Query gi|254780775|ref|YP_003065188.1| undecaprenyl diphosphate synthase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 243 No_of_seqs 140 out of 2926 Neff 6.6 Searched_HMMs 33803 Date Wed Jun 1 14:15:41 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780775.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1ueh_A Undecaprenyl pyrophosp 100.0 0 0 553.6 22.9 240 3-242 10-249 (253) 2 >2vg3_A Undecaprenyl pyrophosp 100.0 0 0 550.7 23.1 237 3-239 48-284 (284) 3 >1f75_A Undecaprenyl pyrophosp 100.0 0 0 545.9 21.3 236 4-239 14-249 (249) 4 >2d2r_A Undecaprenyl pyrophosp 100.0 0 0 539.8 20.3 237 4-241 9-245 (245) 5 >2vg0_A Short-chain Z-isopreny 100.0 0 0 521.6 22.9 222 9-232 1-227 (227) 6 >1a0c_A Xylose isomerase; keto 89.4 1.2 3.5E-05 24.9 6.0 67 36-102 162-228 (438) 7 >1xla_A D-xylose isomerase; is 89.3 1.2 3.7E-05 24.8 6.1 69 34-102 109-177 (394) 8 >1i60_A IOLI protein; beta bar 88.8 1.8 5.4E-05 23.7 6.6 126 22-151 52-192 (278) 9 >3kws_A Putative sugar isomera 88.6 2 5.9E-05 23.5 7.1 121 33-154 96-219 (287) 10 >2hk0_A D-psicose 3-epimerase; 87.1 2.5 7.3E-05 22.9 6.8 119 36-154 102-224 (309) 11 >3cqj_A L-ribulose-5-phosphate 86.2 2.7 8.1E-05 22.6 6.3 28 35-62 102-129 (295) 12 >1bxb_A Xylose isomerase; xylo 84.5 3.3 9.8E-05 22.1 6.5 83 21-103 74-178 (387) 13 >2qw5_A Xylose isomerase-like 83.0 2.4 7.1E-05 23.0 4.8 120 35-155 103-238 (335) 14 >3b4u_A Dihydrodipicolinate sy 82.5 4 0.00012 21.5 8.1 105 40-156 23-130 (228) 15 >3ktc_A Xylose isomerase; puta 81.9 4.2 0.00012 21.4 6.1 70 33-102 99-168 (275) 16 >1xim_A D-xylose isomerase; is 81.6 3.3 9.6E-05 22.1 5.1 81 22-102 75-177 (393) 17 >1xky_A Dihydrodipicolinate sy 79.5 5 0.00015 20.9 9.8 104 40-155 32-137 (219) 18 >2rfg_A Dihydrodipicolinate sy 79.2 5.1 0.00015 20.9 8.8 105 40-156 20-126 (243) 19 >1muw_A Xylose isomerase; atom 76.9 6 0.00018 20.4 6.6 70 34-103 109-178 (386) 20 >3cny_A Inositol catabolism pr 76.2 6.2 0.00018 20.3 7.1 83 21-103 60-160 (301) 21 >3e96_A Dihydrodipicolinate sy 76.1 6.3 0.00019 20.3 7.5 104 40-156 32-137 (217) 22 >3daq_A DHDPS, dihydrodipicoli 75.4 6.6 0.00019 20.2 10.3 105 40-156 22-128 (229) 23 >2vc6_A MOSA, dihydrodipicolin 75.0 6.7 0.0002 20.1 9.1 104 40-155 20-125 (236) 24 >2yxg_A DHDPS, dihydrodipicoli 73.9 7.1 0.00021 19.9 9.7 104 40-155 20-125 (289) 25 >2wkj_A N-acetylneuraminate ly 72.5 7.7 0.00023 19.7 10.2 105 40-156 31-137 (218) 26 >3d0c_A Dihydrodipicolinate sy 72.0 7.9 0.00023 19.6 7.6 104 40-156 32-137 (217) 27 >3dx5_A Uncharacterized protei 71.9 8 0.00024 19.6 5.7 68 33-104 76-143 (286) 28 >2g0w_A LMO2234 protein; 16411 70.9 4.8 0.00014 21.0 3.5 21 43-63 70-90 (296) 29 >3h5d_A DHDPS, dihydrodipicoli 70.0 8.7 0.00026 19.4 8.6 104 40-155 27-133 (214) 30 >2zvr_A Uncharacterized protei 69.4 9 0.00027 19.3 5.2 22 41-62 41-62 (290) 31 >1k77_A EC1530, hypothetical p 66.8 10 0.0003 19.0 6.6 63 36-102 80-142 (246) 32 >1xp3_A Endonuclease IV; NFO, 66.0 11 0.00031 18.9 8.2 129 22-154 64-210 (307) 33 >2ehh_A DHDPS, dihydrodipicoli 66.0 11 0.00031 18.9 9.7 104 40-155 20-125 (294) 34 >1o5k_A DHDPS, dihydrodipicoli 65.4 11 0.00032 18.8 9.7 104 40-155 32-137 (306) 35 >1xxx_A DHDPS, dihydrodipicoli 64.5 11 0.00033 18.7 9.6 104 40-155 34-139 (219) 36 >2v9d_A YAGE; dihydrodipicolin 64.2 11 0.00034 18.6 9.2 104 40-155 51-156 (278) 37 >3itv_A L-rhamnose isomerase; 64.1 11 0.00034 18.6 5.9 34 36-69 104-137 (281) 38 >3ju2_A Uncharacterized protei 63.4 12 0.00035 18.5 6.3 115 34-151 77-196 (284) 39 >3cpr_A Dihydrodipicolinate sy 61.3 13 0.00038 18.3 10.0 103 40-155 36-141 (221) 40 >3eb2_A Putative dihydrodipico 58.4 14 0.00042 18.0 7.6 105 40-156 24-130 (245) 41 >1f6k_A N-acetylneuraminate ly 58.2 14 0.00043 18.0 10.3 105 40-156 23-130 (293) 42 >2j6v_A UV endonuclease, UVDE; 57.7 15 0.00044 17.9 7.9 110 36-148 56-179 (301) 43 >2ojp_A DHDPS, dihydrodipicoli 56.2 16 0.00046 17.8 9.7 104 40-155 21-126 (292) 44 >3bi8_A Dihydrodipicolinate sy 53.3 17 0.00051 17.5 9.9 104 40-155 21-126 (291) 45 >1pvv_A Otcase, ornithine carb 53.2 13 0.0004 18.2 3.1 90 96-203 2-102 (128) 46 >1zq6_A Otcase, ornithine carb 52.1 13 0.00037 18.3 2.9 90 96-203 6-112 (137) 47 >2qul_A D-tagatose 3-epimerase 50.6 19 0.00057 17.2 6.1 120 34-154 81-206 (290) 48 >1qtw_A Endonuclease IV; DNA r 44.5 24 0.0007 16.6 10.8 79 22-104 53-148 (285) 49 >3fkr_A L-2-keto-3-deoxyarabon 44.4 24 0.00071 16.6 8.9 104 40-155 28-136 (309) 50 >3flu_A DHDPS, dihydrodipicoli 40.3 28 0.00082 16.2 9.9 104 40-155 27-132 (297) 51 >1duv_G Octase-1, ornithine tr 39.1 24 0.00072 16.5 2.7 90 96-203 2-104 (126) 52 >1oth_A Protein (ornithine tra 38.2 16 0.00048 17.6 1.7 90 96-203 2-102 (128) 53 >3dz1_A Dihydrodipicolinate sy 36.5 32 0.00093 15.8 9.2 103 40-155 28-131 (313) 54 >2v1l_A Hypothetical protein; 36.3 32 0.00094 15.8 4.3 35 176-217 54-90 (148) 55 >2eja_A URO-D, UPD, uroporphyr 35.9 32 0.00096 15.8 6.4 25 131-155 278-302 (338) 56 >2ob5_A AGR_C_3656P, hypotheti 35.1 26 0.00077 16.3 2.3 21 180-200 126-146 (153) 57 >1vk1_A Conserved hypothetical 34.5 13 0.00037 18.4 0.6 18 137-154 60-77 (108) 58 >1vlv_A Otcase, ornithine carb 34.5 34 0.001 15.6 3.1 90 96-203 2-103 (130) 59 >2wqp_A Polysialic acid capsul 32.5 28 0.00083 16.1 2.1 134 95-241 122-276 (276) 60 >2vqe_K 30S ribosomal protein 32.2 37 0.0011 15.4 3.5 64 32-112 54-117 (129) 61 >1dxh_A Ornithine carbamoyltra 31.7 35 0.001 15.6 2.5 90 96-203 2-104 (122) 62 >2r8w_A AGR_C_1641P; APC7498, 31.3 38 0.0011 15.3 8.6 104 40-155 54-159 (280) 63 >2dzd_A Pyruvate carboxylase; 30.7 39 0.0012 15.2 3.0 21 41-61 16-36 (110) 64 >3c8y_A Iron hydrogenase 1; di 30.7 10 0.00031 18.9 -0.4 36 121-161 124-159 (174) 65 >2i6u_A Otcase, ornithine carb 30.6 39 0.0012 15.2 4.6 90 96-203 2-103 (129) 66 >1j93_A UROD, uroporphyrinogen 29.9 40 0.0012 15.1 6.8 23 136-158 300-322 (353) 67 >2nuw_A 2-keto-3-deoxygluconat 28.0 44 0.0013 14.9 8.7 101 40-155 19-122 (288) 68 >1mio_B Nitrogenase molybdenum 27.1 45 0.0013 14.8 3.2 64 129-195 26-90 (109) 69 >1ulz_A Pyruvate carboxylase N 26.5 46 0.0014 14.8 3.3 21 41-61 12-32 (104) 70 >3hbl_A Pyruvate carboxylase; 25.0 49 0.0015 14.6 3.4 21 41-61 14-34 (107) 71 >2w70_A Biotin carboxylase; li 24.5 50 0.0015 14.5 3.2 21 41-61 12-32 (105) 72 >2eyq_A TRCF, transcription-re 24.4 51 0.0015 14.5 6.1 92 66-157 53-149 (153) 73 >1hfe_L Protein (Fe-only hydro 24.3 21 0.00063 16.9 0.3 37 121-162 127-163 (214) 74 >3l23_A Sugar phosphate isomer 24.2 51 0.0015 14.5 4.2 22 42-63 30-51 (303) 75 >2wcv_A L-fucose mutarotase; F 24.1 41 0.0012 15.1 1.8 57 137-199 78-134 (140) 76 >2r1i_A GCN5-related N-acetylt 23.7 52 0.0015 14.4 5.0 16 215-230 107-122 (139) 77 >1dbf_A Protein (chorismate mu 23.7 44 0.0013 14.9 1.8 36 135-170 11-47 (115) 78 >1xho_A Chorismate mutase; sou 22.8 54 0.0016 14.3 2.4 38 133-170 38-76 (148) 79 >2zds_A Putative DNA-binding p 22.0 56 0.0017 14.2 13.6 72 33-104 103-180 (340) 80 >3g8r_A Probable spore coat po 21.6 58 0.0017 14.2 6.1 163 39-239 76-262 (264) 81 >1sqh_A Hypothetical protein C 21.3 52 0.0015 14.4 1.8 35 31-65 84-118 (130) 82 >1yx1_A Hypothetical protein P 21.2 59 0.0017 14.1 5.5 24 41-64 51-74 (264) 83 >1w3i_A EDA, 2-keto-3-deoxy gl 20.6 60 0.0018 14.0 9.7 101 40-155 19-122 (293) 84 >2qf7_A Pyruvate carboxylase p 20.5 61 0.0018 14.0 3.4 21 41-61 24-44 (124) 85 >3ler_A DHDPS, dihydrodipicoli 20.2 61 0.0018 14.0 8.6 104 40-155 27-133 (301) No 1 >>1ueh_A Undecaprenyl pyrophosphate synthase; parallel alpha-beta, rossmann-like fold, transferase; HET: OXN; 1.73A {Escherichia coli} (A:) Probab=100.00 E-value=0 Score=553.62 Aligned_cols=240 Identities=37% Similarity=0.682 Sum_probs=235.4 Q ss_pred HHHCCCCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHH Q ss_conf 35206898826999848851899975998779899999999999999997698689997202336532301248888988 Q gi|254780775|r 3 ASMMSSSPPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLI 82 (243) Q Consensus 3 ~~~~~~~~P~HIaiImDGNrRwAk~~gl~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~ 82 (243) .....+++|+|||||||||||||+++|++...||+.|++++.+++.||.++||++||+|+||+|||+|+++||+.||+++ T Consensus 10 ~~~~l~kiP~HiavImdgnrR~A~~~g~~~~~gh~~g~~~l~~i~~wc~~~GI~~vsvY~~S~eN~~R~~~ev~~l~~l~ 89 (253) T 1ueh_A 10 SEKLPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELF 89 (253) T ss_dssp ---CCTTCCCEEEEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEC--------------CHHH T ss_pred HHHCCCCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHH T ss_conf 01268899988999534878999877997538999999999999999987797289986003631227605677899989 Q ss_pred HHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCH Q ss_conf 86310000100002832631387445100002358999874202543115897248815789987787643676489687 Q gi|254780775|r 83 KSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCS 162 (243) Q Consensus 83 ~~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~l~~~~~~~~~~~ 162 (243) ...+.+......+++++++++|+++.+|+++++.+.++++.|+++++++||+|++||||+||++|+++++++++.+.+++ T Consensus 90 ~~~~~~~~~~~~~~~~~i~~~G~~~~lp~~~~~~~~~~~~~t~~~~~~~vni~~~y~Gr~eIv~a~k~l~~~~~~~~~~~ 169 (253) T 1ueh_A 90 VWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQP 169 (253) T ss_dssp HHHHHHTHHHHHHTTCEEEEESCCTTSCHHHHHHHHHHHHHHTTCCSCEEEEEESCCHHHHHHHHHHHHHHHHHTTSCCG T ss_pred HHHHHHHHHHHHHHCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCH T ss_conf 99998888988761557998378313213556555567875268998259997455430689999999879998279897 Q ss_pred HHHHHHHHCCCCCCCCCCCCCEEEECCCCEECCCCCCCHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 78115531011336787765269945785213365640113553886368788889899999999986300505884656 Q gi|254780775|r 163 HDVDSSLIAKYLDTSDVPDPDLIIRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFGGLSKK 242 (243) Q Consensus 163 ~~I~~~~i~~~L~~~~~p~pDLlIRTsGe~RLSnFllwq~~ysEl~F~~~lWPdf~~~dl~~~i~~y~~r~RrfG~~~~~ 242 (243) ++|++++++++|++++.|||||+|||||++|||||||||++||||||++++||||++.||.+||.+|++|+|||||++++ T Consensus 170 ~~i~~~~i~~~L~~~~~PdpDLlIrtgg~~rLs~Fl~WQ~~~tEi~f~~~~wp~~~~~~f~~~l~~y~~~~~R~Gk~~~~ 249 (253) T 1ueh_A 170 DQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRERRFGGTEPG 249 (253) T ss_dssp GGCCHHHHHTTSTTTTSCCCCEEEECSSCCSCTTSSCGGGTTCEEEECCSCGGGCCHHHHHHHHHHHHTCC--------- T ss_pred HHHHHHHHCCCCCCCCCCCCCEEEECCCCEECCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 77410120001134677787569854894561466311314434897788986699999999999997524758999987 No 2 >>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, cell shape, cell division; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A (A:) Probab=100.00 E-value=0 Score=550.73 Aligned_cols=237 Identities=37% Similarity=0.706 Sum_probs=232.7 Q ss_pred HHHCCCCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHH Q ss_conf 35206898826999848851899975998779899999999999999997698689997202336532301248888988 Q gi|254780775|r 3 ASMMSSSPPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLI 82 (243) Q Consensus 3 ~~~~~~~~P~HIaiImDGNrRwAk~~gl~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~ 82 (243) ..+..+++|+|||||||||||||+++|++...||..|++++.+++.||.++||++||||+||+|||+|+++||+.||+++ T Consensus 48 ~~~~~~~iP~HiaiImDGnrR~A~~~~~~~~~g~~~g~~~~~~i~~wc~~~GI~~vTvY~~s~~n~~r~~~ev~~l~~l~ 127 (284) T 2vg3_A 48 PRIPADRLPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLMGFN 127 (284) T ss_dssp CCCCTTTSCSEEEEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEETTGGGSCHHHHHHHHHHH T ss_pred CCCCHHCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHHCCCHHHHHHHHHHH T ss_conf 98980018884899545878999877997558999999999999999998699789999840554046789999999898 Q ss_pred HHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCH Q ss_conf 86310000100002832631387445100002358999874202543115897248815789987787643676489687 Q gi|254780775|r 83 KSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCS 162 (243) Q Consensus 83 ~~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~l~~~~~~~~~~~ 162 (243) ..++.+..+.+.+++++++++||++.+|.++++.+.++|+.|++++++.||+|++||||+||++|+++++++++++.+++ T Consensus 128 ~~~~~~~~~~~~~~~~~i~~~G~~~~lp~~~~~~~~~~~~~T~~~~~~~lni~~~y~Gr~eI~~a~k~~~~~~~~~~~~~ 207 (284) T 2vg3_A 128 RDVVRRRRDTLKKLGVRIRWVGSRPRLWRSVINELAVAEEMTKSNDVITINYCVNYGGRTEITEATREIAREVAAGRLNP 207 (284) T ss_dssp HHHHHHHHHHHHHTTEEEEEESCCTTSCHHHHHHHHHHHHHHTTCCSEEEEEEEEECHHHHHHHHHHHHHHHHHTTSSCG T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCH T ss_conf 88664000122001321002576345872555555543210024655305888413542114566777655555410377 Q ss_pred HHHHHHHHCCCCCCCCCCCCCEEEECCCCEECCCCCCCHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCC Q ss_conf 78115531011336787765269945785213365640113553886368788889899999999986300505884 Q gi|254780775|r 163 HDVDSSLIAKYLDTSDVPDPDLIIRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFGGL 239 (243) Q Consensus 163 ~~I~~~~i~~~L~~~~~p~pDLlIRTsGe~RLSnFllwq~~ysEl~F~~~lWPdf~~~dl~~~i~~y~~r~RrfG~~ 239 (243) ++|+++.+.++|+++++|||||+||||||+|||||||||++||||||++++||||++.||.+||.+|++|+|||||+ T Consensus 208 ~di~~~~i~~~l~~~~~pdpDLlIrtsg~~rLs~FlpWQ~~~tEi~f~~~~wp~f~~~~f~~aL~~y~~r~rRfGK~ 284 (284) T 2vg3_A 208 ERITESTIARHLQRPDIPDVDLFLRTSGEQRSSNFMLWQAAYAEYIFQDKLWPDYDRRDLWAACEEYASRTRRFGSA 284 (284) T ss_dssp GGCCHHHHHHHSSSTTCCCCSEEEECTTCCCCTTTTTTTTTTCEEEECCSCGGGCCHHHHHHHHHHHHHSCCCSSCC T ss_pred HHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCC T ss_conf 66221212113467999997879976897304463012105615897788876599999999999997600668899 No 3 >>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} (A:) Probab=100.00 E-value=0 Score=545.92 Aligned_cols=236 Identities=44% Similarity=0.793 Sum_probs=232.1 Q ss_pred HHCCCCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHH Q ss_conf 52068988269998488518999759987798999999999999999976986899972023365323012488889888 Q gi|254780775|r 4 SMMSSSPPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIK 83 (243) Q Consensus 4 ~~~~~~~P~HIaiImDGNrRwAk~~gl~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~ 83 (243) .+..+++|+|||||||||||||+++|++..+||+.|++++.+++.||.++||++||||+||++||+||++|+++||+++. T Consensus 14 ~~~~~~lP~HiavI~DgnrR~a~~~~~~~~~g~~~g~~~l~~i~~wc~~~GI~~vSvY~~s~~n~~r~~~ev~~l~~l~~ 93 (249) T 1f75_A 14 NINAAQIPKHIAIIMDGNGRWAKQKKMPRIKGHYEGMQTVRKITRYASDLGVKYLTLYAFSTENWSRPKDEVNYLMKLPG 93 (249) T ss_dssp CCCSTTSCSEEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEC------------CGGGTHHH T ss_pred CCCCCCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHH T ss_conf 48722499889998349769999879976673999999999999999986998899997624334799899999999999 Q ss_pred HHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHH Q ss_conf 63100001000028326313874451000023589998742025431158972488157899877876436764896877 Q gi|254780775|r 84 SFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCSH 163 (243) Q Consensus 84 ~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~l~~~~~~~~~~~~ 163 (243) .++......+.+++++++++||++.+|+++++.+.++++.|.++++++||+|++||||+||++|++++++++.++.++++ T Consensus 94 ~~~~~~~~~~~~~~irl~~iG~~~~Lp~~~~~~i~~~~~~t~~~~~~~vni~~~y~gr~eI~~a~r~l~~~~~~~~~~~~ 173 (249) T 1f75_A 94 DFLNTFLPELIEKNVKVETIGFIDDLPDHTKKAVLEAKEKTKHNTGLTLVFALNYGGRKEIISAVQLIAERYKSGEISLD 173 (249) T ss_dssp HHHHHHHHHHHHTTCEEEEESCGGGSCHHHHHHHHHHHHTTTTCCSCEEEEECSCCHHHHHHHHHHHHHHHHHTTSSCGG T ss_pred HHHHHHHHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCHH T ss_conf 99999999998739769850783759999999999999850579962899984678889999999999999981899937 Q ss_pred HHHHHHHCCCCCCCCCCCCCEEEECCCCEECCCCCCCHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCC Q ss_conf 8115531011336787765269945785213365640113553886368788889899999999986300505884 Q gi|254780775|r 164 DVDSSLIAKYLDTSDVPDPDLIIRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFGGL 239 (243) Q Consensus 164 ~I~~~~i~~~L~~~~~p~pDLlIRTsGe~RLSnFllwq~~ysEl~F~~~lWPdf~~~dl~~~i~~y~~r~RrfG~~ 239 (243) +|+++.+.++|+++++|||||+||||||+|||||||||++||||||++++||||+..||.+||.+||+|+||||++ T Consensus 174 di~~~~i~~~L~~~~~P~pDLlIrtgg~~rls~Fl~WQ~~~tEi~f~~~~wp~f~~~~f~~~l~~y~~r~rR~G~~ 249 (249) T 1f75_A 174 EISETHFNEYLFTANMPDPELLIRTSGEERLSNFLIWQCSYSEFVFIDEFWPDFNEESLAQCISIYQNRHRRFGGL 249 (249) T ss_dssp GCSHHHHGGGSTTTTSCCCSEEEECTTCCBCCSCSTTTTTTCEEEECCSCGGGCCHHHHHHHHHHHTTC------- T ss_pred HCCHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCC T ss_conf 5689999842768898999889975896204587365562467997889966499999999999997178838899 No 4 >>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A (A:) Probab=100.00 E-value=0 Score=539.77 Aligned_cols=237 Identities=37% Similarity=0.672 Sum_probs=229.0 Q ss_pred HHCCCCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHH Q ss_conf 52068988269998488518999759987798999999999999999976986899972023365323012488889888 Q gi|254780775|r 4 SMMSSSPPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIK 83 (243) Q Consensus 4 ~~~~~~~P~HIaiImDGNrRwAk~~gl~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~ 83 (243) .+..+++|+|||||||||||||+++|++..+||+.|++++.+++.||.++||++||+|+||++||+|+++||+.