Query gi|254780775|ref|YP_003065188.1| undecaprenyl diphosphate synthase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 243
No_of_seqs 140 out of 2926
Neff 6.6
Searched_HMMs 23785
Date Mon May 30 13:38:10 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780775.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vg3_A Undecaprenyl pyrophosph 100.0 0 0 637.0 23.0 237 3-239 48-284 (284)
2 1ueh_A Undecaprenyl pyrophosph 100.0 0 0 619.9 22.9 239 4-242 11-249 (253)
3 1f75_A Undecaprenyl pyrophosph 100.0 0 0 613.5 21.3 237 3-239 13-249 (249)
4 2d2r_A Undecaprenyl pyrophosph 100.0 0 0 610.1 20.3 233 8-241 13-245 (245)
5 2vg0_A Short-chain Z-isoprenyl 100.0 0 0 575.7 22.6 222 9-232 1-227 (227)
6 1i60_A IOLI protein; beta barr 90.3 1 4.3E-05 24.3 7.0 66 33-102 76-141 (278)
7 2hk0_A D-psicose 3-epimerase; 89.1 1.2 5.2E-05 23.8 6.7 117 36-153 102-223 (309)
8 3cqj_A L-ribulose-5-phosphate 80.4 3.3 0.00014 21.1 7.0 83 15-103 84-166 (295)
9 2qul_A D-tagatose 3-epimerase; 77.2 4.1 0.00017 20.5 6.1 70 33-102 80-151 (290)
10 3kws_A Putative sugar isomeras 67.3 7 0.00029 19.0 6.7 70 32-102 95-164 (287)
11 3dx5_A Uncharacterized protein 66.2 7.4 0.00031 18.9 6.2 26 37-62 80-105 (286)
12 2zds_A Putative DNA-binding pr 57.2 11 0.00045 17.9 7.1 67 36-102 106-178 (340)
13 2ksn_A Ubiquitin domain-contai 55.6 4.6 0.0002 20.1 1.9 27 135-161 49-75 (137)
14 2zvr_A Uncharacterized protein 52.7 13 0.00053 17.4 5.2 67 34-104 106-172 (290)
15 2wkj_A N-acetylneuraminate lya 48.7 14 0.00061 17.0 10.2 105 40-156 31-137 (303)
16 2j6v_A UV endonuclease, UVDE; 45.1 16 0.00069 16.7 8.0 111 36-149 56-180 (301)
17 1ja1_A NADPH-cytochrome P450 r 43.4 17 0.00073 16.5 4.4 16 59-74 77-92 (622)
18 1wle_A Seryl-tRNA synthetase; 41.0 14 0.00059 17.1 2.5 84 143-231 120-230 (501)
19 3fkr_A L-2-keto-3-deoxyarabona 40.8 19 0.0008 16.2 9.2 103 40-154 28-135 (309)
20 3cpr_A Dihydrodipicolinate syn 37.6 21 0.0009 15.9 10.3 104 40-155 36-141 (304)
21 2dq0_A Seryl-tRNA synthetase; 37.0 19 0.00079 16.3 2.6 54 142-195 72-135 (455)
22 2rfg_A Dihydrodipicolinate syn 35.2 23 0.00098 15.7 8.8 103 40-155 20-125 (297)
23 3d0c_A Dihydrodipicolinate syn 32.7 26 0.0011 15.4 7.6 102 40-155 32-136 (314)
24 2bpo_A CPR, P450R, NADPH-cytoc 30.7 28 0.0012 15.2 3.7 16 214-229 301-316 (682)
25 3ktc_A Xylose isomerase; putat 29.3 29 0.0012 15.1 6.0 30 34-63 100-129 (333)
26 1xxx_A DHDPS, dihydrodipicolin 29.3 29 0.0012 15.1 9.9 104 40-155 34-139 (303)
27 2v1l_A Hypothetical protein; p 28.3 30 0.0013 15.0 2.5 35 176-217 54-90 (148)
28 2w56_A VC0508; unknown functio 28.0 31 0.0013 14.9 3.9 36 176-218 54-91 (147)
29 1vk1_A Conserved hypothetical 27.6 14 0.00057 17.2 0.6 26 16-64 66-91 (242)
30 2h7b_A Core-binding factor, ML 26.1 33 0.0014 14.7 3.0 40 142-184 25-64 (105)
31 1xky_A Dihydrodipicolinate syn 25.8 34 0.0014 14.7 9.8 103 40-155 32-137 (301)
32 3eb2_A Putative dihydrodipicol 25.7 34 0.0014 14.7 7.6 104 40-155 24-129 (300)
33 3flu_A DHDPS, dihydrodipicolin 24.7 35 0.0015 14.5 9.9 103 40-155 27-132 (297)
34 2yxg_A DHDPS, dihydrodipicolin 24.7 35 0.0015 14.5 9.7 104 40-155 20-125 (289)
35 1acf_A Profilin I; protein bin 24.4 36 0.0015 14.5 2.6 26 59-85 27-52 (125)
36 2ehh_A DHDPS, dihydrodipicolin 24.3 36 0.0015 14.5 9.7 104 40-155 20-125 (294)
37 3noe_A DAP-A, dihydrodipicolin 24.1 36 0.0015 14.5 9.7 104 40-155 21-126 (292)
38 1yr1_A Divib, FTSQ, cell-divis 23.2 30 0.0013 15.0 1.7 17 170-186 68-84 (119)
39 1ddz_A Carbonic anhydrase; alp 22.0 9.4 0.0004 18.2 -1.1 34 178-211 317-350 (496)
40 2w3q_A Carbonic anhydrase 2; l 22.0 9.5 0.0004 18.2 -1.1 16 14-29 34-49 (243)
41 1fvp_A Flavoprotein 390, FP390 21.5 41 0.0017 14.1 3.5 138 10-156 70-222 (231)
42 1xho_A Chorismate mutase; sout 21.3 41 0.0017 14.1 3.2 37 133-169 38-75 (148)
43 3eyx_A Carbonic anhydrase; ros 20.9 10 0.00043 18.0 -1.1 13 16-28 15-27 (216)
