HHsearch alignment of GI: 254780775 and MMDB domain: 2d2r_A_
>2d2r_A (A:) Undecaprenyl pyrophosphate synthase; prenyltransferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A
Probab=100.00 E-value=0 Score=539.77 Aligned_cols=237 Identities=37% Similarity=0.672 Sum_probs=229.0
Q ss_pred HHCCCCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf 52068988269998488518999759987798999999999999999976986899972023365323012488889888
Q gi|254780775|r 4 SMMSSSPPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIK 83 (243)
Q Consensus 4 ~~~~~~~P~HIaiImDGNrRwAk~~gl~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~ 83 (243)
.+..+++|+|||||||||||||+++|++..+||+.|++++.+++.||.++||++||+|+||++||+|+++||+.||+++.
T Consensus 9 ~~~~~~iP~HiaiImDGnrR~A~~~~~~~~~gh~~g~~~l~~i~~wc~~~GI~~vtvY~fs~~n~~r~~~ev~~L~~l~~ 88 (245)
T 2d2r_A 9 SEKLDSTLKHLAIIMDGNGRWAKLKNKARAYGHKKGVKTLKDITIWCANHKLECLTLYAFSTENWKRPKSEVDFLMKMLK 88 (245)
T ss_dssp -----CCCCEEEEECCCHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTTCSEEEEECC----------CHHHHHHHHH
T ss_pred HHHCCCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHCCCCHHHHHHHHHHHH
T ss_conf 12328999859996148699998879977799999999999999999877961899885202322663589999999999
Q ss_pred HHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 63100001000028326313874451000023589998742025431158972488157899877876436764896877
Q gi|254780775|r 84 SFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCSH 163 (243)
Q Consensus 84 ~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~l~~~~~~~~~~~~ 163 (243)
..+.+..+...+++++++++||++.+|++++..+.++++.|+++++++||+|++||||+||++|++++++++.++ ..++
T Consensus 89 ~~~~~~~~~~~~~~~~i~~~Gd~~~lp~~~~~~~~~~~~~t~~~~~~~vni~~~y~gr~eI~~a~r~l~~~~~~~-~~~~ 167 (245)
T 2d2r_A 89 KYLKDERSTYLDNNIRFRAIGDLEGFSKELRDTILQLENDTRHFKDFTQVLALNYGSKNELSRAFKSLLESPPSN-ISLL 167 (245)
T ss_dssp HHHHHHHHHHHHTTCEEEEESCGGGSCHHHHHHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHSCCTT-GGGC
T ss_pred HHHHHHHHHHCCCCEEEEEEECCCCCCHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCC-CCCH
T ss_conf 887644421024775999862132222010001011234543444543224305671078999999998632001-5848
Q ss_pred HHHHHHHCCCCCCCCCCCCCEEEECCCCEECCCCCCCHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 811553101133678776526994578521336564011355388636878888989999999998630050588465
Q gi|254780775|r 164 DVDSSLIAKYLDTSDVPDPDLIIRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFGGLSK 241 (243)
Q Consensus 164 ~I~~~~i~~~L~~~~~p~pDLlIRTsGe~RLSnFllwq~~ysEl~F~~~lWPdf~~~dl~~~i~~y~~r~RrfG~~~~ 241 (243)
+|+++.+.++|+++..|||||+|||||++|||||||||++||||||++++||||++.||.+||.+||+|+|||||++.
T Consensus 168 ~i~~~~i~~~l~~~~~P~pDLlIrtgg~~rls~Fl~WQ~~~tEi~f~~~~wp~f~~~~~~~~l~~y~~~~~r~Gk~~~ 245 (245)
T 2d2r_A 168 ESLENEISNRLDTRNLPEVDLLLRTGGEMRLSNFLLWQSSYAELFFTPILWPDFTPKDLENIISDFYKRVRKFGELKA 245 (245)
T ss_dssp SCCHHHHHTTSTTTTSCCCSEEEECSSCCCCTTSSTTTTTTCEEEECCSCGGGCCHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 777567887534567889638995689731556133402245699778887659999999999999860166899889