RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780774|ref|YP_003065187.1| phosphatidate
cytidylyltransferase protein [Candidatus Liberibacter asiaticus str.
psy62]
         (269 letters)



>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+,
          K+-ATPase, P-type ATPase, membrane protein, hydrolase,
          aluminium fluoride, ATP-binding; 6.50A {Sus scrofa}
          (B:)
          Length = 290

 Score = 29.5 bits (66), Expect = 0.44
 Identities = 10/48 (20%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 45 WKIITGSVSLSLSEKILGLFTFFLVFFMIITGFFKSAFFLLMLYSFID 92
          W   TG +      + + +  +++ F+++++G F  A  + +L   ID
Sbjct: 22 WNPDTGQMLGRTLSRWVWISLYYVAFYVVMSGIF--ALCIYVLMRTID 67


>2jer_A Agmatine deiminase; hydrolase, tetramer, AGDI, 5- fold
           pseudosymmetric structure, agmatine degradation pathway,
           covalent amidino adduct; HET: AGT; 1.65A {Enterococcus
           faecalis} (A:157-289)
          Length = 133

 Score = 27.8 bits (62), Expect = 1.4
 Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 2/30 (6%)

Query: 215 FESYIKRYFGIKQSGWLLPGHGGVMDRVDG 244
            E  +  Y  +++  WL  G G   +  +G
Sbjct: 34  IEQKLCDYLNVEKVLWL--GDGIDPEETNG 61


>1xkn_A Putative peptidyl-arginine deiminase; alpha-beta protein,
           NESG, structural genomics, protein structure initiative,
           PSI; 1.60A {Chlorobium tepidum tls} (A:157-273)
          Length = 117

 Score = 28.1 bits (63), Expect = 1.4
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)

Query: 215 FESYIKRYFGIKQSGWLLPGHGGVMDRVDG 244
            E+ ++RY GI++  WL  G G   D  DG
Sbjct: 33  IEAQLRRYLGIEKVLWL--GDGIAGDDTDG 60


>2ewo_A Putative agmatine deiminase; Q8DW17, SMR6, X-RAY, structural
           genomics, PSI, protein structure initiative; 2.90A
           {Streptococcus mutans} (A:161-293)
          Length = 133

 Score = 27.8 bits (62), Expect = 1.8
 Identities = 6/30 (20%), Positives = 10/30 (33%), Gaps = 2/30 (6%)

Query: 215 FESYIKRYFGIKQSGWLLPGHGGVMDRVDG 244
            E  +K Y    +  W+    G      +G
Sbjct: 34  IEDKLKDYLNCVKVLWV--KDGIDPYETNG 61


>3hvm_A Agmatine deiminase; hydrolase; 2.10A {Helicobacter pylori
           J99} PDB: 2cmu_A (A:140-198)
          Length = 59

 Score = 26.8 bits (60), Expect = 3.0
 Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 2/25 (8%)

Query: 216 ESYIKRYFGIKQSGWLLPGHGGVMD 240
           E+ +K+  G KQ  W    +G +  
Sbjct: 35  ETMLKKELGAKQVLWY--SYGYLKG 57


>2p97_A Hypothetical protein; structural genomics, joint center for
           structural genomics, JCSG, protein structure initiative,
           PSI-2; HET: MSE; 1.65A {Anabaena variabilis atcc 29413}
           (A:102-201)
          Length = 100

 Score = 26.7 bits (59), Expect = 3.5
 Identities = 6/32 (18%), Positives = 14/32 (43%), Gaps = 1/32 (3%)

Query: 211 LGDLFESYIKRYFGIKQSGWLLPGHGGVMDRV 242
              +  S ++R   +++   +L G G  + R 
Sbjct: 57  KQKVVAS-VRRLAALEKVEAVLVGDGWSVFRD 87


>1zbr_A AAQ65385, conserved hypothetical protein; alpha-beta
           protein., structural genomics, PSI, protein structure
           initiative; 2.60A {Porphyromonas gingivalis W83}
           (A:146-204)
          Length = 59

 Score = 26.1 bits (58), Expect = 5.5
 Identities = 8/47 (17%), Positives = 14/47 (29%), Gaps = 11/47 (23%)

Query: 203 ILLSVSCQLGDL---------FESYIKRYFGIKQSGWLLPGHGGVMD 240
           +L + SC                  +K   G+ +   L   HG +  
Sbjct: 13  LLTTDSCLFEPNRNAGLSRTAIIDTLKESLGVSRVLSL--RHGALAG 57


>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA
           component; helix; 2.50A {Streptococcus mutans} (A:)
          Length = 120

 Score = 25.8 bits (57), Expect = 5.7
 Identities = 6/19 (31%), Positives = 12/19 (63%)

Query: 251 LMSAISFFGIATEMIGVLK 269
           LM+ ++   +A EM+ + K
Sbjct: 100 LMTTMTLREVAIEMLELYK 118


>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component;
           mutagenesis, transferase, sugar transport,
           phosphotransferase; NMR {Escherichia coli} (A:)
          Length = 103

 Score = 25.7 bits (57), Expect = 6.5
 Identities = 5/19 (26%), Positives = 12/19 (63%)

Query: 251 LMSAISFFGIATEMIGVLK 269
           LM+++    + TE+I + +
Sbjct: 81  LMTSMLARELITELIELHE 99


>1at3_A Herpes simplex virus type II protease; serine protease,
           viral protease, HSV2 protease; HET: DFP; 2.50A {Human
           herpesvirus 2} (A:)
          Length = 247

 Score = 25.5 bits (56), Expect = 8.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 105 RALGVVYSGLPSIALSSLRGDD 126
           R L ++ + LPS++LS+ R  D
Sbjct: 116 RLLYLITNYLPSVSLSTKRRGD 137


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.334    0.147    0.484 

Gapped
Lambda     K      H
   0.267   0.0677    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,156,176
Number of extensions: 94389
Number of successful extensions: 407
Number of sequences better than 10.0: 1
Number of HSP's gapped: 405
Number of HSP's successfully gapped: 51
Length of query: 269
Length of database: 4,956,049
Length adjustment: 87
Effective length of query: 182
Effective length of database: 2,015,014
Effective search space: 366732548
Effective search space used: 366732548
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 54 (24.7 bits)