44 2ob5_A AGR_C_3656P, hypothetic 20.5 42 0.0017 14.1 2.0 53 143-200 94-146 (153)
45 3gza_A Putative alpha-L-fucosi 20.0 22 0.00093 15.8 0.5 24 40-65 108-131 (443)
No 1
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, cell shape, cell division; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A
Probab=100.00 E-value=0 Score=636.96 Aligned_cols=237 Identities=37% Similarity=0.706 Sum_probs=232.0
Q ss_pred HHHCCCCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 35206898826999848851899975998779899999999999999997698689997202336532301248888988
Q gi|254780775|r 3 ASMMSSSPPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLI 82 (243)
Q Consensus 3 ~~~~~~~~P~HIaiImDGNrRwAk~~gl~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~ 82 (243)
..|.+.++|+|||||||||||||+++|++..+||++|++++.++++||.++||++|||||||+|||+|+++||++||+|+
T Consensus 48 ~~~~~~~lP~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~l~~ii~~~~~~GI~~LTvYaFStEN~~R~~~EV~~L~~L~ 127 (284)
T 2vg3_A 48 PRIPADRLPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLMGFN 127 (284)
T ss_dssp CCCCTTTSCSEEEEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEETTGGGSCHHHHHHHHHHH
T ss_pred CCCCCCCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHCCCCHHHHHHHHHH
T ss_conf 98980018884799644868999877997779999999999999999998699789999752234235648999999999
Q ss_pred HHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 86310000100002832631387445100002358999874202543115897248815789987787643676489687
Q gi|254780775|r 83 KSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCS 162 (243)
Q Consensus 83 ~~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~l~~~~~~~~~~~ 162 (243)
..++.+..+.+.+++|++++|||++.||+++++.+.++|+.|++|++++||||++||||+||++|++++++++..+..++
T Consensus 128 ~~~l~~~~~~~~~~~irvr~iGd~~~lp~~l~~~i~~~e~~T~~n~~l~Lniai~YgGR~EIv~A~k~l~~~~~~~~~~~ 207 (284)
T 2vg3_A 128 RDVVRRRRDTLKKLGVRIRWVGSRPRLWRSVINELAVAEEMTKSNDVITINYCVNYGGRTEITEATREIAREVAAGRLNP 207 (284)
T ss_dssp HHHHHHHHHHHHHTTEEEEEESCCTTSCHHHHHHHHHHHHHHTTCCSEEEEEEEEECHHHHHHHHHHHHHHHHHTTSSCG
T ss_pred HHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 99999998888873754131245556866765323201010245654237888424738899999999999876344667
Q ss_pred HHHHHHHHCCCCCCCCCCCCCEEEECCCCEECCCCCCCHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 78115531011336787765269945785213365640113553886368788889899999999986300505884
Q gi|254780775|r 163 HDVDSSLIAKYLDTSDVPDPDLIIRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFGGL 239 (243)
Q Consensus 163 ~~I~~~~i~~~L~~~~~p~pDLlIRTsGe~RLSnFllwq~~ysEl~F~~~lWPdf~~~dl~~~i~~y~~r~RrfG~~ 239 (243)
++|+++.|+++|+++++||||||||||||+|||||||||++||||||+++|||||+..||.+||.+|++|+|||||-
T Consensus 208 e~i~~~~i~~~L~~~~~pdpDLlIRTsGe~RLSnFLlwQ~ayaEl~F~~~lWPdf~~~dl~~ai~~y~~R~RRfG~a 284 (284)
T 2vg3_A 208 ERITESTIARHLQRPDIPDVDLFLRTSGEQRSSNFMLWQAAYAEYIFQDKLWPDYDRRDLWAACEEYASRTRRFGSA 284 (284)
T ss_dssp GGCCHHHHHHHSSSTTCCCCSEEEECTTCCCCTTTTTTTTTTCEEEECCSCGGGCCHHHHHHHHHHHHHSCCCSSCC
T ss_pred HHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 67589999975268998898758864786202452102104604896778886599999999999998600657899
No 2
>1ueh_A Undecaprenyl pyrophosphate synthase; parallel alpha-beta, rossmann-like fold, transferase; HET: OXN; 1.73A {Escherichia coli} SCOP: c.101.1.1 PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1x09_A* 1x08_A*
Probab=100.00 E-value=0 Score=619.90 Aligned_cols=239 Identities=37% Similarity=0.683 Sum_probs=232.3
Q ss_pred HHCCCCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf 52068988269998488518999759987798999999999999999976986899972023365323012488889888
Q gi|254780775|r 4 SMMSSSPPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIK 83 (243)
Q Consensus 4 ~~~~~~~P~HIaiImDGNrRwAk~~gl~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~ 83 (243)
.-.|+..|+|||||||||||||+++|++...||++|++++.+++.||.++||++|||||||+|||+||+.||++||+++.