||+++. T Consensus 9 ~~~~~~iP~HiaiImDGnrR~A~~~~~~~~~gh~~g~~~l~~i~~wc~~~GI~~vtvY~fs~~n~~r~~~ev~~L~~l~~ 88 (245) T 2d2r_A 9 SEKLDSTLKHLAIIMDGNGRWAKLKNKARAYGHKKGVKTLKDITIWCANHKLECLTLYAFSTENWKRPKSEVDFLMKMLK 88 (245) T ss_dssp -----CCCCEEEEECCCHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTTCSEEEEECC----------CHHHHHHHHH T ss_pred HHHCCCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHCCCCHHHHHHHHHHHH T ss_conf 12328999859996148699998879977799999999999999999877961899885202322663589999999999 Q ss_pred HHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHH Q ss_conf 63100001000028326313874451000023589998742025431158972488157899877876436764896877 Q gi|254780775|r 84 SFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCSH 163 (243) Q Consensus 84 ~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~l~~~~~~~~~~~~ 163 (243) ..+.+..+...+++++++++||++.+|++++..+.++++.|+++++++||+|++||||+||++|++++++++.++ ..++ T Consensus 89 ~~~~~~~~~~~~~~~~i~~~Gd~~~lp~~~~~~~~~~~~~t~~~~~~~vni~~~y~gr~eI~~a~r~l~~~~~~~-~~~~ 167 (245) T 2d2r_A 89 KYLKDERSTYLDNNIRFRAIGDLEGFSKELRDTILQLENDTRHFKDFTQVLALNYGSKNELSRAFKSLLESPPSN-ISLL 167 (245) T ss_dssp HHHHHHHHHHHHTTCEEEEESCGGGSCHHHHHHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHSCCTT-GGGC T ss_pred HHHHHHHHHHCCCCEEEEEEECCCCCCHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCC-CCCH T ss_conf 887644421024775999862132222010001011234543444543224305671078999999998632001-5848 Q ss_pred HHHHHHHCCCCCCCCCCCCCEEEECCCCEECCCCCCCHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 811553101133678776526994578521336564011355388636878888989999999998630050588465 Q gi|254780775|r 164 DVDSSLIAKYLDTSDVPDPDLIIRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFGGLSK 241 (243) Q Consensus 164 ~I~~~~i~~~L~~~~~p~pDLlIRTsGe~RLSnFllwq~~ysEl~F~~~lWPdf~~~dl~~~i~~y~~r~RrfG~~~~ 241 (243) +|+++.+.++|+++..|||||+|||||++|||||||||++||||||++++||||++.||.+||.+||+|+|||||++. T Consensus 168 ~i~~~~i~~~l~~~~~P~pDLlIrtgg~~rls~Fl~WQ~~~tEi~f~~~~wp~f~~~~~~~~l~~y~~~~~r~Gk~~~ 245 (245) T 2d2r_A 168 ESLENEISNRLDTRNLPEVDLLLRTGGEMRLSNFLLWQSSYAELFFTPILWPDFTPKDLENIISDFYKRVRKFGELKA 245 (245) T ss_dssp SCCHHHHHTTSTTTTSCCCSEEEECSSCCCCTTSSTTTTTTCEEEECCSCGGGCCHHHHHHHHHHHHHHCC------- T ss_pred HHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 777567887534567889638995689731556133402245699778887659999999999999860166899889 No 5 >>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A* (A:) Probab=100.00 E-value=0 Score=521.57 Aligned_cols=222 Identities=33% Similarity=0.545 Sum_probs=214.3 Q ss_pred CCCCEEEEECCCCHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 988269998488518999759987-7989999999999999999769868999720233653230124888898886310 Q gi|254780775|r 9 SPPDHIGIIMDGNGRWAAARGLPR-CAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLK 87 (243) Q Consensus 9 ~~P~HIaiImDGNrRwAk~~gl~~-~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~ 87 (243) ++|+|||||||||||||+++|++. ..||+.|++++.+++.||.++||++||+|+||+|||+||++||++||+++..++. T Consensus 1 ~iP~HiavI~DGNrR~A~~~~~~~~~~gh~~g~~~l~~ii~wc~~~GI~~vtvY~fs~en~~r~~~ev~~l~~l~~~~~~ 80 (227) T 2vg0_A 1 DLPRHIAVLCDGNRRWARSAGYDDVSYGYRMGAAKIAEMLRWCHEAGIELATVYLLSTENLQRDPDELAALIEIITDVVE 80 (227) T ss_dssp CCCSEEEEECCCHHHHHHHTTCSCTHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEETGGGGSCHHHHHHHHHHHHHHHH T ss_pred CCCCEEEEECCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCHHHHHHHHHHHHHHHH T ss_conf 99887999734868999877898567899999999999999999739888985401034540563777899999999999 Q ss_pred HCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCC----HH Q ss_conf 00010000283263138744510000235899987420254311589724881578998778764367648968----77 Q gi|254780775|r 88 KGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVC----SH 163 (243) Q Consensus 88 ~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~l~~~~~~~~~~----~~ 163 (243) .. ...+++++++++|+++.+|+++++.+.++++.|+++++++||||++||||+||++|++++++++.++.+. ++ T Consensus 81 ~~--~~~~~~iri~~~g~~~~lp~~~~~~~~~~~~~T~~~~~~~lni~~~y~gr~eI~~a~~~l~~~~~~~~l~~~~~~~ 158 (227) T 2vg0_A 81 EI--CAPANHWSVRTVGDLGLIGEEPARRLRGAVESTPEVASFHVNVAVGYGGRREIVDAVRALLSKELANGATAEELVD 158 (227) T ss_dssp HH--TCTTTCCEEEEESCGGGSCHHHHHHHHHHHHTSCSSCSCEEEEEEEECHHHHHHHHHHHHHHHHHHTTCCHHHHHH T ss_pred HH--HHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHC T ss_conf 98--8754123440673030211456666666654301346640799971597389999999988899856888145301 Q ss_pred HHHHHHHCCCCCCCCCCCCCEEEECCCCEECCCCCCCHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHC Q ss_conf 811553101133678776526994578521336564011355388636878888989999999998630 Q gi|254780775|r 164 DVDSSLIAKYLDTSDVPDPDLIIRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLR 232 (243) Q Consensus 164 ~I~~~~i~~~L~~~~~p~pDLlIRTsGe~RLSnFllwq~~ysEl~F~~~lWPdf~~~dl~~~i~~y~~r 232 (243) +|+++.+.++|++++.|||||+||||||+|||||||||++||||||++++||||+..||.+||.+||+| T Consensus 159 ~I~~~~i~~~L~~~~~P~pDLlIRtsge~rlS~FLpWQ~~~tEi~f~~~~Wp~f~~~~f~~al~~Y~~R 227 (227) T 2vg0_A 159 AVTVEGISENLYTSGQPDPDLVIRTSGEQRLSGFLLWQSAYSEMWFTEAHWPAFRHVDFLRALRDYSAR 227 (227) T ss_dssp HCCHHHHHHHSTTTTSCCCSEEEECTTCCCCTTTTTTTTTTCEEEECSSCGGGCCHHHHHHHHHHHHHC T ss_pred CCCHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCC T ss_conf 267999988604689987535872488502015431111555799778888779999999999998569 No 6 >>1a0c_A Xylose isomerase; ketolisomerase, xylose metabolism, glucose-fructose interconversion, hydride transfer, alpha-beta barrel; 2.50A {Thermoanaerobacter thermosulfurogenes} (A:) Probab=89.44 E-value=1.2 Score=24.90 Aligned_cols=67 Identities=9% Similarity=0.014 Sum_probs=29.7 Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE Q ss_conf 9999999999999999769868999720233653230124888898886310000100002832631 Q gi|254780775|r 36 HRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRV 102 (243) Q Consensus 36 h~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~ 102 (243) .+...+.+++.++.|..+|.+.++++..+..--..........++.+.+.+.+..+...+.++++.+ T Consensus 162 r~~~~~~~~~~i~~a~~lG~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~i~~~a~~~g~~~~i 228 (438) T 1a0c_A 162 FAYSAAQVKKALEITKELGGENYVFWGGREGYETLLNTDMEFELDNFARFLHMAVDYAKEIGFEGQF 228 (438) T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEECCTTSEESCGGGCCHHHHHHHHHHHHHHHHHHHHHTTCCSEE T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEE T ss_conf 9999999999999999829988997788765567665899999999999999999987743877059 No 7 >>1xla_A D-xylose isomerase; isomerase(intramolecular oxidoreductse); 2.30A {Arthrobacter SP} (A:) Probab=89.34 E-value=1.2 Score=24.79 Aligned_cols=69 Identities=10% Similarity=0.121 Sum_probs=36.5 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE Q ss_conf 989999999999999999769868999720233653230124888898886310000100002832631 Q gi|254780775|r 34 AGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRV 102 (243) Q Consensus 34 ~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~ 102 (243) .-.++..+.+++.++.|.++|++.+++..-+......+......-.+.+.+.+.+..+...+.|+++.+ T Consensus 109 ~~r~~~~~~~~~~i~~a~~lG~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~~~~ 177 (394) T 1xla_A 109 SIRRFALAKVLHNIDLAAEMGAETFVMWGGREGSEYDGSKDLAAALDRMREGVDTAAGYIKDKGYNLRI 177 (394) T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEEEECCTTCEESSGGGCCHHHHHHHHHHHHHHHHHHHHHHTCCCEE T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEE T ss_conf 999999999999999999968982687889886667776699999999999999999999862988449 No 8 >>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} (A:) Probab=88.83 E-value=1.8 Score=23.71 Aligned_cols=126 Identities=12% Similarity=0.067 Sum_probs=64.2 Q ss_pred HHHHHHCCCCH-------------HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 18999759987-------------79899999999999999997698689997202336532301248888988863100 Q gi|254780775|r 22 GRWAAARGLPR-------------CAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKK 88 (243) Q Consensus 22 rRwAk~~gl~~-------------~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~ 88 (243) +++++++|+.. ........+.+.+.++.|..+|.+++.+..-.........+..+. +.+.+.+ T Consensus 52 ~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg~~~i~~~~~~~~~~~~~~~~~~~----~~~~l~~ 127 (278) T 1i60_A 52 AEYFQTHHIKPLALNALVFFNNRDEKGHNEIITEFKGXXETCKTLGVKYVVAVPLVTEQKIVKEEIKKS----SVDVLTE 127 (278) T ss_dssp HHHHHTSSCEEEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHHHTCCEEEEECCBCSSCCCHHHHHHH----HHHHHHH T ss_pred HHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHH----HHHHHHH T ss_conf 999998199389996777778999899999999999999999982939899926988777787999999----9999999 Q ss_pred CCCCCCCCCCEEEE--CCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHH Q ss_conf 00100002832631--3874451000023589998742025431158972488157899877876 Q gi|254780775|r 89 GFYSLKKNNIKVRV--IGNRLSLDDDILCVLKEAEDQTRLNTGLNLFIAFNYSSRDEISRAIKNI 151 (243) Q Consensus 89 ~~~~~~~~~iki~~--iGd~~~lp~~i~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~l 151 (243) ..+.+.++|+++.+ .+..........+...-++.....+-++.+-+.=.|-...++..+++.+ T Consensus 128 ~~~~a~~~Gv~l~~E~~~~~~~~~~~~~~~~~li~~~~~~~~g~~~D~~h~~~~g~~~~~~~~~~ 192 (278) T 1i60_A 128 LSDIAEPYGVKIALEFVGHPQCTVNTFEQAYEIVNTVNRDNVGLVLDSFHFHAXGSNIESLKQAD 192 (278) T ss_dssp HHHHHGGGTCEEEEECCCCTTBSSCSHHHHHHHHHHHCCTTEEEEEEHHHHHHTTCCHHHHHTSC T ss_pred HHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEECHHHHHHCCCCHHHHHHHH T ss_conf 99999974998999835777555689999999998511663789854178886499999999860 No 9 >>3kws_A Putative sugar isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503} (A:) Probab=88.64 E-value=2 Score=23.47 Aligned_cols=121 Identities=11% Similarity=-0.076 Sum_probs=67.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE---CCCCCCC Q ss_conf 7989999999999999999769868999720233653230124888898886310000100002832631---3874451 Q gi|254780775|r 33 CAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRV---IGNRLSL 109 (243) Q Consensus 33 ~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~---iGd~~~l 109 (243) .....+-.+.+.+.++.|..+|.+++++.+........... -...+.-+.+.+.+..+.+.+.|+++.+ -+....+ T Consensus 96 ~~~~~~~~~~~~~~~~~a~~lga~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~a~~~gv~l~~e~~~~~~~~~ 174 (287) T 3kws_A 96 PAIRKECXDTXKEIIAAAGELGSTGVIIVPAFNGQVPALPH-TXETRDFLCEQFNEXGTFAAQHGTSVIFEPLNRKECFY 174 (287) T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSEEEECSCCTTCCSBCCS-SHHHHHHHHHHHHHHHHHHHHTTCCEEECCCCTTTCSS T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEE T ss_conf 99999999999999999998099847751455577888878-89999999999999999999709879999667768801 Q ss_pred CCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHH Q ss_conf 000023589998742025431158972488157899877876436 Q gi|254780775|r 110 DDDILCVLKEAEDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQD 154 (243) Q Consensus 110 p~~i~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~l~~~ 154 (243) .........-++.....+-++.+.++=.+-...+..+.++.+... T Consensus 175 ~~~~~~~~~~~~~~~~~~~gl~~D~~h~~~~~~~~~~~~~~~~~~ 219 (287) T 3kws_A 175 LRQVADAASLCRDINNPGVRCXGDFWHXTWEETSDXGAFISGGEY 219 (287) T ss_dssp CCCHHHHHHHHHHHCCTTEEEEEEHHHHHHHCSCHHHHHHHHGGG T ss_pred ECCHHHHHHHHHHHHCCCCCCEECHHHHHHHHCCHHHHHHHHCCE T ss_conf 157898888899874036760111477778613408899850672 No 10 >>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A* (A:) Probab=87.14 E-value=2.5 Score=22.89 Aligned_cols=119 Identities=10% Similarity=-0.074 Sum_probs=60.3 Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHH-HHHHHHHHHHHHHHHCCCCCCCCCCEEEECC---CCCCCCC Q ss_conf 99999999999999997698689997202336532301-2488889888631000010000283263138---7445100 Q gi|254780775|r 36 HRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVS-EISELVKLIKSFLKKGFYSLKKNNIKVRVIG---NRLSLDD 111 (243) Q Consensus 36 h~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~-Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iG---d~~~lp~ 111 (243) ...-.+.+.+.++.|..+|++.+++..-...++.++.. ..+..++-+.+.+....+...+.|+++.+=- ....+.. T Consensus 102 ~~~~~~~~~~~i~~a~~lg~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~~E~~~~~~~~~~~ 181 (309) T 2hk0_A 102 RAAGKAFFERTLSNVAKLDIHTIGGALHSYWPIDYSQPVDKAGDYARGVEGINGIADFANDLGINLCIEVLNRFENHVLN 181 (309) T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEECTTSCSSCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCTTTCSSCC T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC T ss_conf 99999999999999998389989854523668767888789999999999999999877640443002567765555669 Q ss_pred CCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHH Q ss_conf 0023589998742025431158972488157899877876436 Q gi|254780775|r 112 DILCVLKEAEDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQD 154 (243) Q Consensus 112 ~i~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~l~~~ 154 (243) .......-++.....+-++.+.++=.+-...++.++++++... T Consensus 182 ~~~~~~~l~~~~~~~~~~~~~D~~h~~~~~~~~~~~i~~~~~~ 224 (309) T 2hk0_A 182 TAAEGVAFVKDVGKNNVKVXLDTFHXNIEEDSFGDAIRTAGPL 224 (309) T ss_dssp SHHHHHHHHHHHTCTTEEEEEEHHHHHHHCSCHHHHHHHHGGG T ss_pred CHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCHHHHHHHHHCE T ss_conf 8999988888624875321244057887499999999872183 No 11 >>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif, structural genomics; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A (A:) Probab=86.24 E-value=2.7 Score=22.59 Aligned_cols=28 Identities=21% Similarity=0.482 Sum_probs=12.5 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 8999999999999999976986899972 Q gi|254780775|r 35 GHRKGIEVFNEIVAAAAEVGIKNLTIFA 62 (243) Q Consensus 35 Gh~~G~~~l~~ii~~~~~~gI~~lTvya 62 (243) ...+..+.+.+.++.|..+|.++++++. T Consensus 102 ~~~~~~~~~~~~i~~a~~lg~~~i~~~~ 129 (295) T 3cqj_A 102 VRAQGLEIMRKAIQFAQDVGIRVIQLAG 129 (295) T ss_dssp HHHHHHHHHHHHHHHHHHHTCCEEEECC T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEC T ss_conf 9999999999999999864999899947 No 12 >>1bxb_A Xylose isomerase; xylose metabolism; 2.20A {Thermus thermophilus} (A:) Probab=84.47 E-value=3.3 Score=22.06 Aligned_cols=83 Identities=10% Similarity=-0.025 Sum_probs=52.2 Q ss_pred CHHHHHHCCCCHH----------------------HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHH Q ss_conf 5189997599877----------------------989999999999999999769868999720233653230124888 Q gi|254780775|r 21 NGRWAAARGLPRC----------------------AGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISEL 78 (243) Q Consensus 21 NrRwAk~~gl~~~----------------------~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L 78 (243) -++|+++.|+... .-+.+..+.+++.++.|..+|.+.+++..-+...-..+......- T Consensus 74 ~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~~i~~a~~lG~~~~~~~~g~~~~~~~~~~~~~~~ 153 (387) T 1bxb_A 74 FKKALDETGLKVPMVTANLFSDPAFKDGAFTSPDPWVRAYALRKSLETMDLGAELGAEIYVVWPGREGAEVEATGKARKV 153 (387) T ss_dssp HHHHHHHHTCBCCEEECCCSSSGGGGGCSTTCSSHHHHHHHHHHHHHHHHHHHHHTCCEEEECCTTCEESCGGGCGGGTH T ss_pred HHHHHHCCCCCEEEECCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHH T ss_conf 99986406873001155434576653465358988999999999999999999839996997678776677630579999 Q ss_pred HHHHHHHHHHCCCCCCCCCCEEEEC Q ss_conf 8988863100001000028326313 Q gi|254780775|r 79 VKLIKSFLKKGFYSLKKNNIKVRVI 103 (243) Q Consensus 79 ~~l~~~~l~~~~~~~~~~~iki~~i 103 (243) .+.+.+.+....+...+.++++.+- T Consensus 154 ~~~~~~~l~~i~~~a~~~g~~~~~e 178 (387) T 1bxb_A 154 WDWVREALNFMAAYAEDQGYGYRFA 178 (387) T ss_dssp HHHHHHHHHHHHHHHHHHTCCCEEE T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEE T ss_conf 9999999999999777518883799 No 13 >>2qw5_A Xylose isomerase-like TIM barrel; YP_324688.1, putative sugar phosphate isomerase/epimerase, structural genomics; 1.78A {Anabaena variabilis atcc 29413} (A:) Probab=83.01 E-value=2.4 Score=22.96 Aligned_cols=120 Identities=8% Similarity=-0.092 Sum_probs=65.2 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC------------CCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE Q ss_conf 89999999999999999769868999720233653------------230124888898886310000100002832631 Q gi|254780775|r 35 GHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWR------------RPVSEISELVKLIKSFLKKGFYSLKKNNIKVRV 102 (243) Q Consensus 35 Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~------------R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~ 102 (243) -..+..+.+.+.++.|..+|++++.+.+....... .+..........+.+.+.+..+...+.|+++.+ T Consensus 103 ~r~~~~~~~~~~~~~a~~lG~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~l~~ 182 (335) T 2qw5_A 103 QRQEALEYLKSRVDITAALGGEIXXGPIVIPYGVFPTTDFNEPIWSDELQEHLKVRYANAQPILDKLGEYAEIKKVKLAI 182 (335) T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEEEECCSSCTTCCCBCTTCCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEE T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEE T ss_conf 99999999999999988737664521345476757777666544432210049999999999999999998756776775 Q ss_pred CC---CCCCCCCCCHHHHHHHHHHH-CCCCCCEEEEEECCCHHHHHHHHHHHHHHHH Q ss_conf 38---74451000023589998742-0254311589724881578998778764367 Q gi|254780775|r 103 IG---NRLSLDDDILCVLKEAEDQT-RLNTGLNLFIAFNYSSRDEISRAIKNIFQDI 155 (243) Q Consensus 103 iG---d~~~lp~~i~~~i~~~e~~T-~~n~~~~Lnia~~Yggr~EI~~A~k~l~~~~ 155 (243) == ....