 KOG1440, KOG1440, KOG1440, CDP-diacylglycerol synthase [Lipid
transport and metabolism].
Length = 432
Score = 60.3 bits (146), Expect = 6e-10
Identities = 78/328 (23%), Positives = 115/328 (35%), Gaps = 78/328 (23%)
Query: 8 RIVTGLVMACSFILISWIGGIWFRLWTMVMSLCIYYEWKIITGSVS----LSLSEKILGL 63
R + L M F LI ++G + +V+ + + E I VS L +
Sbjct: 69 RGILTLAMISGFFLIIYMGHKYLMALVLVIQIKCFKEIIAIGRKVSREKDLPWFRLLNWY 128
Query: 64 FTF---FLVFFMIITGFFKSAF-----------------FLLMLYSFIDWMISIMKNR-- 101
F + V+ I+ +F + F F L L F+ +++S+ K
Sbjct: 129 FLLTVNYFVYGEILVAYFAAVFIRDRFLFFLVRYHRFICFALYLIGFVSFVLSLRKGIYK 188
Query: 102 -AFWRALGVVYSGLPSIALSSL-RGDDAKGCVIVFFVLSVVWATDIFAYFIGRFVGGPKI 159
F S L + S L + +G +V DIFAY G F G +
Sbjct: 189 LQFGLFAWTHMSLLLVVTQSHLVIQNLFEGLFWFLVPAGLVICNDIFAYLFGFFFGKTPL 248
Query: 160 APKISPRKTWSGSIGGLFCGVGVGV----ALLSFFCANC------------------FEL 197
K+SP+KTW G IGG F V G+ L + C FE
Sbjct: 249 I-KLSPKKTWEGFIGGTFGTVVFGILFSYVLGHYTFFTCPVKDFSTTPLLSCEPKPLFEP 307
Query: 198 --------------------------ALAVSILLSVSCQLGDLFESYIKRYFGIKQSGWL 231
++A+ + S G F S KR F IK G
Sbjct: 308 QTYGLPGVISITIRLKSISLPPFQFHSIALGLFASFIAPFGGFFASGFKRAFKIKDFGDS 367
Query: 232 LPGHGGVMDRVDGLVF-SCFLMSAISFF 258
+PGHGG+ DR+D + + F I F
Sbjct: 368 IPGHGGITDRMDCQILMATFAYVYIQSF 395
>gnl|CDD|110829 pfam01864, DUF46, Putative integral membrane protein DUF46. This
archaebacterial protein has no known function. It
contains several predicted transmembrane regions,
suggesting it is an integral membrane protein.
Length = 175
Score = 36.3 bits (84), Expect = 0.010
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 167 KTWSGSIGGLFCGVGVGV--ALLSFFCANCFELALAVSI------LLSVSCQLGDLFESY 218
KTW G +GG+ G VG+ L + + +I LLS +GDL S+
Sbjct: 48 KTWRGFVGGVAVGTLVGIIQYALEKLSGLAIYSSGSFNIFVILAFLLSFGALVGDLCGSF 107
Query: 219 IKRYFGI 225
IKR I
Sbjct: 108 IKRRLNI 114
>gnl|CDD|39654 KOG4453, KOG4453, KOG4453, Predicted ER membrane protein [Function
unknown].
Length = 269
Score = 32.2 bits (73), Expect = 0.16
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 144 DIFAYFIGRFVGGPKIAPKISPRKTWSGSIGGLFCGVGVGVALLSFF 190
D A +GR G PK + K+ +GSIG GV + + L +F
Sbjct: 169 DTIADTVGRKFG--STTPKYAKNKSLAGSIGAFTFGVFICIVYLGYF 213
>gnl|CDD|133106 cd06248, M14_CPA_CPB_like, Peptidase M14 Carboxypeptidase A/B-like
subfamily: This is one of two main M14 carboxypeptidase
subfamilies, defined by sequence and structural
homology, the other being N/E. Carboxypeptidases (CPs)
hydrolyze single, C-terminal amino acids from
polypeptide chains. They have a recognition site for the
free C-terminal carboxyl group, which is a key
determinant of specificity. Majority of the proteins in
this subfamily have not been characterized as yet. The
A/B enzymes are normally synthesized as inactive
precursors containing preceding signal peptide, followed
by a globular N-terminal pro-region linked to the
enzyme; the proenzymes are called procarboxypeptidases.
These enzymes exhibit distinct substrate specificity
pattern; Carboxypeptidase A-like (CPA-like) enzymes
favor hydrophobic residues while carboxypeptidase B-like
(CPB-like) enzymes only cleave the basic residues lysine
or arginine. There are nine members in the A/B family:
CPA1, CPA2, CPA3, CPA4, CPA5, CPA6, CPB, CPO and CPU.
CPA1, CPA2 and CPB are produced by the pancreas. The A
forms have slightly different specificities, with CPA1
preferring aliphatic and small aromatic residues, and
CPA2 preferring the bulkier aromatic side chains. CPA3
is found in secretory granules of mast cells and
functions in inflammatory processes. CPA4, detected in
hormone-regulated tissues, is thought to play a role in
prostate cancer. CPA5 is present in discrete regions of
pituitary and other tissues, and cleaves aliphatic
C-terminal residues. CPA6 is highly expressed in
embryonic brain and optic muscle, suggesting that it may
play a specific role in cell migration and axonal
guidance. CPU (also called CPB2) is produced and
secreted by the liver as the inactive precursor PCPU,
commonly referred to as thrombin-activatable
fibrinolysis inhibitor (TAFI). Little is known about CPO
but it has been suggested to have specificity for acidic
residues.