T Consensus 11 ~~~~~~~P~HIaiImDGNrRwAk~~g~~~~~Gh~~G~~~l~eiv~wc~~lGIk~lTvYafS~EN~~R~~~Ev~~L~~l~~ 90 (253)
T 1ueh_A 11 EKLPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFV 90 (253)
T ss_dssp --CCTTCCCEEEEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEC--------------CHHHH
T ss_pred HHCCCCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHCCCHHHHHHHHHHHH
T ss_conf 34789999889995348789998778974389999999999999999976998899986053010277167999999999
Q ss_pred HHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 63100001000028326313874451000023589998742025431158972488157899877876436764896877
Q gi|254780775|r 84 SFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCSH 163 (243)
Q Consensus 84 ~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~l~~~~~~~~~~~~ 163 (243)
.++........+++|+|+||||++.||+++++.+..+|+.|++|++++||||++||||+||++|+++++++++++.++++
T Consensus 91 ~~l~~~~~~~~~~~iki~viGd~~~lp~~~~~~i~~~e~~T~~n~~~~Lnia~~YgGr~EIv~A~k~~~~~~~~~~~~~~ 170 (253)
T 1ueh_A 91 WALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPD 170 (253)
T ss_dssp HHHHHTHHHHHHTTCEEEEESCCTTSCHHHHHHHHHHHHHHTTCCSCEEEEEESCCHHHHHHHHHHHHHHHHHTTSCCGG
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 99999888787619369999463104578899876789864699981589985677689999999999999981899978
Q ss_pred HHHHHHHCCCCCCCCCCCCCEEEECCCCEECCCCCCCHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 8115531011336787765269945785213365640113553886368788889899999999986300505884656
Q gi|254780775|r 164 DVDSSLIAKYLDTSDVPDPDLIIRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFGGLSKK 242 (243)
Q Consensus 164 ~I~~~~i~~~L~~~~~p~pDLlIRTsGe~RLSnFllwq~~ysEl~F~~~lWPdf~~~dl~~~i~~y~~r~RrfG~~~~~ 242 (243)
+|+++.|.++|+++..||||||||||||+|||||||||++||||||++++||||+..||..||.+|++|+|||||+.-+
T Consensus 171 ~i~~~~i~~~L~~~~~pdpDLlIRTsGe~RLSnFLlWQ~~ysEl~F~~~~WPdf~~~d~~~al~~y~~r~RrfGk~~~~ 249 (253)
T 1ueh_A 171 QIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRERRFGGTEPG 249 (253)
T ss_dssp GCCHHHHHTTSTTTTSCCCCEEEECSSCCSCTTSSCGGGTTCEEEECCSCGGGCCHHHHHHHHHHHHTCC---------
T ss_pred HHHHHHHHHHHCCCCCCCCCEEEECCCCEECCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 8778888876443899996458626996013466421303434897788886699999999999997414648999977
No 3
>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1
Probab=100.00 E-value=0 Score=613.53 Aligned_cols=237 Identities=43% Similarity=0.790 Sum_probs=233.0
Q ss_pred HHHCCCCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 35206898826999848851899975998779899999999999999997698689997202336532301248888988
Q gi|254780775|r 3 ASMMSSSPPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLI 82 (243)
Q Consensus 3 ~~~~~~~~P~HIaiImDGNrRwAk~~gl~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~ 82 (243)
..+.++++|+|||||||||||||+++|++..+||++|++++.++++||.++||++||+||||+|||+||++||++||+++
T Consensus 13 ~~~~~~~iP~HIA~ImDGNrRwAk~~g~~~~~Gh~~G~~~l~~i~~~c~~~gI~~vTvyafS~eN~~R~~~Ev~~l~~l~ 92 (249)
T 1f75_A 13 NNINAAQIPKHIAIIMDGNGRWAKQKKMPRIKGHYEGMQTVRKITRYASDLGVKYLTLYAFSTENWSRPKDEVNYLMKLP 92 (249)
T ss_dssp -CCCSTTSCSEEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEC------------CGGGTHH
T ss_pred CCCCCCCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 45785679988999642868999987997788999999999999999997698589987415423479889999999999
Q ss_pred HHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 86310000100002832631387445100002358999874202543115897248815789987787643676489687
Q gi|254780775|r 83 KSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCS 162 (243)
Q Consensus 83 ~~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~l~~~~~~~~~~~ 162 (243)
..++.+..+.+.+++++++++|+++.||+++++.+.++++.|+++++++||||++||||+||++|++++++++..+.+.+
T Consensus 93 ~~~~~~~~~~~~~~~i~i~~iG~~~~lp~~l~~~i~~~e~~T~~n~~~~lnia~~YgGr~EI~~A~~~~~~~~~~~~~~~ 172 (249)
T 1f75_A 93 GDFLNTFLPELIEKNVKVETIGFIDDLPDHTKKAVLEAKEKTKHNTGLTLVFALNYGGRKEIISAVQLIAERYKSGEISL 172 (249)
T ss_dssp HHHHHHHHHHHHHTTCEEEEESCGGGSCHHHHHHHHHHHHTTTTCCSCEEEEECSCCHHHHHHHHHHHHHHHHHTTSSCG
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99789889999970763012322344777888888999998346997079998445665899999999999875056650
Q ss_pred HHHHHHHHCCCCCCCCCCCCCEEEECCCCEECCCCCCCHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 78115531011336787765269945785213365640113553886368788889899999999986300505884