+.....+. ..+.+.+ ..+-++.+.++=.+-...+...+++.+...+ T Consensus 183 E~~~~~~~~~~~~~~~~-~~l~~~v~~~~~~i~~D~~h~~~~~~d~~~~i~~~~~~i 238 (335) T 2qw5_A 183 EPITHWETPGPNKLSQL-IEFLKGVKSKQVGVVIDSAHEILDGEGPEIFKTQVEYLA 238 (335) T ss_dssp CCCCTTTCSSCCSHHHH-HHHHTTCCCTTEEEEEEHHHHHHHCCCHHHHHHHHHHHH T ss_pred ECCCCCHHHHHHHHHHH-HHHHHHCCCCCCEEEECHHHHHHCCCCHHHHHHHHHHHH T ss_conf 03532045554347889-999885069875499706888873898899998789998 No 14 >>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MCSG, protein structure initiative; 1.20A {Agrobacterium tumefaciens str} (A:1-228) Probab=82.46 E-value=4 Score=21.55 Aligned_cols=105 Identities=12% Similarity=0.071 Sum_probs=67.5 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHH Q ss_conf 99999999999976986899972023365323012488889888631000010000283263138744510000235899 Q gi|254780775|r 40 IEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKE 119 (243) Q Consensus 40 ~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~ 119 (243) .+.+.+.++|+.+.|+..+.+.+-+-|.+.-+.+|...+.+...+......+-+ +- +| ...+.+.++. T Consensus 23 ~~~~~~~i~~l~~~G~~gi~v~G~tGE~~~Ls~~Er~~v~~~~~~~~~~~~~vi------~g-v~-----~~~~~~~i~~ 90 (228) T 3b4u_A 23 IDAMIAHARRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGIAPSRIV------TG-VL-----VDSIEDAADQ 90 (228) T ss_dssp HHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTCCGGGEE------EE-EC-----CSSHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHHHHCCCCCCCC------CC-CC-----CCCHHHHHHH T ss_conf 999999999999779999997921656545899999999887344213342234------57-65-----5546888887 Q ss_pred HHHHHCCCCCCEEEEE---ECCCHHHHHHHHHHHHHHHHH Q ss_conf 9874202543115897---248815789987787643676 Q gi|254780775|r 120 AEDQTRLNTGLNLFIA---FNYSSRDEISRAIKNIFQDIE 156 (243) Q Consensus 120 ~e~~T~~n~~~~Lnia---~~Yggr~EI~~A~k~l~~~~~ 156 (243) +...-+..-.-.+-+. +.+.++++|.+-.+.+++.+. T Consensus 91 a~~a~~~Gad~~l~~~P~~~~~~~~~~i~~~~~~i~~a~~ 130 (228) T 3b4u_A 91 SAEALNAGARNILLAPPSYFKNVSDDGLFAWFSAVFSKIG 130 (228) T ss_dssp HHHHHHTTCSEEEECCCCSSCSCCHHHHHHHHHHHHHHHC T ss_pred HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC T ss_conf 8888763234543346854577057789999999986412 No 15 >>3ktc_A Xylose isomerase; putative sugar isomerase, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.54A {Pectobacterium atrosepticum SCRI1043} (A:1-275) Probab=81.89 E-value=4.2 Score=21.41 Aligned_cols=70 Identities=11% Similarity=-0.024 Sum_probs=46.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE Q ss_conf 7989999999999999999769868999720233653230124888898886310000100002832631 Q gi|254780775|r 33 CAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRV 102 (243) Q Consensus 33 ~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~ 102 (243) .+-.++-.+.+++.++.|..+|++.+.+.+-+.--...+........+.+.+.+++..+...++|+++-+ T Consensus 99 ~~~r~~~~~~~~~~i~~a~~lg~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~ 168 (275) T 3ktc_A 99 PAARAAAFELXHESAGIVRELGANYVKVWPGQDGWDYPFQVSHKNLWKLAVDGXRDLAGANPDVKFAIEY 168 (275) T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSEEEECCTTCEESSTTSSCHHHHHHHHHHHHHHHHHTCTTSEEEEEC T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEC T ss_conf 9999999999999999998639972798214677677865379999999999999999986405855302 No 16 >>1xim_A D-xylose isomerase; isomerase(intramolecular oxidoreductse); HET: XYL; 2.20A {Actinoplanes missouriensis} (A:) Probab=81.57 E-value=3.3 Score=22.11 Aligned_cols=81 Identities=15% Similarity=0.078 Sum_probs=47.3 Q ss_pred HHHHHHCCCCHH----------------------HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHH Q ss_conf 189997599877----------------------9899999999999999997698689997202336532301248888 Q gi|254780775|r 22 GRWAAARGLPRC----------------------AGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELV 79 (243) Q Consensus 22 rRwAk~~gl~~~----------------------~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~ 79 (243) ++|++++|+... .-.....+.+++.++.|..+|.+.+.+..-+...-..+......-. T Consensus 75 ~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~LG~~~~~~~~g~~~~~~~~~~~~~~~~ 154 (393) T 1xim_A 75 KKALDETGLIVPMVTTNLFTHPVFKDGGFTSNDRSVRRYAIRKVLRQMDLGAELGAKTLVLWGGREGAEYDSAKDVSAAL 154 (393) T ss_dssp HHHHHHHTCBCCEEECCCSSSGGGTTCSTTCSSHHHHHHHHHHHHHHHHHHHHHTCCEEEEECTTSEESSGGGCCHHHHH T ss_pred HHHHHHCCCCCEEEECCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHH T ss_conf 99998649801043044321255514887893999999999999999999999589816970787766687656899999 Q ss_pred HHHHHHHHHCCCCCCCCCCEEEE Q ss_conf 98886310000100002832631 Q gi|254780775|r 80 KLIKSFLKKGFYSLKKNNIKVRV 102 (243) Q Consensus 80 ~l~~~~l~~~~~~~~~~~iki~~ 102 (243) +.+.+.+....+...+.++.+.+ T Consensus 155 ~~~~~~l~~~~~~a~~~g~~~~~ 177 (393) T 1xim_A 155 DRYREALNLLAQYSEDRGYGLRF 177 (393) T ss_dssp HHHHHHHHHHHHHHHHHTCCCEE T ss_pred HHHHHHHHHHHHHHHHCCCCCEE T ss_conf 99999999999999861888169 No 17 >>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} (A:1-219) Probab=79.51 E-value=5 Score=20.91 Aligned_cols=104 Identities=13% Similarity=0.141 Sum_probs=71.6 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHH Q ss_conf 99999999999976986899972023365323012488889888631000010000283263138744510000235899 Q gi|254780775|r 40 IEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKE 119 (243) Q Consensus 40 ~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~ 119 (243) .+.+.+.++|+.+.|+.-|.+.+.+.|.|.=+.+|...+.+...+......+-+ --+| ...+.+.++. T Consensus 32 ~~~~~~~i~~l~~~Gv~gl~~~G~tgE~~~Ls~~Er~~l~~~~~~~~~~~~~vi-------~gv~-----~~st~~~i~~ 99 (219) T 1xky_A 32 FAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVI-------AGTG-----SNNTHASIDL 99 (219) T ss_dssp HHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEE-------EECC-----CSCHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHHHHHCCCCCEE-------EECC-----CCCHHHHHHH T ss_conf 999999999999779998997865320665969999998776887503557667-------5356-----4228999999 Q ss_pred HHHHHCCCCCCEEEEEECC--CHHHHHHHHHHHHHHHH Q ss_conf 9874202543115897248--81578998778764367 Q gi|254780775|r 120 AEDQTRLNTGLNLFIAFNY--SSRDEISRAIKNIFQDI 155 (243) Q Consensus 120 ~e~~T~~n~~~~Lnia~~Y--ggr~EI~~A~k~l~~~~ 155 (243) +....+..-...+.+.-.| .+.++|.+-.+.+++.+ T Consensus 100 a~~a~~~Gad~i~v~pp~~~~~~~~~i~~~~~~i~~a~ 137 (219) T 1xky_A 100 TKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAEST 137 (219) T ss_dssp HHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTC T ss_pred HHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCC T ss_conf 99999749999997799788989999999999996358 No 18 >>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase, lysine biosynthesis; 1.50A {Hahella chejuensis} (A:1-243) Probab=79.24 E-value=5.1 Score=20.85 Aligned_cols=105 Identities=13% Similarity=0.134 Sum_probs=70.0 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHH Q ss_conf 99999999999976986899972023365323012488889888631000010000283263138744510000235899 Q gi|254780775|r 40 IEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKE 119 (243) Q Consensus 40 ~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~ 119 (243) .+.+.+.++|+.+.|+.-+.+..-+.|.+.-+.+|...+.+...+......+-+ + |- ....+.+.++. T Consensus 20 ~~~~~~~i~~l~~~Gv~gi~v~Gt~GE~~~lt~~Er~~l~~~~~~~~~~~~~vi------~---gv---~~~~~~~~i~~ 87 (243) T 2rfg_A 20 EKALAGLVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQAQGRVPVI------A---GA---GSNNPVEAVRY 87 (243) T ss_dssp HHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBE------E---EC---CCSSHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHHHHCCCCCEEE------E---EC---CCCCHHHHHHH T ss_conf 999999999999779998996842656314899999999999999918984099------7---34---54469999999 Q ss_pred HHHHHCCCCCCEEEEEECC--CHHHHHHHHHHHHHHHHH Q ss_conf 9874202543115897248--815789987787643676 Q gi|254780775|r 120 AEDQTRLNTGLNLFIAFNY--SSRDEISRAIKNIFQDIE 156 (243) Q Consensus 120 ~e~~T~~n~~~~Lnia~~Y--ggr~EI~~A~k~l~~~~~ 156 (243) +...-+..-...+-+.-.| .+.+|+.+-.+.+++... T Consensus 88 a~~a~~~G~d~i~~~~P~~~~~~~~~i~~~~~~ia~a~~ 126 (243) T 2rfg_A 88 AQHAQQAGADAVLCVAGYYNRPSQEGLYQHFKMVHDAID 126 (243) T ss_dssp HHHHHHHTCSEEEECCCTTTCCCHHHHHHHHHHHHHHCS T ss_pred HHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCC T ss_conf 999998499976426877789899999999999975379 No 19 >>1muw_A Xylose isomerase; atomic resolution, disorder; 0.86A {Streptomyces olivochromogenes} (A:) Probab=76.91 E-value=6 Score=20.43 Aligned_cols=70 Identities=10% Similarity=0.031 Sum_probs=36.1 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEC Q ss_conf 9899999999999999997698689997202336532301248888988863100001000028326313 Q gi|254780775|r 34 AGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVI 103 (243) Q Consensus 34 ~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~i 103 (243) +-+.+..+.+++.++.|..+|++.+++..-+...-.-.......-...+.+.+.+..+...+.++++.+- T Consensus 109 ~~~~~~~~~~~~~i~~a~~lG~~~i~~~~g~~~~~~~~~~~~~~~~~~~~e~l~~i~~~a~~~g~~~~~e 178 (386) T 1muw_A 109 DVRRYALRKTIRNIDLAVELGAKTYVAWGGREGAESGAAKDVRVALDRMKEAFDLLGEYVTSQGYDIRFA 178 (386) T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSEEEECCTTCEESSTTSCCHHHHHHHHHHHHHHHHHHHHHHTCCCEEE T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEE T ss_conf 9999999999999999999499969974898876676657999999999999999999999729995799 No 20 >>3cny_A Inositol catabolism protein IOLE; NP_786806.1, xylose isomerase-like TIM barrel, structural genomics; 1.85A {Lactobacillus plantarum WCFS1} (A:) Probab=76.21 E-value=6.2 Score=20.31 Aligned_cols=83 Identities=13% Similarity=-0.043 Sum_probs=53.6 Q ss_pred CHHHHHHCCCCHH----------HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC-------CC-CCCHHHHHHHHHHH Q ss_conf 5189997599877----------989999999999999999769868999720233-------65-32301248888988 Q gi|254780775|r 21 NGRWAAARGLPRC----------AGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSIN-------NW-RRPVSEISELVKLI 82 (243) Q Consensus 21 NrRwAk~~gl~~~----------~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~e-------N~-~R~~~Ev~~L~~l~ 82 (243) -+++.++.|+... .......+.+.+.++.|..+|++.+.+.+-+.. .+ ...........+.+ T Consensus 60 ~~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (301) T 3cny_A 60 LNYELKLRNLEIAGQWFSSYIIRDGIEKASEAFEKHCQYLKAINAPVAVVSEQTYTIQRSDTANIFKDKPYFTDKEWDEV 139 (301) T ss_dssp HHHHHHHTTCEECEEEEEECHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECTTCCTTCSSCCTTTCCCCCCHHHHHHH T ss_pred HHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHH T ss_conf 99999980990014024665432002457788888999999840363555402444202556776677888889999999 Q ss_pred HHHHHHCCCCCCCCCCEEEEC Q ss_conf 863100001000028326313 Q gi|254780775|r 83 KSFLKKGFYSLKKNNIKVRVI 103 (243) Q Consensus 83 ~~~l~~~~~~~~~~~iki~~i 103 (243) .+.+.+..+...+.|+++.+= T Consensus 140 ~~~~~~~~~~a~~~gv~l~~E 160 (301) T 3cny_A 140 CKGLNHYGEIAAKYGLKVAYH 160 (301) T ss_dssp HHHHHHHHHHHHHTTCEEEEE T ss_pred HHHHHHHHHHHHHCCCCEEEE T ss_conf 999999999998659715885 No 21 >>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, , PSI-2, protein structure initiative; 1.80A {Bacillus clausii ksm-k16} (A:1-217) Probab=76.13 E-value=6.3 Score=20.29 Aligned_cols=104 Identities=10% Similarity=0.093 Sum_probs=70.0 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHH Q ss_conf 99999999999976986899972023365323012488889888631000010000283263138744510000235899 Q gi|254780775|r 40 IEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKE 119 (243) Q Consensus 40 ~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~ 119 (243) .+.+.+.++|+...|+.-+.+...+.|.+.-+.+|-..+++...+..... .-++|-...-..+..+.+.. T Consensus 32 ~~~~~~~i~~~~~~Gv~gi~v~G~tGE~~~Lt~~Er~~~i~~~~~~~~~~----------~~i~g~~~~~t~~~i~~a~~ 101 (217) T 3e96_A 32 WHHYKETVDRIVDNGIDVIVPCGNTSEFYALSLEEAKEEVRRTVEYVHGR----------ALVVAGIGYATSTAIELGNA 101 (217) T ss_dssp HHHHHHHHHHHHTTTCCEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTS----------SEEEEEECSSHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHHHHHCCC----------CEEEECCCCCHHHHHHHHHH T ss_conf 99999999999976999999684566621379999999999999982997----------32741443312467777777 Q ss_pred HHHHHCCCCCCEEEEEECCC--HHHHHHHHHHHHHHHHH Q ss_conf 98742025431158972488--15789987787643676 Q gi|254780775|r 120 AEDQTRLNTGLNLFIAFNYS--SRDEISRAIKNIFQDIE 156 (243) Q Consensus 120 ~e~~T~~n~~~~Lnia~~Yg--gr~EI~~A~k~l~~~~~ 156 (243) +++. .-.-.+.+.-.|. ++++|.+-.+.+++.+. T Consensus 102 a~~~---Ga~~~lv~~P~~~~~~~~~i~~~~~~i~~~~~ 137 (217) T 3e96_A 102 AKAA---GADAVMIHMPIHPYVTAGGVYAYFRDIIEALD 137 (217) T ss_dssp HHHH---TCSEEEECCCCCSCCCHHHHHHHHHHHHHHHT T ss_pred HHHC---CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC T ss_conf 7641---44312356874232106777889998876522 No 22 >>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino- acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; 1.45A {Staphylococcus aureus} PDB: 3di1_A 3di0_A (A:1-229) Probab=75.39 E-value=6.6 Score=20.17 Aligned_cols=105 Identities=12% Similarity=0.155 Sum_probs=72.1 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHH Q ss_conf 99999999999976986899972023365323012488889888631000010000283263138744510000235899 Q gi|254780775|r 40 IEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKE 119 (243) Q Consensus 40 ~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~ 119 (243) .+.+.+.++|+.+.||.-+.+.+.+-|.+.=+.+|...+++...+......+ |-+ |- ....+.+.+.. T Consensus 22 ~~~l~~~i~~~~~~Gv~gl~~~G~tGE~~~Lt~~Er~~~~~~~~~~~~~~~~--------ii~-gv---~~~s~~~~i~~ 89 (229) T 3daq_A 22 LEALKAHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVDKRVP--------VIA-GT---GTNDTEKSIQA 89 (229) T ss_dssp HHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSC--------EEE-EC---CCSCHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC--------EEE-CC---CCHHHHHHHHH T ss_conf 9999999999997699999978056440027899999997556775024475--------011-12---11137888899 Q ss_pred HHHHHCCCCCCEEEEEECCC--HHHHHHHHHHHHHHHHH Q ss_conf 98742025431158972488--15789987787643676 Q gi|254780775|r 120 AEDQTRLNTGLNLFIAFNYS--SRDEISRAIKNIFQDIE 156 (243) Q Consensus 120 ~e~~T~~n~~~~Lnia~~Yg--gr~EI~~A~k~l~~~~~ 156 (243) ++...+..-...+-+.-.|. +++++.+-.+.+++... T Consensus 90 a~~a~~~G~d~i~v~pP~~~~~~~~~i~~~~~~i~~a~~ 128 (229) T 3daq_A 90 SIQAKALGADAIMLITPYYNKTNQRGLVKHFEAIADAVK 128 (229) T ss_dssp HHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHC T ss_pred HHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCC T ss_conf 999996299828862021557999999999999974238 No 23 >>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, pyruvate, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} (A:1-236) Probab=74.97 E-value=6.7 Score=20.10 Aligned_cols=104 Identities=13% Similarity=0.054 Sum_probs=72.8 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHH Q ss_conf 99999999999976986899972023365323012488889888631000010000283263138744510000235899 Q gi|254780775|r 40 IEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKE 119 (243) Q Consensus 40 ~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~ 119 (243) .+.+.+.++++.+.||.-+.+.+-+-|.+.-+.+|...+++...+......+-+- -+| ...+.+.+.. T Consensus 20 ~~~~~~~~~~l~~~Gv~gi~~~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~ii~-------gv~-----~~s~~~~i~~ 87 (236) T 2vc6_A 20 EVALHDLVEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIKTANGRVPVIA-------GAG-----SNSTAEAIAF 87 (236) T ss_dssp HHHHHHHHHHHHHTTCSEEETTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEE-------ECC-----CSSHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHHHHCCCCCCEEE-------ECC-----CCCHHHHHHH T ss_conf 9999999999997799999975156314358999999999999987079861897-------468-----7406899999 Q ss_pred HHHHHCCCCCCEEEEEECC--CHHHHHHHHHHHHHHHH Q ss_conf 9874202543115897248--81578998778764367 Q gi|254780775|r 120 AEDQTRLNTGLNLFIAFNY--SSRDEISRAIKNIFQDI 155 (243) Q Consensus 120 ~e~~T~~n~~~~Lnia~~Y--ggr~EI~~A~k~l~~~~ 155 (243) ++...+..-...+.+.-.| .+.+|+++-.+.+++.+ T Consensus 88 a~~a~~~G~d~v~v~pP~~~~~~~~~i~~~~~~ia~a~ 125 (236) T 2vc6_A 88 VRHAQNAGADGVLIVSPYYNKPTQEGIYQHFKAIDAAS 125 (236) T ss_dssp HHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC T ss_pred HHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCC T ss_conf 99999769999998699888999999999999860145 No 24 >>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} (A:) Probab=73.95 E-value=7.1 Score=19.94 Aligned_cols=104 Identities=8% Similarity=0.066 Sum_probs=69.3 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHH Q ss_conf 99999999999976986899972023365323012488889888631000010000283263138744510000235899 Q gi|254780775|r 40 IEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKE 119 (243) Q Consensus 40 ~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~ 119 (243) .+.+.+.++|+.+.|+.-+.+...+.|.|.-+.