Length = 304
Score = 30.7 bits (70), Expect = 0.44
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 22 ISWIGGIWFRLWTMVMSLCIYYEWKIITGSVSLSLSEKILGLFTFFLV 69
I G + R W M++ Y ++++TG S + +L F F+++
Sbjct: 57 IVIHGTVHAREWISTMTVE-YLAYQLLTGYGSDATVTALLDKFDFYII 103
>gnl|CDD|38138 KOG2927, KOG2927, KOG2927, Membrane component of ER protein
translocation complex [Intracellular trafficking,
secretion, and vesicular transport].
Length = 372
Score = 29.6 bits (66), Expect = 0.96
Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 17 CSFILISWIGGIWFRLWTMVMSLCIYYEWKIITGSVSLSLSEKILGLFTFFLVFFMIITG 76
++ + + F LW M +YY G ++ L I+ L F + + I+TG
Sbjct: 194 GVLFVLVTLAIVLFPLWPRRMRQGVYYLSIGAGGFLAFILVLAIVRLILFGITW--ILTG 251
Query: 77 FFKSAFFL 84
+
Sbjct: 252 GKHGFWLF 259
>gnl|CDD|31460 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy
production and conversion].
Length = 660
Score = 29.1 bits (65), Expect = 1.2
Identities = 11/89 (12%), Positives = 33/89 (37%), Gaps = 3/89 (3%)
Query: 26 GGIWFRLWTMVMSLCIYYEWKIITGSVSLSLSEKILGLFTFFLVFFMIITGFFKSAFFLL 85
+W + ++ L + Y+W + + G+ +V +++ G +L
Sbjct: 494 QLLWLLIILGLLLLILGYKWSVPELLGMVGAMFGAFGILGLLVVGLILVPGLVAIGQGIL 553
Query: 86 MLYSFIDWMISIMKNRAFWRALGVVYSGL 114
+ + ++ ++ R L + +G
Sbjct: 554 GFEGVLSLLSDVL---SYLRLLALGLAGA 579
>gnl|CDD|30519 COG0170, SEC59, Dolichol kinase [Lipid metabolism].
Length = 216
Score = 28.0 bits (62), Expect = 2.5
Identities = 27/169 (15%), Positives = 50/169 (29%), Gaps = 10/169 (5%)
Query: 47 IITGSVSLSLSEKILGLFTFFLVFFMIITGFFKSAFFLLMLYSFIDWMI-SIMKNRAFWR 105
I+ ++ L IL + + L+L + + KN
Sbjct: 36 ILRDKFAIILFLLILLIILLLEFELFRLLIPGLEGKVTLLLSELLSLIEREREKNGPGLG 95
Query: 106 ALGVVYSGLPSIALSSLRGDDAKGCVIVFFVLSVVWATDIFAYFIGRFVGGPKIAPKISP 165
+ G +L V + +L + D A IG+ G K +
Sbjct: 96 GIIYFIGGGLLASLLFPIE------VAIAGILVLALG-DGLASIIGKRYGRHK--RILGN 146
Query: 166 RKTWSGSIGGLFCGVGVGVALLSFFCANCFELALAVSILLSVSCQLGDL 214
K+ GS+ V + L + A + V + + + L L
Sbjct: 147 GKSLEGSLAFFIASFLVLLVLYGYLGAFVGAIGALVLEVGATATSLELL 195
>gnl|CDD|146749 pfam04277, OAD_gamma, Oxaloacetate decarboxylase, gamma chain.
Length = 75
Score = 27.6 bits (62), Expect = 3.4
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 129 GCVIVFFVLSV-VWATDIFAYFIGRFVGGPKIAPKISPRKT 168
G IVF L + + + + + +F APK +P
Sbjct: 11 GMGIVFLFLILLILLIKLMSKLVNKFAPEEPPAPKPAPAPK 51
>gnl|CDD|36634 KOG1420, KOG1420, KOG1420, Ca2+-activated K+ channel Slowpoke,
alpha subunit [Inorganic ion transport and metabolism,
Signal transduction mechanisms].
Length = 1103
Score = 27.0 bits (59), Expect = 6.2
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 12/59 (20%)
Query: 61 LGLFTFFLVFFMI-ITGFFKSAFFLLMLYSFIDW------MISIMKNRA-----FWRAL 107
L FFLV+F I +F L +YS +D+ +SI NR+ F RAL
Sbjct: 169 LAFNIFFLVYFFIRFIAASDKLWFWLEMYSVVDFFTIPPSFVSIYLNRSWLGLRFLRAL 227
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.334 0.147 0.484
Gapped
Lambda K H
0.267 0.0690 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,594,424
Number of extensions: 207646
Number of successful extensions: 1778
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1621
Number of HSP's successfully gapped: 307
Length of query: 269
Length of database: 6,263,737
Length adjustment: 92
Effective length of query: 177
Effective length of database: 4,275,709
Effective search space: 756800493
Effective search space used: 756800493
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 56 (25.4 bits)