HHsearch alignment for GI: 254780775 and conserved domain: TIGR00055

>TIGR00055 uppS undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) . This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts.; GO: 0016740 transferase activity, 0008152 metabolic process.
Probab=100.00  E-value=0  Score=679.50  Aligned_cols=228  Identities=41%  Similarity=0.776  Sum_probs=225.6

Q ss_pred             CCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHH--
Q ss_conf             882699984885189997599877989999999999999999769868999720233653230124888898886310--
Q gi|254780775|r   10 PPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLK--   87 (243)
Q Consensus        10 ~P~HIaiImDGNrRwAk~~gl~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~--   87 (243)
T Consensus         1 ~P~HVa~IMDGNgRwAk~~~k~r~~GH~~G~~~l~~~l~~c~~~Gv~~lTlYAFS~ENw~RP~~EV~~LM~Lf~~~L~ei   80 (237)
T TIGR00055         1 VPKHVAIIMDGNGRWAKKKGKDRKYGHEAGVKSLRRILRWCADLGVECLTLYAFSTENWKRPKEEVDALMELFEKKLDEI   80 (237)
T ss_pred             CCCEEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             98426787176169998538834455687789999999999866930575332100025797788999999999999997


Q ss_pred             --HCCCCCCC-CCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf             --00010000-283263138744510000235899987420254311589724881578998778764367648968778
Q gi|254780775|r   88 --KGFYSLKK-NNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHD  164 (243)
Q Consensus        88 --~~~~~~~~-~~iki~~iGd~~~lp~~i~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~l~~~~~~~~~~~~~  164 (243)
T Consensus        81 a~re~~~~~~l~nvR~RiiGd~s~l~~~Lq~~I~~~ee~T~~n~~~tl~iA~nYGGr~ei~~a~k~~~e~v~~g~~~~~~  160 (237)
T TIGR00055        81 AEREVKELHKLYNVRIRIIGDLSLLSKELQEKIKKAEEDTKNNTDFTLNIAFNYGGRNEILHAVKQIAEKVKKGKLEPED  160 (237)
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf             47899853402380589985565689889999999997412788479998507898688999999987630026888644


Q ss_pred             HHHHHHCCCCCCCCCC-C-CCEEEECCCCEECCCCCCCHHCC-CE-EEECCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf             1155310113367877-6-52699457852133656401135-53-8863687888898999999999863005058
Q gi|254780775|r  165 VDSSLIAKYLDTSDVP-D-PDLIIRTGGEKRLSDFLLWQVAY-SE-FVFIPEYWPDFSRELFFHALNQYNLRDRRFG  237 (243)
Q Consensus       165 I~~~~i~~~L~~~~~p-~-pDLlIRTsGe~RLSnFllwq~~y-sE-l~F~~~lWPdf~~~dl~~~i~~y~~r~RrfG  237 (243)
T Consensus       161 Id~~~~~~hl~T~~lpf~n~DLLIRTSGe~RiSnFLLWQ~~y~Aerlyf~D~LWPdF~~~~f~~~~~~f~~R~rrFg  237 (237)
T TIGR00055       161 IDEETLEKHLYTAGLPFPNVDLLIRTSGEERISNFLLWQISYKAERLYFTDILWPDFDRQDFELAILDFQFRHRRFG  237 (237)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf             32888876543127888886613545874025788999887607257753454899998999999999862110269