+|-..+++...+......+-+ .|--+ ..+.+.+.. T Consensus 20 ~~~~~~~i~~l~~~Gv~gl~~~G~~gE~~~lt~~Er~~~~~~~~~~~~~~~~ii---------~g~~~---~s~~~ai~~ 87 (289) T 2yxg_A 20 FDGLEENINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVVNGRVQVI---------AGAGS---NCTEEAIEL 87 (289) T ss_dssp HHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEE---------EECCC---SSHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHHHHCCCCEEEE---------ECCCC---CHHHHHHHH T ss_conf 999999999999779998997854423665899999999999998607970699---------71574---019999999 Q ss_pred HHHHHCCCCCCEEEEEEC--CCHHHHHHHHHHHHHHHH Q ss_conf 987420254311589724--881578998778764367 Q gi|254780775|r 120 AEDQTRLNTGLNLFIAFN--YSSRDEISRAIKNIFQDI 155 (243) Q Consensus 120 ~e~~T~~n~~~~Lnia~~--Yggr~EI~~A~k~l~~~~ 155 (243) +...-+..-...+-+.-. --+.+||++-++.+++.+ T Consensus 88 a~~a~~~G~d~v~i~pP~~~~~s~~~i~~~~~~ia~a~ 125 (289) T 2yxg_A 88 SVFAEDVGADAVLSITPYYNKPTQEGLRKHFGKVAESI 125 (289) T ss_dssp HHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC T ss_pred HHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHC T ss_conf 99999779999998898788989999999999999827 No 25 >>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, cytoplasm, schiff base, carbohydrate metabolism; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 1hl2_A 1fdy_A 1fdz_A 1nal_1 (A:1-218) Probab=72.48 E-value=7.7 Score=19.72 Aligned_cols=105 Identities=12% Similarity=0.047 Sum_probs=71.5 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHH Q ss_conf 99999999999976986899972023365323012488889888631000010000283263138744510000235899 Q gi|254780775|r 40 IEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKE 119 (243) Q Consensus 40 ~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~ 119 (243) .+.+.+.++|+...|+.-|.+-..+.|-+.-+.+|...+++...+......+ +-+ |- -...+.+.+.. T Consensus 31 ~~~~~~~i~~~~~~G~~gi~~~G~tGE~~~Lt~~Er~~l~~~~~~~~~~~~~--------vi~-gv---~~~~t~~~i~~ 98 (218) T 2wkj_A 31 KASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIK--------LIA-HV---GCVSTAESQQL 98 (218) T ss_dssp HHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSE--------EEE-EC---CCSSHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHHHHHHCCCC--------EEE-CC---CCCHHHHHHHH T ss_conf 9999999999998699989977577542138999999999999998632331--------111-02---21102345677 Q ss_pred HHHHHCCCCCCEEEEEECC--CHHHHHHHHHHHHHHHHH Q ss_conf 9874202543115897248--815789987787643676 Q gi|254780775|r 120 AEDQTRLNTGLNLFIAFNY--SSRDEISRAIKNIFQDIE 156 (243) Q Consensus 120 ~e~~T~~n~~~~Lnia~~Y--ggr~EI~~A~k~l~~~~~ 156 (243) ++..-...-...+-+.-.| .+.+||.+-.+.+++++. T Consensus 99 a~~a~~~Gad~vlv~pP~~~~~~~~~i~~~~~~i~~a~~ 137 (218) T 2wkj_A 99 AASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSAD 137 (218) T ss_dssp HHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHT T ss_pred HHHHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHCCCC T ss_conf 899997599612014886467763679999998751477 No 26 >>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} (A:1-217) Probab=71.98 E-value=7.9 Score=19.65 Aligned_cols=104 Identities=7% Similarity=0.039 Sum_probs=68.1 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHH Q ss_conf 99999999999976986899972023365323012488889888631000010000283263138744510000235899 Q gi|254780775|r 40 IEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKE 119 (243) Q Consensus 40 ~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~ 119 (243) .+.+.+.++|+...|+.-+.+.+.+-|.|.-+.+|-..+.+...+...... + ++|-. ...+.+.++. T Consensus 32 ~~~~~~~i~~l~~~Gv~gi~v~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~-------~---i~~~~---~~st~~~ie~ 98 (217) T 3d0c_A 32 WKGLDDNVEFLLQNGIEVIVPNGNTGEFYALTIEEAKQVATRVTELVNGRA-------T---VVAGI---GYSVDTAIEL 98 (217) T ss_dssp HHHHHHHHHHHHHTTCSEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSS-------E---EEEEE---CSSHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHHHHHCCCC-------E---EEEEE---CCCHHHHHHH T ss_conf 999999999999769998996841537434899999999999999818996-------0---89762---7989999999 Q ss_pred HHHHHCCCCCCEEEEEECC--CHHHHHHHHHHHHHHHHH Q ss_conf 9874202543115897248--815789987787643676 Q gi|254780775|r 120 AEDQTRLNTGLNLFIAFNY--SSRDEISRAIKNIFQDIE 156 (243) Q Consensus 120 ~e~~T~~n~~~~Lnia~~Y--ggr~EI~~A~k~l~~~~~ 156 (243) ++..-...-...+.+.-.| -++++|.+-.+.+++... T Consensus 99 ~~~a~~~Ga~~vli~~P~~~~~~~~~i~~~~~~i~~a~~ 137 (217) T 3d0c_A 99 GKSAIDSGADCVXIHQPVHPYITDAGAVEYYRNIIEALD 137 (217) T ss_dssp HHHHHHTTCSEEEECCCCCSCCCHHHHHHHHHHHHHHSS T ss_pred HHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCC T ss_conf 999997599989973787899899999999999998569 No 27 >>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structural genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis} (A:) Probab=71.88 E-value=8 Score=19.63 Aligned_cols=68 Identities=16% Similarity=0.051 Sum_probs=35.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECC Q ss_conf 798999999999999999976986899972023365323012488889888631000010000283263138 Q gi|254780775|r 33 CAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIG 104 (243) Q Consensus 33 ~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iG 104 (243) ........+.+.+.++.|..+|.+++.+..-...--..+.+..+. +.+.+....+.+.+.|+++-+=. T Consensus 76 ~~~~~~~~~~~~~~i~~a~~lg~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~a~~~gi~l~~E~ 143 (286) T 3dx5_A 76 SADFEKTIEKCEQLAILANWFKTNKIRTFAGQKGSADFSQQERQE----YVNRIRXICELFAQHNXYVLLET 143 (286) T ss_dssp TSCHHHHHHHHHHHHHHHHHHTCCEEEECSCSSCGGGSCHHHHHH----HHHHHHHHHHHHHHTTCEEEEEC T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHH----HHHHHHHHHHHHHHCCCCEEECC T ss_conf 422899999999999999995999899656877777680999999----99999999999998597344315 No 28 >>2g0w_A LMO2234 protein; 16411704, structural genomics, PSI, protein structure initiative, joint center for structural genomics, JCSG; HET: MSE PG4; 1.70A {Listeria monocytogenes} (A:) Probab=70.90 E-value=4.8 Score=21.01 Aligned_cols=21 Identities=10% Similarity=-0.036 Sum_probs=9.6 Q ss_pred HHHHHHHHHHCCCCEEEEEEC Q ss_conf 999999999769868999720 Q gi|254780775|r 43 FNEIVAAAAEVGIKNLTIFAF 63 (243) Q Consensus 43 l~~ii~~~~~~gI~~lTvyaf 63 (243) +.++.+.+.+.|++..++.++ T Consensus 70 ~~~~~~~~~~~gl~i~~~~~~ 90 (296) T 2g0w_A 70 DEDXLRILDEHNXKVTEVEYI 90 (296) T ss_dssp HHHHHHHHHHTTCEEEEEECB T ss_pred HHHHHHHHHHCCCEEEEEECC T ss_conf 999999999639979998862 No 29 >>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino- acid biosynthesis, schiff base, cytoplasm, diaminopimelate biosynthesis; HET: MES; 1.99A {Streptococcus pneumoniae} (A:1-214) Probab=70.02 E-value=8.7 Score=19.37 Aligned_cols=104 Identities=9% Similarity=0.065 Sum_probs=70.3 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHH Q ss_conf 99999999999976986899972023365323012488889888631000010000283263138744510000235899 Q gi|254780775|r 40 IEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKE 119 (243) Q Consensus 40 ~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~ 119 (243) .+.+...++++.+.|+.-+.+-..+-|.|.-+.+|...+.+...+...... .+-+ |- ....+.+.++. T Consensus 27 ~~~~~~~i~~l~~~G~~gi~v~G~tGE~~~Lt~~Er~~l~~~~~~~~~~~~--------~vi~-g~---~~~~t~~~i~~ 94 (214) T 3h5d_A 27 FDAIPALIEHLLAHHTDGILLAGTTAESPTLTHDEELELFAAVQKVVNGRV--------PLIA-GV---GTNDTRDSIEF 94 (214) T ss_dssp TTHHHHHHHHHHHTTCCCEEESSTTTTGGGSCHHHHHHHHHHHHHHSCSSS--------CEEE-EC---CCSSHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHHHHHCCCC--------CEEE-EC---CCCCCHHHHHH T ss_conf 999999999999779998996852214524899999999999999736998--------6897-45---76420234567 Q ss_pred HHHHHCCCCCCEEEEEECC---CHHHHHHHHHHHHHHHH Q ss_conf 9874202543115897248---81578998778764367 Q gi|254780775|r 120 AEDQTRLNTGLNLFIAFNY---SSRDEISRAIKNIFQDI 155 (243) Q Consensus 120 ~e~~T~~n~~~~Lnia~~Y---ggr~EI~~A~k~l~~~~ 155 (243) +...-+....-.+-+.-.| -+.++|.+-.+.+++.. T Consensus 95 a~~a~~~g~~~~l~~~pp~~~~~~~~~i~~~~~~i~~~~ 133 (214) T 3h5d_A 95 VKEVAEFGGFAAGLAIVPYYNKPSQEGMYQHFKAIADAS 133 (214) T ss_dssp HHHHHHSCCCSEEEEECCCSSCCCHHHHHHHHHHHHHSC T ss_pred HHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCC T ss_conf 777776405561463388788999999999999997047 No 30 >>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3- epimerase, D-tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima} (A:) Probab=69.44 E-value=9 Score=19.30 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=9.5 Q ss_pred HHHHHHHHHHHHCCCCEEEEEE Q ss_conf 9999999999976986899972 Q gi|254780775|r 41 EVFNEIVAAAAEVGIKNLTIFA 62 (243) Q Consensus 41 ~~l~~ii~~~~~~gI~~lTvya 62 (243) ..+.+.++.|.++|+..+-+.. T Consensus 41 ~~l~~~~~~~~~~G~~~iEl~~ 62 (290) T 2zvr_A 41 GDLRKGMELAKRVGYQAVEIAV 62 (290) T ss_dssp HHHHHHHHHHHHHTCSEEEEEC T ss_pred CCHHHHHHHHHHHCCCEEEECC T ss_conf 7999999999995999899588 No 31 >>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 1.63A {Escherichia coli} (A:1-246) Probab=66.78 E-value=10 Score=18.95 Aligned_cols=63 Identities=5% Similarity=-0.015 Sum_probs=31.3 Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE Q ss_conf 9999999999999999769868999720233653230124888898886310000100002832631 Q gi|254780775|r 36 HRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRV 102 (243) Q Consensus 36 h~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~ 102 (243) .+...+.+.+.+++|.++|++.+.+.+...-.-....+.. +.+.+.+.+..+.+.++++++.+ T Consensus 80 ~~~~~~~~~~~i~~a~~lg~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~a~~~gi~~~~ 142 (246) T 1k77_A 80 EHEAHADIDLALEYALALNCEQVHVXAGVVPAGEDAERYR----AVFIDNIRYAADRFAPHGKRILV 142 (246) T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECCCCBCCTTSCHHHHH----HHHHHHHHHHHHHHGGGTCEEEE T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHH----HHHHHHHHHHHHHHHHHCCCEEE T ss_conf 9999999999999999737624754678777887889999----99999999999999861320355 No 32 >>1xp3_A Endonuclease IV; NFO, DNA replication, DNA recombination, DNA repair, spine, structural genomics, structural proteomics in europe, hydrolase; 2.57A {Bacillus anthracis} (A:) Probab=66.05 E-value=11 Score=18.86 Aligned_cols=129 Identities=8% Similarity=0.121 Sum_probs=68.0 Q ss_pred HHHHHHCCCCHH----------------HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 189997599877----------------9899999999999999997698689997202336532301248888988863 Q gi|254780775|r 22 GRWAAARGLPRC----------------AGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSF 85 (243) Q Consensus 22 rRwAk~~gl~~~----------------~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~ 85 (243) +++++++|+... .-.++..+.+...++.|.++|.+.+.++.-......-+.+..+.+.+. T Consensus 64 ~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~---- 139 (307) T 1xp3_A 64 RKHMEQNGIEEIIIHAPYIINVGNTTKPETFQLGVDFLRMEIERTSALGVAKQIVLHPGAHVGAGADAGIQQIIKG---- 139 (307) T ss_dssp HHHHHHTTCCCEEEECCTTCCTTCCSCHHHHHHHHHHHHHHHHHHHHSSSCCEEEECCEECTTSCHHHHHHHHHHH---- T ss_pred HHHHHHCCCCCEECCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHH---- T ss_conf 9999984997512158424334442438999999999999999999848798899899866668999999999999---- Q ss_pred HHHCCCCCCCCCCEEEECCC-CCCCCCCCHHHHHHHHHHH-CCCCCCEEEEEECCCHHHHHHHHHHHHHHH Q ss_conf 10000100002832631387-4451000023589998742-025431158972488157899877876436 Q gi|254780775|r 86 LKKGFYSLKKNNIKVRVIGN-RLSLDDDILCVLKEAEDQT-RLNTGLNLFIAFNYSSRDEISRAIKNIFQD 154 (243) Q Consensus 86 l~~~~~~~~~~~iki~~iGd-~~~lp~~i~~~i~~~e~~T-~~n~~~~Lnia~~Yggr~EI~~A~k~l~~~ 154 (243) +.+..+...+.|+++-+--. ...+-....+...-++..+ ..+-++.+-++=.+....++..+++.+... T Consensus 140 ~~~l~~~a~~~gi~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~~~~~~~~ 210 (307) T 1xp3_A 140 LNEVLTPDQTVNIALETMAGKGTECGRSFEEIAKIIDGVKYNEKLSVCFDTCHTHDAGYDIVNNFDGVLNE 210 (307) T ss_dssp HHHHCCTTCSSEEEEECCCCCTTEECCSHHHHHHHHHHCTTGGGEEEEEEHHHHHHTTCCHHHHHHHHHHH T ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECHHHHHHHCCCHHHHHHHHHHH T ss_conf 99874004641799874156678766788999999998367777699804888987127777789999999 No 33 >>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} (A:) Probab=65.95 E-value=11 Score=18.85 Aligned_cols=104 Identities=9% Similarity=0.145 Sum_probs=68.9 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHH Q ss_conf 99999999999976986899972023365323012488889888631000010000283263138744510000235899 Q gi|254780775|r 40 IEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKE 119 (243) Q Consensus 40 ~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~ 119 (243) .+.+.+.++++.+.||.-+.+.+-+-|.+.-+.+|...+++..........+ + +.|-- ...+...+.. T Consensus 20 ~~~~~~~i~~l~~~Gv~gl~~~G~~GE~~~Ls~~Er~~v~~~~~~~~~~~~~--------v-i~gv~---~~s~~~~i~~ 87 (294) T 2ehh_A 20 YEALGNLIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAAGRIK--------V-IAGTG---GNATHEAVHL 87 (294) T ss_dssp HHHHHHHHHHHHTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSE--------E-EEECC---CSCHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCEEEECEECCCCCCCCHHHHHHHHHHHHHHCCCCCE--------E-EECCC---CCCHHHHHHH T ss_conf 9999999999997699989978345461038899999999999997478733--------8-96377---7579999999 Q ss_pred HHHHHCCCCCCEEEEEECC--CHHHHHHHHHHHHHHHH Q ss_conf 9874202543115897248--81578998778764367 Q gi|254780775|r 120 AEDQTRLNTGLNLFIAFNY--SSRDEISRAIKNIFQDI 155 (243) Q Consensus 120 ~e~~T~~n~~~~Lnia~~Y--ggr~EI~~A~k~l~~~~ 155 (243) +...-+..-.-.+.+.-.| -+.++|++-.+.+++.+ T Consensus 88 a~~A~~~Gad~vl~~pP~~~~~~~~~i~~~~~~i~~a~ 125 (294) T 2ehh_A 88 TAHAKEVGADGALVVVPYYNKPTQRGLYEHFKTVAQEV 125 (294) T ss_dssp HHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC T ss_pred HHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCC T ss_conf 99999769999998888789989999999999998655 No 34 >>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, JCSG, PSI, protein structure initiative; HET: MCL; 1.80A {Thermotoga maritima} (A:) Probab=65.35 E-value=11 Score=18.78 Aligned_cols=104 Identities=14% Similarity=0.144 Sum_probs=68.0 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHH Q ss_conf 99999999999976986899972023365323012488889888631000010000283263138744510000235899 Q gi|254780775|r 40 IEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKE 119 (243) Q Consensus 40 ~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~ 119 (243) .+.+.+.++|+.+.||.-+.+.+.+.|.+.-+.+|-..+.+...+......+- - .|--. ..+.+.+.. T Consensus 32 ~~~~~~~i~~l~~~Gv~gi~~~G~tGE~~~Lt~~Er~~~~~~~~~~~~~~~~v--------~-~g~~~---~~~~~~~~~ 99 (306) T 1o5k_A 32 LESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPV--------I-VGAGT---NSTEKTLKL 99 (306) T ss_dssp HHHHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCE--------E-EECCC---SCHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHHHHCCCCCCE--------E-EECCC---CCHHHHHHH T ss_conf 99999999999976999899674153420389999999999999855688878--------9-85687---439999999 Q ss_pred HHHHHCCCCCCEEEEEEC--CCHHHHHHHHHHHHHHHH Q ss_conf 987420254311589724--881578998778764367 Q gi|254780775|r 120 AEDQTRLNTGLNLFIAFN--YSSRDEISRAIKNIFQDI 155 (243) Q Consensus 120 ~e~~T~~n~~~~Lnia~~--Yggr~EI~~A~k~l~~~~ 155 (243) +....+..-...+-+.-. -.+.++|++-.+.+++.+ T Consensus 100 a~~a~~~Gad~v~v~pP~~~~~s~~~i~~~~~~i~~a~ 137 (306) T 1o5k_A 100 VKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISERT 137 (306) T ss_dssp HHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTTC T ss_pred HHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHC T ss_conf 99999669999998799999979999999999999707 No 35 >>1xxx_A DHDPS, dihydrodipicolinate synthase; DAPA, RV2753C, lysine biosynthesis, structural genomics, PSI protein structure initiative; 2.28A {Mycobacterium tuberculosis} (A:1-219) Probab=64.50 E-value=11 Score=18.68 Aligned_cols=104 Identities=10% Similarity=0.052 Sum_probs=69.1 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHH Q ss_conf 99999999999976986899972023365323012488889888631000010000283263138744510000235899 Q gi|254780775|r 40 IEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKE 119 (243) Q Consensus 40 ~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~ 119 (243) .+.+.+.++|+.+.|+.-+.+-+.+-|.+.-+.+|...+++...+......+ |-+ |--..-.++..+.+.. T Consensus 34 ~~~~~~~i~~~~~~Gv~gi~v~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~--------vi~-gv~~~st~~ai~~a~~ 104 (219) T 1xxx_A 34 TATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRAR--------VIA-GAGTYDTAHSIRLAKA 104 (219) T ss_dssp HHHHHHHHHHHHHTTCSEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSE--------EEE-ECCCSCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHHHHHCCCCC--------EEE-CCCCHHHHHHHHHHHH T ss_conf 9999999999997799989978635306558899999999999998404564--------453-3543027889999999 Q ss_pred HHHHHCCCCCCEEEEEECC--CHHHHHHHHHHHHHHHH Q ss_conf 9874202543115897248--81578998778764367 Q gi|254780775|r 120 AEDQTRLNTGLNLFIAFNY--SSRDEISRAIKNIFQDI 155 (243) Q Consensus 120 ~e~~T~~n~~~~Lnia~~Y--ggr~EI~~A~k~l~~~~ 155 (243) +++. .-...+...-.| -++++|.+-.+.+++.