Q gi|254780775|r 163 HDVDSSLIAKYLDTSDVPDPDLIIRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFGGL 239 (243)
Q Consensus 163 ~~I~~~~i~~~L~~~~~p~pDLlIRTsGe~RLSnFllwq~~ysEl~F~~~lWPdf~~~dl~~~i~~y~~r~RrfG~~ 239 (243)
++|+++.|.++|++++.||||||||||||+|||||||||++||||||++++||||+..||.+||.+||+|+|||||+
T Consensus 173 ~~I~~~~i~~~L~~~~~pdpDLlIRTsGe~RLSnFLlwQ~~ytEl~F~~~~WPdf~~~dl~~ai~~y~~r~RrfG~~ 249 (249)
T 1f75_A 173 DEISETHFNEYLFTANMPDPELLIRTSGEERLSNFLIWQCSYSEFVFIDEFWPDFNEESLAQCISIYQNRHRRFGGL 249 (249)
T ss_dssp GGCSHHHHGGGSTTTTSCCCSEEEECTTCCBCCSCSTTTTTTCEEEECCSCGGGCCHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCHHHHHHCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 02279999985689998998878863886300221455231154786678887699999999999998666878899
No 4
>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A
Probab=100.00 E-value=0 Score=610.07 Aligned_cols=233 Identities=37% Similarity=0.680 Sum_probs=223.0
Q ss_pred CCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 89882699984885189997599877989999999999999999769868999720233653230124888898886310
Q gi|254780775|r 8 SSPPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLK 87 (243)
Q Consensus 8 ~~~P~HIaiImDGNrRwAk~~gl~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~ 87 (243)
.+.|+|||||||||||||+++|++..+||++|++++.+++.||.++||++|||||||+|||+||++||+.||+|+..++.
T Consensus 13 ~~~~~HiaiImDGNrRwAk~~g~~~~~Gh~~G~~~l~~i~~~c~~~gI~~lTvYafS~eN~kR~~~Ev~~L~~L~~~~l~ 92 (245)
T 2d2r_A 13 DSTLKHLAIIMDGNGRWAKLKNKARAYGHKKGVKTLKDITIWCANHKLECLTLYAFSTENWKRPKSEVDFLMKMLKKYLK 92 (245)
T ss_dssp -CCCCEEEEECCCHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTTCSEEEEECC----------CHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 89999899943586999988799778999999999999999999779988997740687768888999999999999876
Q ss_pred HCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 00010000283263138744510000235899987420254311589724881578998778764367648968778115
Q gi|254780775|r 88 KGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDS 167 (243)
Q Consensus 88 ~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~l~~~~~~~~~~~~~I~~ 167 (243)
...+.+.+++|+|+++||++.||.++++.+..+|+.|++|++++||||++||||+||++||+++++++..+...+ ++++
T Consensus 93 ~~~~~~~~~~iri~~iG~~~~lp~~l~~~i~~~e~~T~~n~~~~Lnia~~YgGr~EIv~Avk~i~~~~~~~~~~~-~~~~ 171 (245)
T 2d2r_A 93 DERSTYLDNNIRFRAIGDLEGFSKELRDTILQLENDTRHFKDFTQVLALNYGSKNELSRAFKSLLESPPSNISLL-ESLE 171 (245)
T ss_dssp HHHHHHHHTTCEEEEESCGGGSCHHHHHHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHSCCTTGGGC-SCCH
T ss_pred HHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCH-HHHH
T ss_conf 655442126749998636545773665544456764047754342245346878999999999997220124737-7665
Q ss_pred HHHCCCCCCCCCCCCCEEEECCCCEECCCCCCCHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 53101133678776526994578521336564011355388636878888989999999998630050588465
Q gi|254780775|r 168 SLIAKYLDTSDVPDPDLIIRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRDRRFGGLSK 241 (243)
Q Consensus 168 ~~i~~~L~~~~~p~pDLlIRTsGe~RLSnFllwq~~ysEl~F~~~lWPdf~~~dl~~~i~~y~~r~RrfG~~~~ 241 (243)
+.+.++|++++.||||||||||||+|||||||||++||||||++++||||+..||..||.+|++|+|||||++.
T Consensus 172 ~~~~~~l~~~~~pdpDLlIRTsGe~RLSnFLlwQ~aysEl~F~~~~WPdf~~~dl~~al~~y~~r~RrfGk~~~ 245 (245)
T 2d2r_A 172 NEISNRLDTRNLPEVDLLLRTGGEMRLSNFLLWQSSYAELFFTPILWPDFTPKDLENIISDFYKRVRKFGELKA 245 (245)
T ss_dssp HHHHTTSTTTTSCCCSEEEECSSCCCCTTSSTTTTTTCEEEECCSCGGGCCHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHCCCCCCCCCCEEEECCCCEECCCCHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 57776456689989887574599612345113211244589778888769999999999999862276899889
No 5
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*
Probab=100.00 E-value=0 Score=575.70 Aligned_cols=222 Identities=33% Similarity=0.551 Sum_probs=210.8
Q ss_pred CCCCEEEEECCCCHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 988269998488518999759987-7989999999999999999769868999720233653230124888898886310
Q gi|254780775|r 9 SPPDHIGIIMDGNGRWAAARGLPR-CAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLK 87 (243)
Q Consensus 9 ~~P~HIaiImDGNrRwAk~~gl~~-~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~ 87 (243)
++|+|||||||||||||+++|++. ..||++|++++.++++||.++||++|||||||+|||+||++||++||+++..++.