+ T Consensus 105 a~~~---Gad~v~v~pP~~~~~~~~~i~~~~~~i~~a~ 139 (219) T 1xxx_A 105 CAAE---GAHGLLVVTPYYSKPPQRGLQAHFTAVADAT 139 (219) T ss_dssp HHHH---TCSEEEEECCCSSCCCHHHHHHHHHHHHTTC T ss_pred HHHH---CCCEEEEECCCCCCCCHHHHHHHHHHHHHHC T ss_conf 9982---5791999489889989999999999999725 No 36 >>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A (A:1-278) Probab=64.17 E-value=11 Score=18.64 Aligned_cols=104 Identities=9% Similarity=0.111 Sum_probs=68.9 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHH Q ss_conf 99999999999976986899972023365323012488889888631000010000283263138744510000235899 Q gi|254780775|r 40 IEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKE 119 (243) Q Consensus 40 ~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~ 119 (243) .+.+.+.++|+.+.|+.-|.+...+-|.+.=+.+|...+.+...+......+-+ + |-- ...+.+.+.. T Consensus 51 ~~~~~~~i~~~~~~Gv~gl~i~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi--------~-g~~---~~st~~ai~~ 118 (278) T 2v9d_A 51 KPGTAALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDRRVPVL--------I-GTG---GTNARETIEL 118 (278) T ss_dssp HHHHHHHHHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEE--------E-ECC---SSCHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCEEEECEEHHHHHHCCHHHHHHHHHHHHHHCCCCCCEE--------E-CCC---CCCCHHHHHH T ss_conf 999999999999869999997844663676849999999999998726655244--------2-245---5662068999 Q ss_pred HHHHHCCCCCCEEEEEECC--CHHHHHHHHHHHHHHHH Q ss_conf 9874202543115897248--81578998778764367 Q gi|254780775|r 120 AEDQTRLNTGLNLFIAFNY--SSRDEISRAIKNIFQDI 155 (243) Q Consensus 120 ~e~~T~~n~~~~Lnia~~Y--ggr~EI~~A~k~l~~~~ 155 (243) +.......-...+-+.-.| .++++|.+-.+.+++.. T Consensus 119 a~~a~~~G~d~vli~pP~~~~~~~~~i~~~~~~i~~a~ 156 (278) T 2v9d_A 119 SQHAQQAGADGIVVINPYYWKVSEANLIRYFEQVADSV 156 (278) T ss_dssp HHHHHHHTCSEEEEECCSSSCCCHHHHHHHHHHHHHTC T ss_pred HHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHC T ss_conf 99998626770465202234422005889999999845 No 37 >>3itv_A L-rhamnose isomerase; beta/alpha barrel, HOMO-tetramer, metal-binding protein, TIM barrel; HET: PSJ; 1.60A {Pseudomonas stutzeri} PDB: 3itt_A* 3itx_A 2hcv_A* 2i57_A* 2i56_A 3ity_A 3iud_A 3iuh_A 3iui_A 3itl_A* 3ito_A* (A:51-331) Probab=64.08 E-value=11 Score=18.63 Aligned_cols=34 Identities=21% Similarity=0.265 Sum_probs=27.3 Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC Q ss_conf 9999999999999999769868999720233653 Q gi|254780775|r 36 HRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWR 69 (243) Q Consensus 36 h~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~ 69 (243) .....+.+.+.++.|..+|.+.+++++....+.- T Consensus 104 r~~~~~~~~~~i~~a~~lG~~~i~~~~g~~~~~~ 137 (281) T 3itv_A 104 RAQAVEHNLECIEIGKAIGSKALTVWIGDGSNFP 137 (281) T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEECCCCEESST T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC T ss_conf 9999999999999999809985998589888777 No 38 >>3ju2_A Uncharacterized protein SMC04130; structural genomics, PSI-2, TIM barrel protein, protein structure initiative, Zn binding domain; 1.80A {Sinorhizobium meliloti} (A:) Probab=63.39 E-value=12 Score=18.55 Aligned_cols=115 Identities=11% Similarity=0.109 Sum_probs=61.1 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEC--CCCCCCCC Q ss_conf 9899999999999999997698689997202336532301248888988863100001000028326313--87445100 Q gi|254780775|r 34 AGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVI--GNRLSLDD 111 (243) Q Consensus 34 ~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~i--Gd~~~lp~ 111 (243) .-..++.+.+.+.++.|..+|.+.+.+.+.+...-..+..+ .++.+.+.+.+..+.+.++|+++.+= +....-+. T Consensus 77 ~~~~~~~~~~~~~i~~a~~lg~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~a~~~gi~l~iE~~~~~~~~~~ 153 (284) T 3ju2_A 77 SGREKAIDDNRRAVDEAAELGADCLVLVAGGLPGGSKNIDA---ARRMVVEGIAAVLPHARAAGVPLAIEPLHPMYAADR 153 (284) T ss_dssp HHHHHHHHHHHHHHHHHHHHTBSCEEEECBCCCTTCCCHHH---HHHHHHHHHHHHHHHHHHHTCCEEECCCCGGGTTTT T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH---HHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCC T ss_conf 99999999999998999996898421333102467899999---999999999999999875040011035656466872 Q ss_pred CCH---HHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHH Q ss_conf 002---3589998742025431158972488157899877876 Q gi|254780775|r 112 DIL---CVLKEAEDQTRLNTGLNLFIAFNYSSRDEISRAIKNI 151 (243) Q Consensus 112 ~i~---~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~l 151 (243) ... ..+..+.+....+-++.+-++=.+....++...+.+. T Consensus 154 ~~~~~~~~~~~~~~~~~~~vg~~~D~~h~~~~g~~~~~~~~~~ 196 (284) T 3ju2_A 154 ACVNTLGQALDICETLGPGVGVAIDVYHVWWDPDLANQIARAG 196 (284) T ss_dssp BSCCCHHHHHHHHHHHCTTEEEEEEHHHHTTCTTHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCCHHHHHHHH T ss_conf 1201699999888742760035532025541799689999864 No 39 >>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} (A:1-221) Probab=61.32 E-value=13 Score=18.31 Aligned_cols=103 Identities=17% Similarity=0.171 Sum_probs=72.9 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE-CCCCCCCCCCCHHHHH Q ss_conf 999999999999769868999720233653230124888898886310000100002832631-3874451000023589 Q gi|254780775|r 40 IEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRV-IGNRLSLDDDILCVLK 118 (243) Q Consensus 40 ~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~-iGd~~~lp~~i~~~i~ 118 (243) .+.+.+.++|+.+.||.-+.+-..+-|.+.-+.+|...+.+...+...... .|-+ +| ...+.+.++ T Consensus 36 ~~~~~~~i~~l~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~~~~--------~ii~gv~-----~~~t~~~i~ 102 (221) T 3cpr_A 36 IAAGREVAAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVGDRA--------KLIAGVG-----TNNTRTSVE 102 (221) T ss_dssp HHHHHHHHHHHHHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTS--------EEEEECC-----CSCHHHHHH T ss_pred HHHHHHHHHHHHHCCCCEEEECEECHHHHHCCHHHHHHHHHHHHHHHCCCC--------CEEECCC-----CCHHHHHHH T ss_conf 999999999999779998997844200324899999999999999836887--------6774267-----521999999 Q ss_pred HHHHHHCCCCCCEEEEEECC--CHHHHHHHHHHHHHHHH Q ss_conf 99874202543115897248--81578998778764367 Q gi|254780775|r 119 EAEDQTRLNTGLNLFIAFNY--SSRDEISRAIKNIFQDI 155 (243) Q Consensus 119 ~~e~~T~~n~~~~Lnia~~Y--ggr~EI~~A~k~l~~~~ 155 (243) .++..-+..-.-.+-+.-.| .+.+++.+=.+.+++.+ T Consensus 103 ~a~~a~~~Gad~vll~~P~~~~~~~~~~~~~~~~v~~~~ 141 (221) T 3cpr_A 103 LAEAAASAGADGLLVVTPYYSKPSQEGLLAHFGAIAAAT 141 (221) T ss_dssp HHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC T ss_pred HHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHC T ss_conf 999999749899997787578989999999999998663 No 40 >>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} (A:1-245) Probab=58.42 E-value=14 Score=18.00 Aligned_cols=105 Identities=12% Similarity=0.081 Sum_probs=71.3 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHH Q ss_conf 99999999999976986899972023365323012488889888631000010000283263138744510000235899 Q gi|254780775|r 40 IEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKE 119 (243) Q Consensus 40 ~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~ 119 (243) .+.+.+.++++.+.|+.-+.+..-+.|-+.-+.+|-..+.+...+......+-+. | -....+.+.+.. T Consensus 24 ~~~~~~~i~~l~~~Gv~gi~~~G~tgE~~~Lt~~Er~~l~~~~~~~~~~~~~v~~---------g---~~~~~~~~~ie~ 91 (245) T 3eb2_A 24 ADVMGRLCDDLIQAGVHGLTPLGSTGEFAYLGTAQREAVVRATIEAAQRRVPVVA---------G---VASTSVADAVAQ 91 (245) T ss_dssp HHHHHHHHHHHHHTTCSCBBTTSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCBEE---------E---EEESSHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCHHHHCCHHHHHHHHHHHHHCCCCCCEEEE---------E---CCCCCHHHHHHH T ss_conf 9999999999997699989985643216559899999887654303544320474---------0---345556878775 Q ss_pred HHHHHCCCCCCEEEEEE--CCCHHHHHHHHHHHHHHHHH Q ss_conf 98742025431158972--48815789987787643676 Q gi|254780775|r 120 AEDQTRLNTGLNLFIAF--NYSSRDEISRAIKNIFQDIE 156 (243) Q Consensus 120 ~e~~T~~n~~~~Lnia~--~Yggr~EI~~A~k~l~~~~~ 156 (243) +....+..-...+-+-- .-.++++|.+-.+.+++.+. T Consensus 92 a~~a~~~G~d~il~~pP~~~~~~~~~i~~~~~~i~~~~~ 130 (245) T 3eb2_A 92 AKLYEKLGADGILAILEAYFPLKDAQIESYFRAIADAVE 130 (245) T ss_dssp HHHHHHHTCSEEEEEECCSSCCCHHHHHHHHHHHHHHCS T ss_pred HHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCC T ss_conf 420235795078504665356547889998766775379 No 41 >>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} (A:) Probab=58.20 E-value=14 Score=17.97 Aligned_cols=105 Identities=13% Similarity=0.063 Sum_probs=72.7 Q ss_pred HHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHH Q ss_conf 99999999999976-98689997202336532301248888988863100001000028326313874451000023589 Q gi|254780775|r 40 IEVFNEIVAAAAEV-GIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLK 118 (243) Q Consensus 40 ~~~l~~ii~~~~~~-gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~ 118 (243) .+.+.+.++|+++. |+.-+.+...+-|.+.-+.+|-..+++...+......+-+ .|- ....+.+.+. T Consensus 23 ~~~~~~~i~~li~~~Gv~gi~~~G~tGE~~~Ls~eEr~~l~~~~v~~~~~~~pvi---------~gv---~~~~~~~~i~ 90 (293) T 1f6k_A 23 EKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALI---------AQV---GSVNLKEAVE 90 (293) T ss_dssp HHHHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEE---------EEC---CCSCHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHHHHHCCCCEEE---------EEC---CCCCHHHHHH T ss_conf 9999999999998289998997832766434799999999999999838987399---------966---8788999999 Q ss_pred HHHHHHCCCCCCEEEEEECCC--HHHHHHHHHHHHHHHHH Q ss_conf 998742025431158972488--15789987787643676 Q gi|254780775|r 119 EAEDQTRLNTGLNLFIAFNYS--SRDEISRAIKNIFQDIE 156 (243) Q Consensus 119 ~~e~~T~~n~~~~Lnia~~Yg--gr~EI~~A~k~l~~~~~ 156 (243) .++...+..-.-.+.+.-.|. +++++.+-.+.+++.+. T Consensus 91 ~a~~a~~~Ga~~v~i~~P~~~~~~~~~i~~~~~~i~~~~~ 130 (293) T 1f6k_A 91 LGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETG 130 (293) T ss_dssp HHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHC T ss_pred HHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCC T ss_conf 9999996599999978887889898999999999997218 No 42 >>2j6v_A UV endonuclease, UVDE; plasmid, TIM barrel, DNA repair, DNA binding protein, lyase; HET: KCX ALY; 1.55A {Thermus thermophilus} PDB: 3bzg_A 3c0s_A* 3c0l_A 3c0q_A* 3bzj_A (A:) Probab=57.72 E-value=15 Score=17.92 Aligned_cols=110 Identities=11% Similarity=0.044 Sum_probs=61.0 Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCH-HHHH-HHHHHHHHHHHHCCCCCCCCCCEEEECCC-CC----C Q ss_conf 9999999999999999769868999720233653230-1248-88898886310000100002832631387-44----5 Q gi|254780775|r 36 HRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPV-SEIS-ELVKLIKSFLKKGFYSLKKNNIKVRVIGN-RL----S 108 (243) Q Consensus 36 h~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~-~Ev~-~L~~l~~~~l~~~~~~~~~~~iki~~iGd-~~----~ 108 (243) ...-+..+.++++||.+.||+ +|=+|++=|-.-. .++. .....+...+.+--..++++++|+.+=-+ .- . T Consensus 56 ~~~N~~~l~~il~~n~~~~I~---~yRisS~lfP~~s~~~~~~~~~~~~~~~l~~iG~~Ak~~~iRLS~HP~qf~vL~S~ 132 (301) T 2j6v_A 56 AAENLRDLERILRFNADHGFA---LFRIGQHLIPFASHPLFPYDWEGAYEEELARLGALARAFGQRLSMHPGQYVNPGSP 132 (301) T ss_dssp HHHHHHHHHHHHHHHHHHTCC---EEECCGGGSTTTTSTTCCSCHHHHHHHHHHHHHHHHHHTTCEEEECCCTTCCTTCS T ss_pred HHHHHHHHHHHHHHHHHCCCC---EEEECHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCC T ss_conf 999999999999999976972---79806011656447401364689999999999999998296388669855026899 Q ss_pred CCCCCHHHHHHHHHHHC-----CCC--CCEEEEEECCCHHHHHHHHH Q ss_conf 10000235899987420-----254--31158972488157899877 Q gi|254780775|r 109 LDDDILCVLKEAEDQTR-----LNT--GLNLFIAFNYSSRDEISRAI 148 (243) Q Consensus 109 lp~~i~~~i~~~e~~T~-----~n~--~~~Lnia~~Yggr~EI~~A~ 148 (243) =|+-+.+.|.+++.-.. +.. .+++-+...||++.+.+.-. T Consensus 133 ~~~vve~Si~~L~~ha~~~d~mG~~~~~inIH~gg~~g~k~~~~~rf 179 (301) T 2j6v_A 133 DPEVVERSLAELRYSARLLSLLGAEDGVLVLHLGGAYGEKGKALRRF 179 (301) T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEECCCCTTCHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHH T ss_conf 88999999999998999999836878767996478777218999999 No 43 >>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthesis, lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A (A:) Probab=56.24 E-value=16 Score=17.77 Aligned_cols=104 Identities=9% Similarity=0.064 Sum_probs=70.8 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHH Q ss_conf 99999999999976986899972023365323012488889888631000010000283263138744510000235899 Q gi|254780775|r 40 IEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKE 119 (243) Q Consensus 40 ~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~ 119 (243) .+.+.+.++++.+.||.-+.+...+-|.+.-+.+|-..+++...+......+-+ +- +| ...+.+.+.. T Consensus 21 ~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~ii------~g-v~-----~~s~~~~ie~ 88 (292) T 2ojp_A 21 RASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVI------AG-TG-----ANATAEAISL 88 (292) T ss_dssp HHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEE------EE-CC-----CSSHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHHHHCCCHHHEE------EC-CC-----CCCHHHHHHH T ss_conf 999999999999769998996852643213899999999776754403301122------01-22-----3106889998 Q ss_pred HHHHHCCCCCCEEEEEECC--CHHHHHHHHHHHHHHHH Q ss_conf 9874202543115897248--81578998778764367 Q gi|254780775|r 120 AEDQTRLNTGLNLFIAFNY--SSRDEISRAIKNIFQDI 155 (243) Q Consensus 120 ~e~~T~~n~~~~Lnia~~Y--ggr~EI~~A~k~l~~~~ 155 (243) +...-+..-...+-+.-.| -+.+||.+-.+.+++.. T Consensus 89 a~~a~~~Gad~vlv~~P~~~~~~~~~i~~~~~~ia~a~ 126 (292) T 2ojp_A 89 TQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHT 126 (292) T ss_dssp HHHTTTSSCSEEEEECCCSSCCCHHHHHHHHHHHHTTC T ss_pred HHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCC T ss_conf 76688639964176078788989999999999972158 No 44 >>3bi8_A Dihydrodipicolinate synthase; TIM-barrel, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MLT; 1.96A {Clostridium botulinum} PDB: 3ird_A* (A:) Probab=53.31 E-value=17 Score=17.47 Aligned_cols=104 Identities=10% Similarity=0.147 Sum_probs=70.8 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHH Q ss_conf 99999999999976986899972023365323012488889888631000010000283263138744510000235899 Q gi|254780775|r 40 IEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKE 119 (243) Q Consensus 40 ~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~ 119 (243) .+.+.+.++|+.+.|+.-+.+.+.+.|.+.=+.+|-..+++...+......+-+ .|-- ...+.+.+.. T Consensus 21 ~~~~~~~i~~l~~~Gv~gi~~~g~tGE~~~Ls~~Er~~l~~~~~~~~~~~~~i~---------~g~~---~~~~~~~i~~ 88 (291) T 3bi8_A 21 FDKLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDKVNKRIPVI---------AGTG---SNNTAASIAM 88 (291) T ss_dssp HHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEE---------EECC---CSSHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCHHHCCHHHHHHHHHHHHHHCCCCCEEE---------EECC---CHHHHHHHHH T ss_conf 999999999999779999998910547203899999999999998526662498---------6116---6178999999 Q ss_pred HHHHHCCCCCCEEEEEECC--CHHHHHHHHHHHHHHHH Q ss_conf 9874202543115897248--81578998778764367 Q gi|254780775|r 120 AEDQTRLNTGLNLFIAFNY--SSRDEISRAIKNIFQDI 155 (243) Q Consensus 120 ~e~~T~~n~~~~Lnia~~Y--ggr~EI~~A~k~l~~~~ 155 (243) +...-+..-...+-..-.| .+.+|+.+-.+.+++.+ T Consensus 89 a~~a~~~Ga~~vli~~P~~~~~s~~~i~~~~~~ia~a~ 126 (291) T 3bi8_A 89 SKWAESIGVDGLLVITPYYNKTTQKGLVKHFKAVSDAV 126 (291) T ss_dssp HHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTC T ss_pred HHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCC T ss_conf 99999718997999498688899999999999998336 No 45 >>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} (A:153-280) Probab=53.20 E-value=13 Score=18.19 Aligned_cols=90 Identities=19% Similarity=0.275 Sum_probs=54.8 Q ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEE--CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC Q ss_conf 28326313874451000023589998742025431158972--4881578998778764367648968778115531011 Q gi|254780775|r 96 NNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGLNLFIAF--NYSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKY 173 (243) Q Consensus 96 ~~iki~~iGd~~~lp~~i~~~i~~~e~~T~~n~~~~Lnia~--~Yggr~EI~~A~k~l~~~~~~~~~~~~~I~~~~i~~~ 173 (243) +|++|-++||.+.....+...+... ++.+.++- .|.-.+++++.+++.++..-......++ +. T Consensus 2 ~g~kia~vGd~~rv~~Sl~~~ls~~--------g~~~~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~~-----~~-- 66 (128) T 1pvv_A 2 KGVKVVYVGDGNNVAHSLMIAGTKL--------GADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHD-----PV-- 66 (128) T ss_dssp TTCEEEEESCCCHHHHHHHHHHHHT--------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESC-----HH-- T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH--------CCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECC-----HH-- T ss_conf 6757999778875267799999971--------57689988986578789999999977751984999769-----99-- Q ss_pred CCCCCCCCCCEEEEC---------CCCEECCCCCCCHHC Q ss_conf 336787765269945---------785213365640113 Q gi|254780775|r 174 LDTSDVPDPDLIIRT---------GGEKRLSDFLLWQVA 203 (243) Q Consensus 174 L~~~~~p~pDLlIRT---------sGe~RLSnFllwq~~ 203 (243) ..+++.|+|.=+ ..+.+.+.|..