T Consensus 1 niP~HiaiImDGNrRwAk~~gl~~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvYafSteN~~R~~~Ev~~l~~l~~~~~~ 80 (227)
T 2vg0_A 1 DLPRHIAVLCDGNRRWARSAGYDDVSYGYRMGAAKIAEMLRWCHEAGIELATVYLLSTENLQRDPDELAALIEIITDVVE 80 (227)
T ss_dssp CCCSEEEEECCCHHHHHHHTTCSCTHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEETGGGGSCHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 99877899644868999977998545899999999999999999859988999986411114588999999999999888
Q ss_pred HCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHH---
Q ss_conf 00010000283263138744510000235899987420254311589724881578998778764367648968778---
Q gi|254780775|r 88 KGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHD--- 164 (243)
Q Consensus 88 ~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~l~~~~~~~~~~~~~--- 164 (243)
+.. ...+++++++|||++.+|+++++.+.++|+.|+++++++||||++||||+||++|+++++++...++...++
T Consensus 81 ~~~--~~~~~~~i~~iGd~~~lp~~~~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EIv~Avk~~~~~~~~~~~~~~~~~~ 158 (227)
T 2vg0_A 81 EIC--APANHWSVRTVGDLGLIGEEPARRLRGAVESTPEVASFHVNVAVGYGGRREIVDAVRALLSKELANGATAEELVD 158 (227)
T ss_dssp HHT--CTTTCCEEEEESCGGGSCHHHHHHHHHHHHTSCSSCSCEEEEEEEECHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHH--HHHCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCHHHHC
T ss_conf 877--642150368984066578689999999988640055651789862487799999999999999856887123211
Q ss_pred -HHHHHHCCCCCCCCCCCCCEEEECCCCEECCCCCCCHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf -11553101133678776526994578521336564011355388636878888989999999998630
Q gi|254780775|r 165 -VDSSLIAKYLDTSDVPDPDLIIRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLR 232 (243)
Q Consensus 165 -I~~~~i~~~L~~~~~p~pDLlIRTsGe~RLSnFllwq~~ysEl~F~~~lWPdf~~~dl~~~i~~y~~r 232 (243)
++++.|.++|++++.||||||||||||+|||||||||++||||||+|++||||+..||.+||.+||+|
T Consensus 159 ~~~~~~~~~~l~~~~~p~pDLlIRTsGe~RLSnFllwQ~aysElyF~~~~WPdf~~~dl~~ai~~y~~R 227 (227)
T 2vg0_A 159 AVTVEGISENLYTSGQPDPDLVIRTSGEQRLSGFLLWQSAYSEMWFTEAHWPAFRHVDFLRALRDYSAR 227 (227)
T ss_dssp HCCHHHHHHHSTTTTSCCCSEEEECTTCCCCTTTTTTTTTTCEEEECSSCGGGCCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 036999975435689989983220698601255453230252589788988659999999999998569
No 6
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=90.27 E-value=1 Score=24.32 Aligned_cols=66 Identities=15% Similarity=0.180 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE
Q ss_conf 7989999999999999999769868999720233653230124888898886310000100002832631
Q gi|254780775|r 33 CAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRV 102 (243)
Q Consensus 33 ~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~ 102 (243)
..+.....+.+.+.++.|..+|++++.+.+.... ...+ .+..++-+.+.+.+..+.+.++||++.+
T Consensus 76 ~~~~~~~~~~~~~~i~~a~~lG~~~i~~~~~~~~-~~~~---~~~~~~~~~~~l~~l~~~a~~~gv~l~i 141 (278)
T 1i60_A 76 EKGHNEIITEFKGMMETCKTLGVKYVVAVPLVTE-QKIV---KEEIKKSSVDVLTELSDIAEPYGVKIAL 141 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCEEEEECCBCS-SCCC---HHHHHHHHHHHHHHHHHHHGGGTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCC-CCCC---HHHHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 8999999999999999999839996045889887-7789---8999999999999999999861984489
No 7
>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A*
Probab=89.14 E-value=1.2 Score=23.84 Aligned_cols=117 Identities=12% Similarity=-0.002 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECCC--CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEC--CCC-CCCC
Q ss_conf 999999999999999976986899972023--36532301248888988863100001000028326313--874-4510
Q gi|254780775|r 36 HRKGIEVFNEIVAAAAEVGIKNLTIFAFSI--NNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVI--GNR-LSLD 110 (243)
Q Consensus 36 h~~G~~~l~~ii~~~~~~gI~~lTvyafS~--eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~i--Gd~-~~lp 110 (243)
-++..+.+.+.++.|..+|++++.+...+. ..+..+.. ...-++-+.+.+.+..+.+.++|+++.+= +.. ..+.
T Consensus 102 r~~~i~~l~~~ie~A~~lGa~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~A~~~Gv~l~iE~~~~~~~~~~ 180 (309)
T 2hk0_A 102 RAAGKAFFERTLSNVAKLDIHTIGGALHSYWPIDYSQPVD-KAGDYARGVEGINGIADFANDLGINLCIEVLNRFENHVL 180 (309)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEECTTSCSSCCTTSCCC-HHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCTTTCSSC
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCC
T ss_conf 9999999999999999829988984167886777888768-999999999999999999986176447884476455356
Q ss_pred CCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 0002358999874202543115897248815789987787643
Q gi|254780775|r 111 DDILCVLKEAEDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQ 153 (243)
Q Consensus 111 ~~i~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~l~~ 153 (243)
....+.+.-++.....+-++.+.++=.|-...++.++++.+..
T Consensus 181 ~t~~~~~~ll~~v~~~~vgl~~D~~h~~~~~~d~~~~i~~~~~ 223 (309)
T 2hk0_A 181 NTAAEGVAFVKDVGKNNVKVMLDTFHMNIEEDSFGDAIRTAGP 223 (309)
T ss_dssp CSHHHHHHHHHHHTCTTEEEEEEHHHHHHHCSCHHHHHHHHGG
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHC
T ss_conf 9999974210000367765544627888739999999986344
No 8
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif, structural genomics; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=80.41 E-value=3.3 Score=21.09 Aligned_cols=83 Identities=14% Similarity=0.271 Sum_probs=45.3
Q ss_pred EEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99848851899975998779899999999999999997698689997202336532301248888988863100001000
Q gi|254780775|r 15 GIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLK 94 (243)
Q Consensus 15 aiImDGNrRwAk~~gl~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~ 94 (243)
++..++++++. -+-+...--++..+.+.+.++.|..+|++.+++.....-.-.. ..+ ..+.+.+.+.+..+.+.
T Consensus 84 ~~~~~~~~~~~--l~s~d~~~r~~~~~~l~~~i~~a~~lG~~~i~~~~~~~~~~~~-~~~---~~~~~~~~l~~l~~~A~ 157 (295)
T 3cqj_A 84 SMCLSAHRRFP--LGSEDDAVRAQGLEIMRKAIQFAQDVGIRVIQLAGYDVYYQEA-NNE---TRRRFRDGLKESVEMAS 157 (295)
T ss_dssp EEEEGGGGTSC--TTCSSHHHHHHHHHHHHHHHHHHHHHTCCEEEECCCSCSSSCC-CHH---HHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC-HHH---HHHHHHHHHHHHHHHHH
T ss_conf 97525344799--9996999999999999999999997299889977888876778-499---99999999999999987
Q ss_pred CCCCEEEEC
Q ss_conf 028326313
Q gi|254780775|r 95 KNNIKVRVI 103 (243)
Q Consensus 95 ~~~iki~~i 103 (243)
+.||++.+=
T Consensus 158 ~~gi~lalE 166 (295)
T 3cqj_A 158 RAQVTLAME 166 (295)
T ss_dssp HHTCEEEEE
T ss_pred HHCCEEEEE
T ss_conf 537488886
No 9
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
Probab=77.17 E-value=4.1 Score=20.47 Aligned_cols=70 Identities=9% Similarity=0.041 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC--CCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE
Q ss_conf 7989999999999999999769868999720233653--230124888898886310000100002832631
Q gi|254780775|r 33 CAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWR--RPVSEISELVKLIKSFLKKGFYSLKKNNIKVRV 102 (243)
Q Consensus 33 ~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~--R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~ 102 (243)
..-.+++.+.+++.++.|..+|.+.+.+..++.-.-. .+..+....++-+.+.+.+..+.+.++||++.+
T Consensus 80 ~~~r~~~~~~~~~~i~~A~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~A~~~gi~l~i 151 (290)
T 2qul_A 80 KSVRDAGTEYVKRLLDDCHLLGAPVFAGLTFCAWPQSPPLDMKDKRPYVDRAIESVRRVIKVAEDYGIIYAL 151 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEEESSCCCCTTCCCCHHHHHHHHHHHHTTHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEE
T ss_conf 999999999999999999981998898215555677788874468999999999999999999851521465
No 10
>3kws_A Putative sugar isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=67.35 E-value=7 Score=19.02 Aligned_cols=70 Identities=16% Similarity=0.075 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE
Q ss_conf 77989999999999999999769868999720233653230124888898886310000100002832631
Q gi|254780775|r 32 RCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRV 102 (243)
Q Consensus 32 ~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~ 102 (243)
-.+-.+++.+.+++.++.|..+|.+.+.++....-.+..... ...-.+.+.+.+.+..+.+.++||++-+
T Consensus 95 d~~~R~~~ie~~k~~i~~a~~lGa~~v~~~~~~~~~~~~~~~-~~e~~~~~~~~l~~l~~~A~~~Gv~l~~ 164 (287)
T 3kws_A 95 DPAIRKECMDTMKEIIAAAGELGSTGVIIVPAFNGQVPALPH-TMETRDFLCEQFNEMGTFAAQHGTSVIF 164 (287)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCSEEEECSCCTTCCSBCCS-SHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHCCEEEE
T ss_conf 999999999999999999999599803424566777888888-8999999999999999999962987999
No 11
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structural genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=66.17 E-value=7.4 Score=18.88 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 99999999999999976986899972
Q gi|254780775|r 37 RKGIEVFNEIVAAAAEVGIKNLTIFA 62 (243)
Q Consensus 37 ~~G~~~l~~ii~~~~~~gI~~lTvya 62 (243)
.+-.+.+.+.++.+..+|++++.+++
T Consensus 80 ~~~~~~~~~~i~~A~~lG~~~v~v~~ 105 (286)
T 3dx5_A 80 EKTIEKCEQLAILANWFKTNKIRTFA 105 (286)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEECS
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf 99999999999999980989999867
No 12
>2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics, NPPSFA; 2.30A {Streptomyces coelicolor}
Probab=57.21 E-value=11 Score=17.87 Aligned_cols=67 Identities=13% Similarity=0.093 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC------CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE
Q ss_conf 999999999999999976986899972023365------3230124888898886310000100002832631
Q gi|254780775|r 36 HRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNW------RRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRV 102 (243)
Q Consensus 36 h~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~------~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~ 102 (243)
.++..+.++..++.|..+|++.++++.-+..-. .+.......-.+-+.+.+......+.+.|+++.+
T Consensus 106 ~~~~~~~~~~~i~~A~~lg~~~v~~~~~~~~~~~~~~~p~~~~~~~e~~~~~~~e~l~~l~~~a~~~gv~l~~ 178 (340)
T 2zds_A 106 RQRAAAEIKDTARAAARLGVDTVIGFTGSAIWHLVAMFPPAPESMIERGYQDFADRWNPILDVFDAEGVRFAH 178 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEECCCCSSGGGTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEE
T ss_conf 9999999999999998539987984355566776778886431014999999999999999999986986899
No 13
>2ksn_A Ubiquitin domain-containing protein 2; UBTD2, DC-UBP, signaling protein; NMR {Homo sapiens}
Probab=55.64 E-value=4.6 Score=20.15 Aligned_cols=27 Identities=30% Similarity=0.271 Sum_probs=21.3
Q ss_pred EECCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 724881578998778764367648968
Q gi|254780775|r 135 AFNYSSRDEISRAIKNIFQDIESGSVC 161 (243)
Q Consensus 135 a~~Yggr~EI~~A~k~l~~~~~~~~~~ 161 (243)
|-.||||.||-+|.+..++....+.+.