||+. T Consensus 67 ---eai~~aDviyt~~w~~~~~~~~~~~~~~~~~~y~i~ 102 (128) T 1pvv_A 67 ---KAVKDADVIYTDVWASMGQEAEAEERRKIFRPFQVN 102 (128) T ss_dssp ---HHTTTCSEEEECCCCCSSTTSSSSHHHHHHGGGCBC T ss_pred ---HHHCCCCEEEEHHHHHCCCCHHHHHHHHHHHHCCCC T ss_conf ---985479999432888635611159999877626735 No 46 >>1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET: AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A 1yh1_A* 1zq8_A* 2g6a_A* 2g65_A* 2g6c_A* 2g68_A* (A:188-324) Probab=52.13 E-value=13 Score=18.35 Aligned_cols=90 Identities=13% Similarity=0.186 Sum_probs=49.8 Q ss_pred CCCEEEECCCCCC--CCCCCHHHHHHHHHHHCCCCCCEEEEEE---CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH Q ss_conf 2832631387445--1000023589998742025431158972---4881578998778764367648968778115531 Q gi|254780775|r 96 NNIKVRVIGNRLS--LDDDILCVLKEAEDQTRLNTGLNLFIAF---NYSSRDEISRAIKNIFQDIESGSVCSHDVDSSLI 170 (243) Q Consensus 96 ~~iki~~iGd~~~--lp~~i~~~i~~~e~~T~~n~~~~Lnia~---~Yggr~EI~~A~k~l~~~~~~~~~~~~~I~~~~i 170 (243) .++++-++||... .+.++...+... ++.+.+|. .|--..++++.+++.+++.-..-...+++.+ T Consensus 6 ~gl~ia~vGD~~~~rv~~Sl~~~~~~~--------g~~~~~~~pp~~~~p~~~~~~~a~~~~~~~g~~i~~~~d~~e--- 74 (137) T 1zq6_A 6 YVLTWTYHPKPLNTAVANSALTIATRM--------GMDVTLLCPTPDYILDERYMDWAAQNVAESGGSLQVSHDIDS--- 74 (137) T ss_dssp EEEEECCCSSCCCSHHHHHHHHHHHHT--------TCEEEEECSSGGGCCCHHHHHHHHHHHHHHSCEEEEECCHHH--- T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHH--------CCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCHHH--- T ss_conf 789851047743338998888987741--------562478447623577889999887777761576189717778--- Q ss_pred CCCCCCCCCCCCCEEEEC-------CC-----CEECCCCCCCHHC Q ss_conf 011336787765269945-------78-----5213365640113 Q gi|254780775|r 171 AKYLDTSDVPDPDLIIRT-------GG-----EKRLSDFLLWQVA 203 (243) Q Consensus 171 ~~~L~~~~~p~pDLlIRT-------sG-----e~RLSnFllwq~~ 203 (243) .+++.|+|+=| ++ .+|++-|..||+. T Consensus 75 -------av~~aDviy~~~wq~~~~~~~~~~~~~~~~~~~~y~v~ 112 (137) T 1zq6_A 75 -------AYAGADVVYAKSWGALPFFGNWEPEKPIRDQYQHFIVD 112 (137) T ss_dssp -------HHTTCSEEEEECCCCGGGTTCCTTHHHHHGGGGGGSBC T ss_pred -------HHCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHCCCHH T ss_conf -------72487799964067532143113569999987635837 No 47 >>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A* (A:) Probab=50.55 E-value=19 Score=17.19 Aligned_cols=120 Identities=10% Similarity=-0.029 Sum_probs=59.4 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC--CCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCC---CCC Q ss_conf 989999999999999999769868999720233653--230124888898886310000100002832631387---445 Q gi|254780775|r 34 AGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWR--RPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGN---RLS 108 (243) Q Consensus 34 ~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~--R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iGd---~~~ 108 (243) .--++..+.+.+.++.|..+|.+++++..-+..... .........++.+.+.+....+.+.++|+++-+--. ... T Consensus 81 ~~~~~~~~~~~~~i~~a~~lg~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~Gi~~~iE~~~~~~~~ 160 (290) T 2qul_A 81 SVRDAGTEYVKRLLDDCHLLGAPVFAGLTFCAWPQSPPLDMKDKRPYVDRAIESVRRVIKVAEDYGIIYALEVVNRFEQW 160 (290) T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSEEEEEEEEESSCCCCTTCCCCHHHHHHHHHHHHTTHHHHHHHTCEEEEECCCTTTCS T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCC T ss_conf 99999999999999999995895686314432235788874357999999999999987667762531431135765565 Q ss_pred CCCCCHHHHHHHHHHH-CCCCCCEEEEEECCCHHHHHHHHHHHHHHH Q ss_conf 1000023589998742-025431158972488157899877876436 Q gi|254780775|r 109 LDDDILCVLKEAEDQT-RLNTGLNLFIAFNYSSRDEISRAIKNIFQD 154 (243) Q Consensus 109 lp~~i~~~i~~~e~~T-~~n~~~~Lnia~~Yggr~EI~~A~k~l~~~ 154 (243) +...... +.++-+.+ ..+-++.+-++=.+..-.++...++++... T Consensus 161 ~~~~~~~-~~~l~~~~~~~~~~i~~D~~h~~~~~~~~~~~l~~~~~~ 206 (290) T 2qul_A 161 LCNDAKE-AIAFADAVDSPACKVQLDTFHMNIEETSFRDAILACKGK 206 (290) T ss_dssp SCCSHHH-HHHHHHHHCCTTEEEEEEHHHHHHHCSCHHHHHHHTTTT T ss_pred CCCCHHH-HHHHHHHCCCCCCCCCCCCHHHHHCCCCHHHHHHHHCCE T ss_conf 5587899-866554216864222344268887399989987641570 No 48 >>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} (A:) Probab=44.49 E-value=24 Score=16.60 Aligned_cols=79 Identities=8% Similarity=-0.011 Sum_probs=49.8 Q ss_pred HHHHHHCCCCHH-----------------HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHH Q ss_conf 189997599877-----------------989999999999999999769868999720233653230124888898886 Q gi|254780775|r 22 GRWAAARGLPRC-----------------AGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKS 84 (243) Q Consensus 22 rRwAk~~gl~~~-----------------~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~ 84 (243) ++..++.|+... +..+...+.+.+.++.|.++|++.+++.......-.- .+.-.+.+.+ T Consensus 53 ~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~i~~~~g~~~~~~~----~~~~~~~~~~ 128 (285) T 1qtw_A 53 KAACEKYHYTSAQILPHDSYLINLGHPVTEALEKSRDAFIDEMQRCEQLGLSLLNFHPGSHLMQIS----EEDCLARIAE 128 (285) T ss_dssp HHHHHHTTCCGGGBCCBCCTTCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCCEEEECCCBCTTTSC----HHHHHHHHHH T ss_pred HHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCC----HHHHHHHHHH T ss_conf 999998599852899717730002685589999999999999999998199721782687788755----8999999999 Q ss_pred HHHHCCCCCCCCCCEEEECC Q ss_conf 31000010000283263138 Q gi|254780775|r 85 FLKKGFYSLKKNNIKVRVIG 104 (243) Q Consensus 85 ~l~~~~~~~~~~~iki~~iG 104 (243) .+.+..+.+.+.++++.+-- T Consensus 129 ~l~~~~~~a~~~g~~~~~e~ 148 (285) T 1qtw_A 129 SINIALDKTQGVTAVIENTA 148 (285) T ss_dssp HHHHHHHHCSSCEEEEECCC T ss_pred HHHHHHHHHCCCCCEEEECC T ss_conf 87999887328851365215 No 49 >>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A (A:) Probab=44.36 E-value=24 Score=16.58 Aligned_cols=104 Identities=11% Similarity=0.051 Sum_probs=66.6 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHH Q ss_conf 99999999999976986899972023365323012488889888631000010000283263138744510000235899 Q gi|254780775|r 40 IEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKE 119 (243) Q Consensus 40 ~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~ 119 (243) .+.+.+.++|+.+.|+.-+.+...+-|.+.-+.+|...+++...+......+-+ --+| ...+.+.++. T Consensus 28 ~~~~~~~~~~l~~~G~~gi~~~GstGE~~~Lt~eEr~~li~~~~~~~~~~~~vi-------~gv~-----~~~t~~~i~~ 95 (309) T 3fkr_A 28 LASQKRAVDFMIDAGSDGLCILANFSEQFAITDDERDVLTRTILEHVAGRVPVI-------VTTS-----HYSTQVCAAR 95 (309) T ss_dssp HHHHHHHHHHHHHTTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEE-------EECC-----CSSHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHHHHCCCCCEEE-------EECC-----CCCHHHHHHH T ss_conf 999999999999759998997835345464799999999999999706986189-------8368-----7868999999 Q ss_pred HHHHHCCCCCCEEEEEECC-----CHHHHHHHHHHHHHHHH Q ss_conf 9874202543115897248-----81578998778764367 Q gi|254780775|r 120 AEDQTRLNTGLNLFIAFNY-----SSRDEISRAIKNIFQDI 155 (243) Q Consensus 120 ~e~~T~~n~~~~Lnia~~Y-----ggr~EI~~A~k~l~~~~ 155 (243) +....+..-...+.+.--| .++++|.+-.+.+++.+ T Consensus 96 a~~a~~~Gad~v~i~pP~~~~~~~~s~~~i~~y~~~i~~a~ 136 (309) T 3fkr_A 96 SLRAQQLGAAMVMAMPPYHGATFRVPEAQIFEFYARVSDAI 136 (309) T ss_dssp HHHHHHTTCSEEEECCSCBTTTBCCCHHHHHHHHHHHHHHC T ss_pred HHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHC T ss_conf 99962149978996387445678989999999999997303 No 50 >>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, cytoplasm; 2.00A {Neisseria meningitidis serogroup B} (A:) Probab=40.29 E-value=28 Score=16.19 Aligned_cols=104 Identities=13% Similarity=0.192 Sum_probs=70.5 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHH Q ss_conf 99999999999976986899972023365323012488889888631000010000283263138744510000235899 Q gi|254780775|r 40 IEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKE 119 (243) Q Consensus 40 ~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~ 119 (243) .+.+.+.++++.+.|+.-+.+...+-|-+.=+.+|-..+++...+......+-+ +- +| ...+.+.+.. T Consensus 27 ~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~vi------~g-v~-----~~s~~~~i~~ 94 (297) T 3flu_A 27 YEQLRDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAKRVPVI------AG-TG-----ANNTVEAIAL 94 (297) T ss_dssp HHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEE------EE-CC-----CSSHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHHHHCCCCCCEE------CC-CC-----CCCHHHHHHH T ss_conf 999999999999769998996830423544989999999999998704654132------16-66-----5329999999 Q ss_pred HHHHHCCCCCCEEEEEECC--CHHHHHHHHHHHHHHHH Q ss_conf 9874202543115897248--81578998778764367 Q gi|254780775|r 120 AEDQTRLNTGLNLFIAFNY--SSRDEISRAIKNIFQDI 155 (243) Q Consensus 120 ~e~~T~~n~~~~Lnia~~Y--ggr~EI~~A~k~l~~~~ 155 (243) +....+..-...+-+.-.| .+.+||.+..+.+++.. T Consensus 95 a~~a~~~Gad~v~v~pP~~~~~~~~~i~~~~~~i~~a~ 132 (297) T 3flu_A 95 SQAAEKAGADYTLSVVPYYNKPSQEGIYQHFKTIAEAT 132 (297) T ss_dssp HHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC T ss_pred HHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHCC T ss_conf 99999809885473378788989999999999998557 No 51 >>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex; HET: PSQ; 1.70A {Escherichia coli} (G:153-278) Probab=39.10 E-value=24 Score=16.53 Aligned_cols=90 Identities=18% Similarity=0.242 Sum_probs=44.7 Q ss_pred CCCEEEECCCC-CCCCCCCHHHHHHHHHHHCCCCCCEEEEEE--CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC Q ss_conf 28326313874-451000023589998742025431158972--488157899877876436764896877811553101 Q gi|254780775|r 96 NNIKVRVIGNR-LSLDDDILCVLKEAEDQTRLNTGLNLFIAF--NYSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAK 172 (243) Q Consensus 96 ~~iki~~iGd~-~~lp~~i~~~i~~~e~~T~~n~~~~Lnia~--~Yggr~EI~~A~k~l~~~~~~~~~~~~~I~~~~i~~ 172 (243) .|++|-++||. .....+....+... ++.+.++- .|.=..+++..+++.+++.-......++ +.+ T Consensus 2 ~glki~~vGd~~~rv~~S~~~~~~~~--------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d-----~~e 68 (126) T 1duv_G 2 NEMTLVYAGDARNNMGNSMLEAAALT--------GLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTED-----VAK 68 (126) T ss_dssp GGCEEEEESCTTSHHHHHHHHHHHHH--------CCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESC-----HHH T ss_pred CCEEEEEECCCCCCHHHHHHHHHHCC--------CCEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEC-----HHH T ss_conf 64279983575432067788776326--------82243113423488489999998764047986899724-----322 Q ss_pred CCCCCCCCCCCEEEECC-------C---CEECCCCCCCHHC Q ss_conf 13367877652699457-------8---5213365640113 Q gi|254780775|r 173 YLDTSDVPDPDLIIRTG-------G---EKRLSDFLLWQVA 203 (243) Q Consensus 173 ~L~~~~~p~pDLlIRTs-------G---e~RLSnFllwq~~ 203 (243) .+.+.|+|+=|. . ++|.+.|..||+. T Consensus 69 -----a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~~y~v~ 104 (126) T 1duv_G 69 -----GVEGADFIYTDVWVSMGEAKEKWAERIALLREYQVN 104 (126) T ss_dssp -----HHTTCSEEEECCSSCTTSCTTHHHHHHHHHGGGCBC T ss_pred -----HCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCEEC T ss_conf -----115797873104667665554555443331161787 No 52 >>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} (A:153-280) Probab=38.16 E-value=16 Score=17.64 Aligned_cols=90 Identities=17% Similarity=0.257 Sum_probs=51.8 Q ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEC--CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC Q ss_conf 283263138744510000235899987420254311589724--881578998778764367648968778115531011 Q gi|254780775|r 96 NNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGLNLFIAFN--YSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKY 173 (243) Q Consensus 96 ~~iki~~iGd~~~lp~~i~~~i~~~e~~T~~n~~~~Lnia~~--Yggr~EI~~A~k~l~~~~~~~~~~~~~I~~~~i~~~ 173 (243) .|++|-++||.+....++...+.. =++.+.+|-+ |.-..++.+.+++.+++.-..-...+++.+ T Consensus 2 ~gl~i~~vGd~~nv~~Sl~~~~~~--------~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~e------ 67 (128) T 1oth_A 2 KGLTLSWIGDGNNILHSIMMSAAK--------FGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLE------ 67 (128) T ss_dssp TTCEEEEESCSSHHHHHHHTTTGG--------GTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHH------ T ss_pred CCCEEEEECCCCCCCCCHHHHHHH--------CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHH------ T ss_conf 896799965655651319999876--------287378983577687488999999999864997999728899------ Q ss_pred CCCCCCCCCCEEEECC---------CCEECCCCCCCHHC Q ss_conf 3367877652699457---------85213365640113 Q gi|254780775|r 174 LDTSDVPDPDLIIRTG---------GEKRLSDFLLWQVA 203 (243) Q Consensus 174 L~~~~~p~pDLlIRTs---------Ge~RLSnFllwq~~ 203 (243) .+++.|+++=+. .+.|+.-|..||+. T Consensus 68 ----ai~~aDvvyt~~w~~~~~~~~~~~~~~~~~~y~vt 102 (128) T 1oth_A 68 ----AAHGGNVLITDTWISMGREEEKKKRLQAFQGYQVT 102 (128) T ss_dssp ----HHTTCSEEEECCSSCTTCGGGHHHHHHHTTTCCBC T ss_pred ----HHCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHH T ss_conf ----85079979998546302555578899888898888 No 53 >>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} (A:) Probab=36.49 E-value=32 Score=15.81 Aligned_cols=103 Identities=12% Similarity=0.103 Sum_probs=71.9 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHH Q ss_conf 99999999999976986899972023365323012488889888631000010000283263138744510000235899 Q gi|254780775|r 40 IEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKE 119 (243) Q Consensus 40 ~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~ 119 (243) .+.+.+.++++.+.||.-+.+.+.+-|.+.-+.+|-..+++...+...+. .+-+- +| ...+.+.++. T Consensus 28 ~~~l~~~i~~l~~~Gv~gi~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~-------~ii~g-v~-----~~st~~~ie~ 94 (313) T 3dz1_A 28 DVSIDRLTDFYAEVGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRAKSX-------QVIVG-VS-----APGFAAXRRL 94 (313) T ss_dssp HHHHHHHHHHHHHTTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHCTTS-------EEEEE-CC-----CSSHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCCHHHCCHHHHHHHHHHHHHHCCCC-------CEEEE-EC-----CCHHHHHHHH T ss_conf 99999999999976999899765756723389999999999865203565-------31331-02-----2004667777 Q ss_pred HHHHHC-CCCCCEEEEEECCCHHHHHHHHHHHHHHHH Q ss_conf 987420-254311589724881578998778764367 Q gi|254780775|r 120 AEDQTR-LNTGLNLFIAFNYSSRDEISRAIKNIFQDI 155 (243) Q Consensus 120 ~e~~T~-~n~~~~Lnia~~Yggr~EI~~A~k~l~~~~ 155 (243) +....+ +-..+.+.=...+.+.++|.+-.+.+++.. T Consensus 95 a~~a~~~Gad~v~v~Ppy~~~~~~~i~~~~~~i~~a~ 131 (313) T 3dz1_A 95 ARLSXDAGAAGVXIAPPPSLRTDEQITTYFRQATEAI 131 (313) T ss_dssp HHHHHHHTCSEEEECCCTTCCSHHHHHHHHHHHHHHH T ss_pred HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC T ss_conf 6534431233333465311244336888899888740 No 54 >>2v1l_A Hypothetical protein; pathogenicity island, unknown function; 2.13A {Vibrio cholerae} (A:) Probab=36.27 E-value=32 Score=15.79 Aligned_cols=35 Identities=11% Similarity=0.570 Sum_probs=27.5 Q ss_pred CCCCCCCCE-EEECCCCEECCCCCCCHHCC-CEEEECCCCCCCC Q ss_conf 678776526-99457852133656401135-5388636878888 Q gi|254780775|r 176 TSDVPDPDL-IIRTGGEKRLSDFLLWQVAY-SEFVFIPEYWPDF 217 (243) Q Consensus 176 ~~~~p~pDL-lIRTsGe~RLSnFllwq~~y-sEl~F~~~lWPdf 217 (243) .++..|+.+ |.|++.. .||+.| |.+-+....+|++ T Consensus 54 ~GGfHPVEI~l~r~~~~-------~W~i~yITDFsY~G~~~pEL 90 (148) T 2v1l_A 54 DGGFHPVEIALSQSSDG-------QWCIEYITDFAYVGNHFPEL 90 (148) T ss_dssp TBCCCCEEEEEEECSSS-------CEEEEEEEEEEEC---CCCE T ss_pred CCCCCCEEEEEEECCCC-------CEEEEEEEEECCCCCCCCCE T ss_conf 69967689999985899-------68999998632469998743 No 55 >>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus} (A:) Probab=35.90 E-value=32 Score=15.75 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=12.5 Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHH Q ss_conf 1589724881578998778764367 Q gi|254780775|r 131 NLFIAFNYSSRDEISRAIKNIFQDI 155 (243) Q Consensus 131 ~Lnia~~Yggr~EI~~A~k~l~~~~ 155 (243) ++...+-||+.+||.+.++++++.. T Consensus 278 ~~~~~l~~gt~eev~~~v~~~l~~~ 302 (338) T 2eja_A 278 NLEPAVLYASEEVIEEKTLGLLRRI 302 (338) T ss_dssp CBCGGGGGSCHHHHHHHHHHHHTTC T ss_pred CCCHHHHCCCHHHHHHHHHHHHHHC T ss_conf 9884787799999999999999966 No 56 >>2ob5_A AGR_C_3656P, hypothetical protein ATU2016; putavite sugar binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.60A {Agrobacterium tumefaciens str} (A:) Probab=35.11 E-value=26 Score=16.34 Aligned_cols=21 Identities=29% Similarity=0.313 Sum_probs=16.8 Q ss_pred CCCCEEEECCCCEECCCCCCC Q ss_conf 765269945785213365640 Q gi|254780775|r 180 PDPDLIIRTGGEKRLSDFLLW 200 (243) Q Consensus 180 p~pDLlIRTsGe~RLSnFllw 200 (243) ..+..+||||-.+.-+||+|- T Consensus 126 k~a~aVVrTGE~~~YaNiIL~ 146 (153) T 2ob5_A 126 KQAYCVITTGETRFYGCFLLT 146 (153) T ss_dssp HTSSEEEECSCCSTTCCEEEE T ss_pred CCCCEEEECCCCCCEEEEEEE T ss_conf 368899988999754689987 No 57 >>1vk1_A Conserved hypothetical protein; reductive methylation, dimethyl lysine, structural genomics, PSI, protein structure initiative; HET: MLY; 1.20A {Pyrococcus furiosus} (A:1-93,A:228-242) Probab=34.49 E-value=13 Score=18.38 Aligned_cols=18 Identities=6% Similarity=-0.280 Sum_probs=9.1 Q ss_pred CCCHHHHHHHHHHHHHHH Q ss_conf 488157899877876436 Q gi|254780775|r 137 NYSSRDEISRAIKNIFQD 154 (243) Q Consensus 137 ~Yggr~EI~~A~k~l~~~ 154 (243) .-+|+.+|++.-..+... T Consensus 60 ~~~g~y~Ii~G~~R~~Aa 77 (108) T 1vk1_A 60 PGTDEYLIVDGHHRWAGL 77 (108) T ss_dssp TTSSCEEEEECHHHHHHH T ss_pred CCCCCEEEEEHHHHHHHH T ss_conf 889757985055599999 No 58 >>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, JCSG, protein structure initiative, PSI; 2.25A {Thermotoga maritima} (A:165-294) Probab=34.47 E-value=34 Score=15.61 Aligned_cols=90 Identities=12% Similarity=0.312 Sum_probs=46.7 Q ss_pred CCCEEEECCCC-CCCCCCCHHHHHHHHHHHCCCCCCEEEEEE--CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC Q ss_conf 28326313874-451000023589998742025431158972--488157899877876436764896877811553101 Q gi|254780775|r 96 NNIKVRVIGNR-LSLDDDILCVLKEAEDQTRLNTGLNLFIAF--NYSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAK 172 (243) Q Consensus 96 ~~iki~~iGd~-~~lp~~i~~~i~~~e~~T~~n~~~~Lnia~--~Yggr~EI~~A~k~l~~~~~~~~~~~~~I~~~~i~~ 172 (243) +|++|-++||. .....++...+... ++.+.+|- +|-=..+++.-+++.+++.-....-.+++. T Consensus 2 ~glkia~vGD~~~rv~~S~~~~~~~~--------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~------ 67 (130) T 1vlv_A 2 KGVKVVFMGDTRNNVATSLMIACAKM--------GMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLE------ 67 (130) T ss_dssp TTCEEEEESCTTSHHHHHHHHHHHHT--------TCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHH------ T ss_pred CCCCEEEECCCCCEEEEHHHHHHHHC--------CCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCHH------ T ss_conf 44551464155550641378899876--------9849999611323542345445442001235533435999------ Q ss_pred CCCCCCCCCCCEEEECC---------CCEECCCCCCCHHC Q ss_conf 13367877652699457---------85213365640113 Q gi|254780775|r 173 YLDTSDVPDPDLIIRTG---------GEKRLSDFLLWQVA 203 (243) Q Consensus 173 ~L~~~~~p~pDLlIRTs---------Ge~RLSnFllwq~~ 203 (243) ..+++.|+|+=+. .+.|+..|..||+. T Consensus 68 ----eav~~aDviytd~w~~~~~~~~~~~~~~~~~~y~v~ 103 (130) T 1vlv_A 68 ----EALAGADVVYTDVWASMGEEDKEKERMALLKPYQVN 103 (130) T ss_dssp ----HHHTTCSEEEECCCC----------CHHHHGGGCBC T ss_pred ----HHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEC T ss_conf ----998346645544665411346669888762473356 No 59 >>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transferase; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A (A:1-276) Probab=32.48 E-value=28 Score=16.14 Aligned_cols=134 Identities=16% Similarity=0.153 Sum_probs=68.4 Q ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHC---------CCCCHHHH Q ss_conf 028326313874451000023589998742025431158972488157899877876436764---------89687781 Q gi|254780775|r 95 KNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIES---------GSVCSHDV 165 (243) Q Consensus 95 ~~~iki~~iGd~~~lp~~i~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~l~~~~~~---------~~~~~~~I 165 (243) +.++.+--||..+.-...+++.+ ..++.-+++--+-..-+||.+|+..+...-.. -..-++++ T Consensus 122 ~~~v~~~KI~S~~~~n~~LL~~~--------a~tgkPvilstG~~t~~ei~~Av~~i~~~g~~~viLhC~s~yp~~~~~~ 193 (276) T 2wqp_A 122 RXDIPAYKIGSGECNNYPLIKLV--------ASFGKPIILSTGXNSIESIKKSVEIIREAGVPYALLHCTNIYPTPYEDV 193 (276) T ss_dssp HHTCSCEEECGGGTTCHHHHHHH--------HTTCSCEEEECTTCCHHHHHHHHHHHHHHTCCEEEEECCCCSSCCGGGC T ss_pred CCCCCHHCCCCCCCCCHHHHHHH--------HHCCCCEEECCCCCCCCCCCCEEEEHHHCCCCCEEEEEECCCCCCCCCH T ss_conf 33656400033001333887656--------7506740102443221010000000120266643788506886532110 Q ss_pred HHHHHCCCCCCCCCCCCCEEEECCCCEECCCCCCCH-HC-CC---EEEEC---CCCCCC----CCHHHHHHHHHHHHHCC Q ss_conf 155310113367877652699457852133656401-13-55---38863---687888----89899999999986300 Q gi|254780775|r 166 DSSLIAKYLDTSDVPDPDLIIRTGGEKRLSDFLLWQ-VA-YS---EFVFI---PEYWPD----FSRELFFHALNQYNLRD 233 (243) Q Consensus 166 ~~~~i~~~L~~~~~p~pDLlIRTsGe~RLSnFllwq-~~-ys---El~F~---~~lWPd----f~~~dl~~~i~~y~~r~ 233 (243) |-..+...-.. . +.-+|=-|++.- ...+.-- .+ -+ |..|+ +.-+|| .+..+|...+..-.+.+ T Consensus 194 nL~~i~~lk~~--~--~~pVIG~sdHs~-~~~~~~aAva~GA~viekh~tld~~~~g~D~~~sl~p~el~~lv~~i~~~~ 268 (276) T 2wqp_A 194 RLGGXNDLSEA--F--PDAIIGLSDHTL-DNYACLGAVALGGSILERHFTDRXDRPGPDIVCSXNPDTFKELKQGAHALK 268 (276) T ss_dssp CTHHHHHHHHH--C--TTSEEEEECCSS-SSHHHHHHHHHTCCEEEEEBCSCTTCCSTTGGGCBCHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHH--H--CCCCEEECCCCC-CCHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 13443455554--1--335134045200-111347888442310254346530348887645333103668888766655 Q ss_pred CCCCCCCC Q ss_conf 50588465 Q gi|254780775|r 234 RRFGGLSK 241 (243) Q Consensus 234 RrfG~~~~ 241 (243) .-.|+-+| T Consensus 269 ~~lG~~~e 276 (276) T 2wqp_A 269 LARGGKKD 276 (276) T ss_dssp HHSSCCTT T ss_pred HHCCCCCC T ss_conf 31122122 No 60 >>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} (K:) Probab=32.19 E-value=37 Score=15.37 Aligned_cols=64 Identities=11% Similarity=0.131 Sum_probs=42.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCC Q ss_conf 77989999999999999999769868999720233653230124888898886310000100002832631387445100 Q gi|254780775|r 32 RCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDD 111 (243) Q Consensus 32 ~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iGd~~~lp~ 111 (243) ....+.++......+.+-|.++||+.|.++. .--+..| +.. +..+...+++|..|.|...+|- T Consensus 54 rk~t~~Aa~~aa~~~~~~~~~~gi~~v~i~i-kG~G~gr------------~~a----ik~l~~~glkI~~I~D~Tpiph 116 (129) T 2vqe_K 54 RKGTPYAAQLAALDAAKKAMAYGMQSVDVIV-RGTGAGR------------EQA----IRALQASGLQVKSIVDDTPVPH 116 (129) T ss_dssp GGGSHHHHHHHHHHHHHHHHTTTCCEEEEEE-ESCCTTH------------HHH----HHHHHTSSSEEEECEECCCCCS T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCEEEEEEE-ECCCCCH------------HHH----HHHHHCCCCEEEEEEECCCCCC T ss_conf 5554678999999999999981970999999-8777870------------788----4086538878999998899998 Q ss_pred C Q ss_conf 0 Q gi|254780775|r 112 D 112 (243) Q Consensus 112 ~ 112 (243) + T Consensus 117 n 117 (129) T 2vqe_K 117 N 117 (129) T ss_dssp S T ss_pred C T ss_conf 9 No 61 >>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} (A:153-274) Probab=31.71 E-value=35 Score=15.57 Aligned_cols=90 Identities=18% Similarity=0.264 Sum_probs=45.8 Q ss_pred CCCEEEECCCC-CCCCCCCHHHHHHHHHHHCCCCCCEEEEEEC--CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC Q ss_conf 28326313874-4510000235899987420254311589724--88157899877876436764896877811553101 Q gi|254780775|r 96 NNIKVRVIGNR-LSLDDDILCVLKEAEDQTRLNTGLNLFIAFN--YSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAK 172 (243) Q Consensus 96 ~~iki~~iGd~-~~lp~~i~~~i~~~e~~T~~n~~~~Lnia~~--Yggr~EI~~A~k~l~~~~~~~~~~~~~I~~~~i~~ 172 (243) .|++|-++||. .+...++...+... ++.+.++-+ |.=..+++..+++.+++.-......++ +. T Consensus 2 ~g~ki~~vGd~~~rv~~S~~~~~~~~--------g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~i~~~~~-----~~- 67 (122) T 1dxh_A 2 HDISYAYLGDARNNMGNSLLLIGAKL--------GMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTED-----PK- 67 (122) T ss_dssp GGCEEEEESCCSSHHHHHHHHHHHHT--------TCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESC-----HH- T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC--------CCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECC-----HH- T ss_conf 68489980787640799999999876--------99899988953488989999999999973998999869-----99- Q ss_pred CCCCCCCCCCCEEEECC-------C---CEECCCCCCCHHC Q ss_conf 13367877652699457-------8---5213365640113 Q gi|254780775|r 173 YLDTSDVPDPDLIIRTG-------G---EKRLSDFLLWQVA 203 (243) Q Consensus 173 ~L~~~~~p~pDLlIRTs-------G---e~RLSnFllwq~~ 203 (243) ..+++.|+++=+. + ++|.+.|..||+. T Consensus 68 ----ea~~~aDviy~~~w~~~~~~~~~~~~~~~~~~~y~i~ 104 (122) T 1dxh_A 68 ----EAVKGVDFVHTDVWVSMGEPVEAWGERIKELLPYQVN 104 (122) T ss_dssp ----HHTTTCSEEEECCCSCSSSCGGGCHHHHHHHGGGCBC T ss_pred ----HHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHCCEEH T ss_conf ----9828898994410762365304378999877411161 No 62 >>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefaciens STR. C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} (A:1-280) Probab=31.29 E-value=38 Score=15.28 Aligned_cols=104 Identities=13% Similarity=0.109 Sum_probs=68.2 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHH Q ss_conf 99999999999976986899972023365323012488889888631000010000283263138744510000235899 Q gi|254780775|r 40 IEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKE 119 (243) Q Consensus 40 ~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~ 119 (243) .+.+.+.++|+.+.|+.-+.+-.-+.|.+.-+.+|-..+++...+......+-+ --+| ...+.+.+.. T Consensus 54 ~~~~~~~i~~li~~Gv~Gi~i~Gs~GE~~~Ls~eEr~~l~~~~~~~~~~r~~vi-------~g~~-----~~st~~~i~~ 121 (280) T 2r8w_A 54 IEAFSALIARLDAAEVDSVGILGSTGIYXYLTREERRRAIEAAATILRGRRTLX-------AGIG-----ALRTDEAVAL 121 (280) T ss_dssp HHHHHHHHHHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEE-------EEEC-----CSSHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHHHHHCCCCCCC-------CCCC-----HHHHHHHHHH T ss_conf 999999999999779999997820655424899999999999999731454201-------2331-----0257788899 Q ss_pred HHHHHCCCCCCEEEEEECC--CHHHHHHHHHHHHHHHH Q ss_conf 9874202543115897248--81578998778764367 Q gi|254780775|r 120 AEDQTRLNTGLNLFIAFNY--SSRDEISRAIKNIFQDI 155 (243) Q Consensus 120 ~e~~T~~n~~~~Lnia~~Y--ggr~EI~~A~k~l~~~~ 155 (243) ++..-...-...+-+.-.| .+.++|.+-.+.+++.+ T Consensus 122 a~~A~~~G~d~vlv~pP~~~~~~~~~i~~~~~~ia~a~ 159 (280) T 2r8w_A 122 AKDAEAAGADALLLAPVSYTPLTQEEAYHHFAAVAGAT 159 (280) T ss_dssp HHHHHHHTCSEEEECCCCSSCCCHHHHHHHHHHHHHHC T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC T ss_conf 87620345432221223345655236676654555412 No 63 >>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans} (A:1-110) Probab=30.67 E-value=39 Score=15.21 Aligned_cols=21 Identities=29% Similarity=0.616 Sum_probs=19.0 Q ss_pred HHHHHHHHHHHHCCCCEEEEE Q ss_conf 999999999997698689997 Q gi|254780775|r 41 EVFNEIVAAAAEVGIKNLTIF 61 (243) Q Consensus 41 ~~l~~ii~~~~~~gI~~lTvy 61 (243) +.-.++++.|.++||+++.+| T Consensus 16 eiA~Riirt~~elgi~tvavy 36 (110) T 2dzd_A 16 EIAIRVFRACTELGIRTVAIY 36 (110) T ss_dssp HHHHHHHHHHHHHTCEEEEEE T ss_pred HHHHHHHHHHHHCCCEEEEEE T ss_conf 999999999998799699993 No 64 >>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, 4Fe-4S, iron-sulfur, metal-binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} (A:269-343,A:407-505) Probab=30.67 E-value=10 Score=18.90 Aligned_cols=36 Identities=3% Similarity=-0.116 Sum_probs=26.4 Q ss_pred HHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 87420254311589724881578998778764367648968 Q gi|254780775|r 121 EDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVC 161 (243) Q Consensus 121 e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~l~~~~~~~~~~ 161 (243) ++.+-..++..|++|+.||. +.+++++++++++..+ T Consensus 124 ~~~~~~~~~~~l~~av~~G~-----~niq~lv~~lk~g~~~ 159 (174) T 3c8y_A 124 KEAEVEINNNKYNVAVINGA-----SNLFKFMKSGMINEKQ 159 (174) T ss_dssp EEEEEEETTEEEEEEEEESH-----HHHHHHHHTSGGGSSC T ss_pred EEEEEEECCEEEEEEEECHH-----HHHHHHHHHHHCCCCC T ss_conf 89999839869999997049-----9999999987459998 No 65 >>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A (A:146-274) Probab=30.57 E-value=39 Score=15.20 Aligned_cols=90 Identities=14% Similarity=0.268 Sum_probs=49.8 Q ss_pred CCCEEEECCCC-CCCCCCCHHHHHHHHHHHCCCCCCEEEEEE--CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC Q ss_conf 28326313874-451000023589998742025431158972--488157899877876436764896877811553101 Q gi|254780775|r 96 NNIKVRVIGNR-LSLDDDILCVLKEAEDQTRLNTGLNLFIAF--NYSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAK 172 (243) Q Consensus 96 ~~iki~~iGd~-~~lp~~i~~~i~~~e~~T~~n~~~~Lnia~--~Yggr~EI~~A~k~l~~~~~~~~~~~~~I~~~~i~~ 172 (243) .|+++-++||. .+...++...+... ++.+.+|- .|.-..++++-+++.+++.-......+++++ T Consensus 2 ~g~kv~~vGd~~~rv~~S~~~~~~~~--------g~~~~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~e----- 68 (129) T 2i6u_A 2 RGLRLSYFGDGANNMAHSLLLGGVTA--------GIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVTADAHA----- 68 (129) T ss_dssp TTCEEEEESCTTSHHHHHHHHHHHHT--------TCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEESCHHH----- T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC--------CCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECHHH----- T ss_conf 89889996798886014689888616--------93465147732347768888777777524874289841110----- Q ss_pred CCCCCCCCCCCEEEEC-------CC--CEECCCCCCCHHC Q ss_conf 1336787765269945-------78--5213365640113 Q gi|254780775|r 173 YLDTSDVPDPDLIIRT-------GG--EKRLSDFLLWQVA 203 (243) Q Consensus 173 ~L~~~~~p~pDLlIRT-------sG--e~RLSnFllwq~~ 203 (243) .+.+.|++.=+ ++ +.|+..|..||+. T Consensus 69 -----a~~~aDvvyt~~w~~~~~~~~~~~~~~~~~~y~v~ 103 (129) T 2i6u_A 69 -----AAAGADVLVTDTWTSMGQENDGLDRVKPFRPFQLN 103 (129) T ss_dssp -----HHTTCSEEEECCSSCTTCTTSCCCSSGGGGGGCBC T ss_pred -----CCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCH T ss_conf -----13596099972155311011013444332120224 No 66 >>1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana tabacum} (A:) Probab=29.88 E-value=40 Score=15.13 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=12.4 Q ss_pred ECCCHHHHHHHHHHHHHHHHHCC Q ss_conf 24881578998778764367648 Q gi|254780775|r 136 FNYSSRDEISRAIKNIFQDIESG 158 (243) Q Consensus 136 ~~Yggr~EI~~A~k~l~~~~~~~ 158 (243) +-+|+.+||.+.++++++....+ T Consensus 300 ~~~~t~eei~~~v~~~~~~~~~~ 322 (353) T 1j93_A 300 VLFGSKEFITNRINDTVKKAGKG 322 (353) T ss_dssp GGGSCHHHHHHHHHHHHHHHCSS T ss_pred HHCCCHHHHHHHHHHHHHHCCCC T ss_conf 87699999999999999963999 No 67 >>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho gluconate aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A (A:) Probab=27.95 E-value=44 Score=14.91 Aligned_cols=101 Identities=8% Similarity=-0.034 Sum_probs=68.7 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHH Q ss_conf 99999999999976986899972023365323012488889888631000010000283263138744510000235899 Q gi|254780775|r 40 IEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKE 119 (243) Q Consensus 40 ~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~ 119 (243) .+.+.+.++++.+.|+.-+.+...+-|.+.-+.+|-..+++...+.... ++-++| ...+.+.+.. T Consensus 19 ~~~~~~~i~~l~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~~----------~i~~~~-----~~s~~~~i~~ 83 (288) T 2nuw_A 19 VDALKTHAKNLLEKGIDAIFVNGTTGLGPALSKDEKRQNLNALYDVTHK----------LIFQVG-----SLNLNDVMEL 83 (288) T ss_dssp HHHHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHTTTCSC----------EEEECC-----CSCHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCEEEECEEHHHHHHCCHHHHHHHHHHHHHHCCC----------CCCCCC-----CCCCCCHHHH T ss_conf 9999999999998599999978422427758899999999965554023----------222222-----2222000445 Q ss_pred HHHHHCCCCCCEEEEEEC---CCHHHHHHHHHHHHHHHH Q ss_conf 987420254311589724---881578998778764367 Q gi|254780775|r 120 AEDQTRLNTGLNLFIAFN---YSSRDEISRAIKNIFQDI 155 (243) Q Consensus 120 ~e~~T~~n~~~~Lnia~~---Yggr~EI~~A~k~l~~~~ 155 (243) +...-+..-.-.+.+.-. ..++++|++-.+.+++.. T Consensus 84 ~~~a~~~Ga~~~~~~~P~~~~~~~~~~i~~~~~~ia~a~ 122 (288) T 2nuw_A 84 VKFSNEMDILGVSSHSPYYFPRLPEKFLAKYYEEIARIS 122 (288) T ss_dssp HHHHHTSCCSEEEECCCCSSCSCCHHHHHHHHHHHHHHC T ss_pred HHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC T ss_conf 442001333342202233455035544665565540355 No 68 >>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} (B:310-418) Probab=27.12 E-value=45 Score=14.82 Aligned_cols=64 Identities=14% Similarity=0.142 Sum_probs=25.8 Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEECC Q ss_conf 31158972488157899877876436764-89687781155310113367877652699457852133 Q gi|254780775|r 129 GLNLFIAFNYSSRDEISRAIKNIFQDIES-GSVCSHDVDSSLIAKYLDTSDVPDPDLIIRTGGEKRLS 195 (243) Q Consensus 129 ~~~Lnia~~Yggr~EI~~A~k~l~~~~~~-~~~~~~~I~~~~i~~~L~~~~~p~pDLlIRTsGe~RLS 195 (243) ++.+-.+....+..+-.+..++.+++.-. +..-..+.|...+.+.+.. ..|||+|=+|-+++++ T Consensus 26 Gm~vv~~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~~~d~~el~~~i~~---~~pDliig~s~~~~~a 90 (109) T 1mio_B 26 GAIPKYVVTGTPGMKFQKEIDAMLAEAGIEGSKVKVEGDFFDVHQWIKN---EGVDLLISNTYGKFIA 90 (109) T ss_dssp TCEEEEEEESSCCHHHHHHHHHHHHTTTCCSCEEEESCBHHHHHHHHHH---SCCSEEEESGGGHHHH T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHH---CCCCEEEECCHHHHHH T ss_conf 9901488726897777899999998658988789979999999999974---4999999794589999 No 69 >>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase, ligase; 2.20A {Aquifex aeolicus VF5} (A:1-104) Probab=26.52 E-value=46 Score=14.75 Aligned_cols=21 Identities=33% Similarity=0.619 Sum_probs=18.8 Q ss_pred HHHHHHHHHHHHCCCCEEEEE Q ss_conf 999999999997698689997 Q gi|254780775|r 41 EVFNEIVAAAAEVGIKNLTIF 61 (243) Q Consensus 41 ~~l~~ii~~~~~~gI~~lTvy 61 (243) +.-.++++.|.++||+++.+| T Consensus 12 eiA~Ri~r~~~~lgi~~vavy 32 (104) T 1ulz_A 12 EIAVRIIRACKELGIPTVAIY 32 (104) T ss_dssp HHHHHHHHHHHHHTCCEEEEE T ss_pred HHHHHHHHHHHHCCCEEEEEC T ss_conf 999999999998599699987 No 70 >>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A* (A:1-107) Probab=24.99 E-value=49 Score=14.57 Aligned_cols=21 Identities=38% Similarity=0.545 Sum_probs=18.7 Q ss_pred HHHHHHHHHHHHCCCCEEEEE Q ss_conf 999999999997698689997 Q gi|254780775|r 41 EVFNEIVAAAAEVGIKNLTIF 61 (243) Q Consensus 41 ~~l~~ii~~~~~~gI~~lTvy 61 (243) +.-.++++.|.++||+++.