T Consensus 49 ap~~~Gr~EIW~ALraA~ea~~~~D~~ 75 (137)
T 2ksn_A 49 APAFEGRKEIWDALKAAAHAFESNDHE 75 (137)
T ss_dssp SSTTCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCHH
T ss_conf 863488799999999999987518999
No 14
>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3- epimerase, D-tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima}
Probab=52.69 E-value=13 Score=17.40 Aligned_cols=67 Identities=13% Similarity=0.081 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECC
Q ss_conf 98999999999999999976986899972023365323012488889888631000010000283263138
Q gi|254780775|r 34 AGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIG 104 (243)
Q Consensus 34 ~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iG 104 (243)
+-+++..+.+.+.++.|..+|++.+++..-.... .++.++. .+.+.+.+....+...+.++.+....
T Consensus 106 ~~r~~~i~~~~~~i~~a~~lG~~~i~~~~~~~~~-~~~~~~~---~~~~~~~l~~l~~~a~~~gv~le~~~ 172 (290)
T 2zvr_A 106 EIRKKAIERVVKHTEVAGMFGALVIIGLVRGRRE-GRSYEET---EELFIESMKRLLELTEHAKFVIEPLN 172 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCEEEESGGGCCCT-TSCHHHH---HHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC-CCCHHHH---HHHHHHHHHHHHHHHHHHHCEEEEEC
T ss_conf 9999999999999999997399379956898888-8999999---99999999999999775221485203
No 15
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, cytoplasm, schiff base, carbohydrate metabolism; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 1hl2_A 1fdy_A 1fdz_A 1nal_1
Probab=48.71 E-value=14 Score=17.01 Aligned_cols=105 Identities=12% Similarity=0.065 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHH
Q ss_conf 99999999999976986899972023365323012488889888631000010000283263138744510000235899
Q gi|254780775|r 40 IEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKE 119 (243)
Q Consensus 40 ~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~ 119 (243)
.+.+.+.+++|.+.||.-+.+.+.+.|.|.-+.+|...+.++..+.... ++.+ ++|--..-..+..+.+..
T Consensus 31 ~~~~~~~i~~~i~~Gv~gi~v~G~tGE~~~Ls~eEr~~li~~~~~~~~~--------~~~v-i~g~~~~~~~~ai~~a~~ 101 (303)
T 2wkj_A 31 KASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKG--------KIKL-IAHVGCVSTAESQQLAAS 101 (303)
T ss_dssp HHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT--------TSEE-EEECCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHHHHCCC--------CCCE-EEECCCCCHHHHHHHHHH
T ss_conf 9999999999998699989977675423348999999999999997179--------9878-997477889999999999
Q ss_pred HHHHHCCCCCCEEEEEE--CCCHHHHHHHHHHHHHHHHH
Q ss_conf 98742025431158972--48815789987787643676
Q gi|254780775|r 120 AEDQTRLNTGLNLFIAF--NYSSRDEISRAIKNIFQDIE 156 (243)
Q Consensus 120 ~e~~T~~n~~~~Lnia~--~Yggr~EI~~A~k~l~~~~~ 156 (243)
+++. +-+. .+.+.- ...+.+|+++-.+.++.++.
T Consensus 102 A~~~--Gad~-i~i~~p~~~~~~~~~i~~~~~~~~~~~~ 137 (303)
T 2wkj_A 102 AKRY--GFDA-VSAVTPFYYPFSFEEHCDHYRAIIDSAD 137 (303)
T ss_dssp HHHH--TCSE-EEEECCCSSCCCHHHHHHHHHHHHHHHT
T ss_pred HHHC--CCCE-EECCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 9983--9998-8625876568864899999998741577
No 16
>2j6v_A UV endonuclease, UVDE; plasmid, TIM barrel, DNA repair, DNA binding protein, lyase; HET: KCX ALY; 1.55A {Thermus thermophilus} PDB: 3bzg_A 3c0s_A* 3c0l_A 3c0q_A* 3bzj_A
Probab=45.11 E-value=16 Score=16.66 Aligned_cols=111 Identities=12% Similarity=0.035 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCH-HHHH-HHHHHHHHHHHHCCCCCCCCCCEEEECCC-C---CC-
Q ss_conf 9999999999999999769868999720233653230-1248-88898886310000100002832631387-4---45-
Q gi|254780775|r 36 HRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPV-SEIS-ELVKLIKSFLKKGFYSLKKNNIKVRVIGN-R---LS- 108 (243)
Q Consensus 36 h~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~-~Ev~-~L~~l~~~~l~~~~~~~~~~~iki~~iGd-~---~~- 108 (243)
...-+..+.++++||.+.||+ +|=+|++=|--.. .++. .....+...|.+--..++++++|+.+=.+ . ..