+| T Consensus 14 eiA~Ri~rt~~elgi~~v~vy 34 (107) T 3hbl_A 14 EIAIRIFRAAAELDISTVAIY 34 (107) T ss_dssp HHHHHHHHHHHHTTCEEEEEE T ss_pred HHHHHHHHHHHHCCCEEEEEC T ss_conf 999999999998699399981 No 71 >>2w70_A Biotin carboxylase; ligase, inhibitor, ATP-binding, fatty acid biosynthesis, nucleotide-binding, lipid synthesis, ATP-grAsp domain; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 1dv2_A* 2gps_A 2gpw_A 3g8c_A* ... (A:1-105) Probab=24.48 E-value=50 Score=14.51 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=18.8 Q ss_pred HHHHHHHHHHHHCCCCEEEEE Q ss_conf 999999999997698689997 Q gi|254780775|r 41 EVFNEIVAAAAEVGIKNLTIF 61 (243) Q Consensus 41 ~~l~~ii~~~~~~gI~~lTvy 61 (243) +.-.++++.|.++||+.+.+| T Consensus 12 eiA~Riirt~~elgi~~vavy 32 (105) T 2w70_A 12 EIALRILRACKELGIKTVAVH 32 (105) T ss_dssp HHHHHHHHHHHHHTCEEEEEE T ss_pred HHHHHHHHHHHHCCCCEEEEC T ss_conf 999999999998699299984 No 72 >>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} (A:999-1151) Probab=24.40 E-value=51 Score=14.50 Aligned_cols=92 Identities=11% Similarity=0.130 Sum_probs=54.1 Q ss_pred CCCCCCHHHHHHHHHHHHHHH--HH-CCCC--CCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCH Q ss_conf 365323012488889888631--00-0010--000283263138744510000235899987420254311589724881 Q gi|254780775|r 66 NNWRRPVSEISELVKLIKSFL--KK-GFYS--LKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGLNLFIAFNYSS 140 (243) Q Consensus 66 eN~~R~~~Ev~~L~~l~~~~l--~~-~~~~--~~~~~iki~~iGd~~~lp~~i~~~i~~~e~~T~~n~~~~Lnia~~Ygg 140 (243) |-|.-.+.||..|+.+..-.. .+ .+.. ...+.+.+.|.-+-..-|..+...+......-.-...-.+.+.+.... T Consensus 53 DRFG~~P~ev~~Ll~~~~lk~~a~~lgi~~I~~~~~~i~i~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (153) T 2eyq_A 53 DRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSE 132 (153) T ss_dssp HHHCSCCHHHHHHHHHHHHHHHHHHHCCSCEEECSSEEEEECCSSCCCCHHHHHHHHHHCGGGEEEETTTEEEEECCCCS T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEEECCCCCCCHHHHHHHHHHCCCCEEECCCCEEEEEECCCC T ss_conf 87699979999999999999999976981898049869999778998899999999985888589879964899816899 Q ss_pred HHHHHHHHHHHHHHHHC Q ss_conf 57899877876436764 Q gi|254780775|r 141 RDEISRAIKNIFQDIES 157 (243) Q Consensus 141 r~EI~~A~k~l~~~~~~ 157 (243) ..++++.+.+++++... T Consensus 133 ~~~~l~~~~~~L~~l~~ 149 (153) T 2eyq_A 133 RKTRIEWVRQFMRELEE 149 (153) T ss_dssp HHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHH T ss_conf 79999999999999998 No 73 >>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); X-RAY crystallography, hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} (L:145-222,L:286-421) Probab=24.26 E-value=21 Score=16.91 Aligned_cols=37 Identities=16% Similarity=0.250 Sum_probs=26.7 Q ss_pred HHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCH Q ss_conf 874202543115897248815789987787643676489687 Q gi|254780775|r 121 EDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCS 162 (243) Q Consensus 121 e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~l~~~~~~~~~~~ 162 (243) +..+-+..+..|.+|+.||. +.+++++++++.+..+. T Consensus 127 ~~~~~~~~~~~l~~av~~G~-----~ni~~lv~~ik~~~~~y 163 (214) T 1hfe_L 127 KEATVNVGGTDVKVAVVHGA-----KRFKQVCDDVKAGKSPY 163 (214) T ss_dssp EEEEEEETTEEEEEEEEESG-----GGHHHHHHHHHTTCCCC T ss_pred CEEEEEECCCEEEEEEECCH-----HHHHHHHHHHHCCCCCC T ss_conf 01236656947999996473-----76999999985589986 No 74 >>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis} (A:) Probab=24.23 E-value=51 Score=14.48 Aligned_cols=22 Identities=9% Similarity=0.215 Sum_probs=13.6 Q ss_pred HHHHHHHHHHHCCCCEEEEEEC Q ss_conf 9999999999769868999720 Q gi|254780775|r 42 VFNEIVAAAAEVGIKNLTIFAF 63 (243) Q Consensus 42 ~l~~ii~~~~~~gI~~lTvyaf 63 (243) .+.+.++.+.++|...+-+... T Consensus 30 ~~~e~l~~~~~~G~~~vEl~~~ 51 (303) T 3l23_A 30 DVAANLRKVKDXGYSKLELAGY 51 (303) T ss_dssp CHHHHHHHHHHTTCCEEEECCE T ss_pred CHHHHHHHHHHHCCCEEEECCC T ss_conf 9999999999859998998677 No 75 >>2wcv_A L-fucose mutarotase; FUCU, ribose, pyranase, cytoplasm, isomerase, fucose metabolism, carbohydrate metabolism; HET: FUC; 1.90A {Escherichia coli} (A:) Probab=24.05 E-value=41 Score=15.06 Aligned_cols=57 Identities=14% Similarity=0.125 Sum_probs=32.1 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEECCCCCC Q ss_conf 488157899877876436764896877811553101133678776526994578521336564 Q gi|254780775|r 137 NYSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVPDPDLIIRTGGEKRLSDFLL 199 (243) Q Consensus 137 ~Yggr~EI~~A~k~l~~~~~~~~~~~~~I~~~~i~~~L~~~~~p~pDLlIRTsGe~RLSnFll 199 (243) +.+...+|.+..+.++.+.-. ....+.|.-..|.+. ..+...+||||-.+.-+|++| T Consensus 78 ~~~~~~~i~~~~~~~l~~~~~-~~~~~~i~h~~Fy~~-----~~~a~~VVrTGE~~pYaNiIL 134 (140) T 2wcv_A 78 GDTLDPEVERRYRNALSLQAP-CPDIIRINRFAFYER-----AQKAFAIVITGERAKYGNILL 134 (140) T ss_dssp TCCCCHHHHHHHHHHTTC--C-CCCCEEECHHHHHHH-----HTTSSEEEEECCCSTTCCEEE T ss_pred CCCCCCHHHHHHHHHHHHCCC-CCCEEECCHHHHHHH-----HHCCCEEEECCCCCCEEEEEE T ss_conf 776660689999999996289-983224379999998-----735879998899975458999 No 76 >>2r1i_A GCN5-related N-acetyltransferase; YP_831484.1, putative acetyltransferase, arthrobacter SP. FB24, acetyltransferase (GNAT) family; HET: MSE; 1.65A {Arthrobacter SP} (A:1-139) Probab=23.71 E-value=52 Score=14.42 Aligned_cols=16 Identities=19% Similarity=0.002 Sum_probs=9.3 Q ss_pred CCCCHHHHHHHHHHHH Q ss_conf 8889899999999986 Q gi|254780775|r 215 PDFSRELFFHALNQYN 230 (243) Q Consensus 215 Pdf~~~dl~~~i~~y~ 230 (243) |++...-+-..|..+. T Consensus 107 p~~rg~Gig~~L~~~~ 122 (139) T 2r1i_A 107 PGRRGHRLGSALLAAS 122 (139) T ss_dssp SSHHHHHHHHHHHHHH T ss_pred HHHCCCCCHHHHHHHH T ss_conf 8995997106799999 No 77 >>1dbf_A Protein (chorismate mutase); shikimate pathway; 1.30A {Bacillus subtilis} (A:1-115) Probab=23.66 E-value=44 Score=14.90 Aligned_cols=36 Identities=22% Similarity=0.359 Sum_probs=26.6 Q ss_pred EECCCHHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHH Q ss_conf 724881578998778764367-648968778115531 Q gi|254780775|r 135 AFNYSSRDEISRAIKNIFQDI-ESGSVCSHDVDSSLI 170 (243) Q Consensus 135 a~~Yggr~EI~~A~k~l~~~~-~~~~~~~~~I~~~~i 170 (243) .+.-..+++|..|++.+++++ +.+.++++||-.-.| T Consensus 11 Tv~~nt~e~I~~at~eLl~~ii~~N~l~~edIvSv~F 47 (115) T 1dbf_A 11 TVERDTEEEILQKTKQLLEKIIEENHTKPEDVVQMLL 47 (115) T ss_dssp ECSSCCHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEE T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEE T ss_conf 4387899999999999999999975999789799999 No 78 >>1xho_A Chorismate mutase; southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI, structural genomics; 2.20A {Clostridium thermocellum} (A:) Probab=22.81 E-value=54 Score=14.31 Aligned_cols=38 Identities=16% Similarity=0.275 Sum_probs=28.2 Q ss_pred EEEECCCHHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHH Q ss_conf 89724881578998778764367-648968778115531 Q gi|254780775|r 133 FIAFNYSSRDEISRAIKNIFQDI-ESGSVCSHDVDSSLI 170 (243) Q Consensus 133 nia~~Yggr~EI~~A~k~l~~~~-~~~~~~~~~I~~~~i 170 (243) -+.+.-..+++|..|++.|++++ +.+.++++||-.-.| T Consensus 38 AtTv~~Nt~e~I~~At~ELl~eii~~N~l~~edIvSv~F 76 (148) T 1xho_A 38 ATTVSDNTADEIVAETQKLLKEXAEKNGLEEDDIISIIF 76 (148) T ss_dssp EEECSSSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEE T ss_pred CEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEE T ss_conf 356287899999999999999999975999789899999 No 79 >>2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics, NPPSFA; 2.30A {Streptomyces coelicolor} (A:) Probab=21.99 E-value=56 Score=14.21 Aligned_cols=72 Identities=13% Similarity=0.035 Sum_probs=47.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC------CCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECC Q ss_conf 7989999999999999999769868999720233653------23012488889888631000010000283263138 Q gi|254780775|r 33 CAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWR------RPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIG 104 (243) Q Consensus 33 ~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~------R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iG 104 (243) ..-..+..+.+++.++.|..+|.+++.+..-....-. -+....+..++.+.+.+....+...+.|+++.+-- T Consensus 103 ~~~r~~~~~~~~~~i~~a~~lG~~~i~~~~g~~~~~~~~~~~~~~~~~~e~~~~~~~~~l~~~~~~a~~~gi~l~~E~ 180 (340) T 2zds_A 103 EGVRQRAAAEIKDTARAAARLGVDTVIGFTGSAIWHLVAXFPPAPESXIERGYQDFADRWNPILDVFDAEGVRFAHEV 180 (340) T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSEEEECCCCSSGGGTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEC T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC T ss_conf 689999999999999999972998588603555677677888642010599999999999999999998399568854 No 80 >>3g8r_A Probable spore coat polysaccharide biosynthesis protein E; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472} (A:1-264) Probab=21.56 E-value=58 Score=14.15 Aligned_cols=163 Identities=13% Similarity=0.021 Sum_probs=86.9 Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHH Q ss_conf 99999999999997698689997202336532301248888988863100001000028326313874451000023589 Q gi|254780775|r 39 GIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLK 118 (243) Q Consensus 39 G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~ 118 (243) |.+-+.++.++|.+.|+..+|=- | .. ...+.+.+.++.+--||..+.....+++.+ T Consensus 76 ~~~~~~~L~~~~~~~Gl~~~~~~------~--~~---------------~~~~~l~~~~v~~~kIgS~~~~n~~ll~~~- 131 (264) T 3g8r_A 76 QPEQXQKLVAEXKANGFKAICTP------F--DE---------------ESVDLIEAHGIEIIKIASCSFTDWPLLERI- 131 (264) T ss_dssp CHHHHHHHHHHHHHTTCEEEEEE------C--SH---------------HHHHHHHHTTCCEEEECSSSTTCHHHHHHH- T ss_pred CHHHHHHHHHHHCCCCEEECCCC------C--CC---------------HHHEECCCCCCHHHHHHHHHHHHHHHHHHH- T ss_conf 47776777654202220002342------2--12---------------222001233401221201335678898764- Q ss_pred HHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH---------CCCCCHHHHHHHHHCCCCCCCCCCCCCEEEECC Q ss_conf 99874202543115897248815789987787643676---------489687781155310113367877652699457 Q gi|254780775|r 119 EAEDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIE---------SGSVCSHDVDSSLIAKYLDTSDVPDPDLIIRTG 189 (243) Q Consensus 119 ~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~l~~~~~---------~~~~~~~~I~~~~i~~~L~~~~~p~pDLlIRTs 189 (243) ...+.-+.+.-+.++-+||.+|+.-+.+... .-...++++|-..+...-.. .|.| +|=-| T Consensus 132 -------a~~~kPv~ls~G~~t~~ei~~ave~~~~gn~~i~l~hc~s~yp~~~~~~nL~~i~~lk~~--~~~p--VIg~s 200 (264) T 3g8r_A 132 -------ARSDKPVVASTAGARREDIDKVVSFXLHRGKDLTIXHCVAEYPTPDDHLHLARIKTLRQQ--YAGV--RIGYS 200 (264) T ss_dssp -------HTSCSCEEEECTTCCHHHHHHHHHHHHTTTCCEEEEECCCCSSCCGGGCCTTHHHHHHHH--CTTS--EEEEE T ss_pred -------HCCCCCCCCCCHHHHHHHHCCCHHHHHCCCCEEEEEECCCCCCCHHHHCCHHHHHHHHHH--CCCC--CEEEE T ss_conf -------023321112320134431012011221268614886415777520543012334445441--0233--20220 Q ss_pred CCEECCCCCC-CH--HC------CCEEEEC-CCCCC--C---CCHHHHHHHHHHHHHCCCCCCCC Q ss_conf 8521336564-01--13------5538863-68788--8---89899999999986300505884 Q gi|254780775|r 190 GEKRLSDFLL-WQ--VA------YSEFVFI-PEYWP--D---FSRELFFHALNQYNLRDRRFGGL 239 (243) Q Consensus 190 Ge~RLSnFll-wq--~~------ysEl~F~-~~lWP--d---f~~~dl~~~i~~y~~r~RrfG~~ 239 (243) ++ |+-+. .. .+ --|-.|+ ++.|+ | .+..+|...+..-.+.+.-.|.- T Consensus 201 dH---s~~~~~~~~~~Ava~ga~~iEkH~tld~~~~~d~~~sl~p~e~~~~v~~ir~~~~~~g~~ 262 (264) T 3g8r_A 201 TH---EDPDLXEPIXLAVAQGATVFEKHVGLPTDQYGINNYSANPEQVRRWLAAAARALAXLGDG 262 (264) T ss_dssp EC---CCSSCCHHHHHHHHTTCCEEEEEBCCCBTTBCCCTTCBCHHHHHHHHHHHHHHHHHHCCT T ss_pred CC---CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 22---267643112566776678987233334566897144200255677777654431203442 No 81 >>1sqh_A Hypothetical protein CG14615-PA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Drosophila melanogaster} (A:158-287) Probab=21.27 E-value=52 Score=14.43 Aligned_cols=35 Identities=14% Similarity=0.068 Sum_probs=21.8 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 87798999999999999999976986899972023 Q gi|254780775|r 31 PRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSI 65 (243) Q Consensus 31 ~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~ 65 (243) +...|.-.|..-+..++++|.+.|++.+.+.+.+. T Consensus 84 p~~rg~G~g~~ll~~~~~~a~~~g~~~i~l~v~~~ 118 (130) T 1sqh_A 84 PKAERRGLGGLLAAAXSREIARGEEITLTAWIVAT 118 (130) T ss_dssp GGGCSSSHHHHHHHHHHHHHHHHSCSCEEEEEETT T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCC T ss_conf 02169989999999999999987998899999188 No 82 >>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} (A:) Probab=21.18 E-value=59 Score=14.10 Aligned_cols=24 Identities=13% Similarity=0.057 Sum_probs=13.4 Q ss_pred HHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 999999999997698689997202 Q gi|254780775|r 41 EVFNEIVAAAAEVGIKNLTIFAFS 64 (243) Q Consensus 41 ~~l~~ii~~~~~~gI~~lTvyafS 64 (243) +...++.+.|.+.|++.+++-.+. T Consensus 51 ~~~~~~~~~~~~~gl~~~~~~~~~ 74 (264) T 1yx1_A 51 PDTEALTAAIQLQGLECVFSSPLE 74 (264) T ss_dssp CCHHHHHHHHHHTTCEEEEEEEEE T ss_pred CHHHHHHHHHHHCCCEEEEECCCC T ss_conf 019999999998599599963522 No 83 >>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} (A:) Probab=20.63 E-value=60 Score=14.03 Aligned_cols=101 Identities=13% Similarity=-0.001 Sum_probs=69.5 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHH Q ss_conf 99999999999976986899972023365323012488889888631000010000283263138744510000235899 Q gi|254780775|r 40 IEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKE 119 (243) Q Consensus 40 ~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~ 119 (243) .+.+.+.++++.+.||.-+.+.+.+-|.+.=+.+|...+++...+... -++-.+|. ..+.+.+.. T Consensus 19 ~~~~~~~~~~l~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~----------~~i~~v~~-----~s~~~~i~~ 83 (293) T 1w3i_A 19 KEKLKIHAENLIRKGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDVTN----------KIIFQVGG-----LNLDDAIRL 83 (293) T ss_dssp HHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHTTCS----------CEEEECCC-----SCHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCEEEECEECHHHHHCCHHHHHHHHHHHHHHHH----------HHHCCCCC-----CCHHHHHHH T ss_conf 999999999999869998997730053555889999999998653102----------23101100-----001346654 Q ss_pred HHHHHCCCCCCEEEEEE-CC--CHHHHHHHHHHHHHHHH Q ss_conf 98742025431158972-48--81578998778764367 Q gi|254780775|r 120 AEDQTRLNTGLNLFIAF-NY--SSRDEISRAIKNIFQDI 155 (243) Q Consensus 120 ~e~~T~~n~~~~Lnia~-~Y--ggr~EI~~A~k~l~~~~ 155 (243) ++..-+..-...+-+.- .| .++++|.+-.+.+++.+ T Consensus 84 a~~a~~~Gad~~l~~~P~~~~~~~~~~i~~~~~~i~~a~ 122 (293) T 1w3i_A 84 AKLSKDFDIVGIASYAPYYYPRMSEKHLVKYFKTLCEVS 122 (293) T ss_dssp HHHGGGSCCSEEEEECCCSCSSCCHHHHHHHHHHHHHHC T ss_pred HHHHHHHCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCC T ss_conf 355553113243456761110010889999999988621 No 84 >>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA SAP; 2.00A {Rhizobium etli cfn 42} (A:1-124) Probab=20.47 E-value=61 Score=14.01 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=18.9 Q ss_pred HHHHHHHHHHHHCCCCEEEEE Q ss_conf 999999999997698689997 Q gi|254780775|r 41 EVFNEIVAAAAEVGIKNLTIF 61 (243) Q Consensus 41 ~~l~~ii~~~~~~gI~~lTvy 61 (243) +.-.++++.|.++||+++.+| T Consensus 24 eiA~Ri~rt~~elgi~~vai~ 44 (124) T 2qf7_A 24 EIAIRVFRAANELGIKTVAIW 44 (124) T ss_dssp HHHHHHHHHHHHTTCEEEEEE T ss_pred HHHHHHHHHHHHCCCEEEEEE T ss_conf 999999999998499299991 No 85 >>3ler_A DHDPS, dihydrodipicolinate synthase; TIM barrel, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: MCL MSE; 1.84A {Campylobacter jejuni subsp} (A:) Probab=20.18 E-value=61 Score=13.97 Aligned_cols=104 Identities=14% Similarity=0.115 Sum_probs=69.3 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE-CCCCCCCCCCCHHHHH Q ss_conf 999999999999769868999720233653230124888898886310000100002832631-3874451000023589 Q gi|254780775|r 40 IEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRV-IGNRLSLDDDILCVLK 118 (243) Q Consensus 40 ~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~-iGd~~~lp~~i~~~i~ 118 (243) .+.+.+.++++.+.||.-+.+...+.|.+.=+.+|-..+++...+.... .++.+-+ +| ...+.+.+. T Consensus 27 ~~~~~~~i~~l~~~Gv~gi~~~Gs~GE~~~Ls~~Er~~v~~~~~~~~~~-------~~~~vi~gv~-----~~~t~~~i~ 94 (301) T 3ler_A 27 EQSYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKG-------TKVKVLAGAG-----SNATHEAVG 94 (301) T ss_dssp HHHHHHHHHHHHTTTCCEEETTSTTTTGGGSCHHHHHHHHHHHHHHHTT-------SSCEEEEECC-----CSSHHHHHH T ss_pred HHHHHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHHHHHCC-------CCCEEEEECC-----CCHHHHHHH T ss_conf 9999999999997599989978122026658999999999999998558-------9982999788-----520999999 Q ss_pred HHHHHHCCCCCCEEEEEECC--CHHHHHHHHHHHHHHHH Q ss_conf 99874202543115897248--81578998778764367 Q gi|254780775|r 119 EAEDQTRLNTGLNLFIAFNY--SSRDEISRAIKNIFQDI 155 (243) Q Consensus 119 ~~e~~T~~n~~~~Lnia~~Y--ggr~EI~~A~k~l~~~~ 155 (243) .+...-+..-...+-+.-.| .+.++|.+-.+.+++.+ T Consensus 95 ~a~~A~~~Gad~ilv~~P~~~~~~~~~i~~~~~~i~~a~ 133 (301) T 3ler_A 95 LAKFAKEHGADGILSVAPYYNKPTQQGLYEHYKAIAQSV 133 (301) T ss_dssp HHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC T ss_pred HHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCC T ss_conf 999999759998873588888989999999999998616 Done!