T Consensus 56 ~~~N~~~l~~il~~n~~~~I~---~~RisS~lfP~~s~~~~~~~~~~~~~~~l~~iG~~ak~~~iRLS~HP~qf~vL~S~ 132 (301)
T 2j6v_A 56 AAENLRDLERILRFNADHGFA---LFRIGQHLIPFASHPLFPYDWEGAYEEELARLGALARAFGQRLSMHPGQYVNPGSP 132 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHTCC---EEECCGGGSTTTTSTTCCSCHHHHHHHHHHHHHHHHHHTTCEEEECCCTTCCTTCS
T ss_pred HHHHHHHHHHHHHHHHHCCCC---EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCC
T ss_conf 999999999999999974981---89857231657678501254699999999999899998293499669855046899
Q ss_pred CCCCCHHHHHHHHHHHC-----CCCC--CEEEEEECCCHHHHHHHHHH
Q ss_conf 10000235899987420-----2543--11589724881578998778
Q gi|254780775|r 109 LDDDILCVLKEAEDQTR-----LNTG--LNLFIAFNYSSRDEISRAIK 149 (243)
Q Consensus 109 lp~~i~~~i~~~e~~T~-----~n~~--~~Lnia~~Yggr~EI~~A~k 149 (243)
=|+-+...+.+++.-.. +... +++.+-..||.+.+.++-..
T Consensus 133 ~~~vve~Si~~L~~ha~i~d~mG~~~~~i~iH~Gg~~gdk~~~~~rf~ 180 (301)
T 2j6v_A 133 DPEVVERSLAELRYSARLLSLLGAEDGVLVLHLGGAYGEKGKALRRFV 180 (301)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEECCCCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 779999999999999999987246677489975787896389999999
No 17
>1ja1_A NADPH-cytochrome P450 reductase; oxidoreductase; HET: FAD FMN NAP EPE; 1.80A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4 PDB: 1ja0_A* 1j9z_A* 3es9_A* 1amo_A* 3fjo_A* 1b1c_A*
Probab=43.43 E-value=17 Score=16.49 Aligned_cols=16 Identities=13% Similarity=0.316 Sum_probs=6.2
Q ss_pred EEEECCCCCCCCCHHH
Q ss_conf 9972023365323012
Q gi|254780775|r 59 TIFAFSINNWRRPVSE 74 (243)
Q Consensus 59 TvyafS~eN~~R~~~E 74 (243)
.++.-||-.-..++..
T Consensus 77 ~i~v~ST~G~G~~P~n 92 (622)
T 1ja1_A 77 VVFCMATYGEGDPTDN 92 (622)
T ss_dssp EEEEEEEETTTEECGG
T ss_pred EEEEECCCCCCCCCHH
T ss_conf 9999898899988640
No 18
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=41.01 E-value=14 Score=17.07 Aligned_cols=84 Identities=14% Similarity=0.216 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCC---------EEEECCCCEECCCCCC---CH---------
Q ss_conf 89987787643676489687781155310113367877652---------6994578521336564---01---------
Q gi|254780775|r 143 EISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVPDPD---------LIIRTGGEKRLSDFLL---WQ--------- 201 (243)
Q Consensus 143 EI~~A~k~l~~~~~~~~~~~~~I~~~~i~~~L~~~~~p~pD---------LlIRTsGe~RLSnFll---wq--------- 201 (243)
++...++++-++++.-.....++.++.....|..|++|+|| .+||+-|+.+--+|=+ |+
T Consensus 120 ~L~~~~k~lk~~i~~le~~~~~l~~~l~~~ll~iPNi~~~~VP~G~e~~n~vv~~~G~~~~f~f~pk~H~elge~l~liD 199 (501)
T 1wle_A 120 SLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPNQTHPDVPVGDESQARVLHVVGDKPAFSFQPRGHLEIAEKLDIIR 199 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTCCCSSGGGCEEEEEESCCCCCSSCCCCHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 99999999999999999999999999999997489988855798987768798403786478888521677766531201
Q ss_pred ------HCCCEEEECCCCCCCCCHHHHHHHHHHHHH
Q ss_conf ------135538863687888898999999999863
Q gi|254780775|r 202 ------VAYSEFVFIPEYWPDFSRELFFHALNQYNL 231 (243)
Q Consensus 202 ------~~ysEl~F~~~lWPdf~~~dl~~~i~~y~~ 231 (243)
++.+-+||..- ...-|.+||..|.-
T Consensus 200 fe~aakvsGsrfy~LkG-----~~A~LerALi~f~l 230 (501)
T 1wle_A 200 QKRLSHVSGHRSYYLRG-----AGALLQHGLVNFTL 230 (501)
T ss_dssp CTTCTTTTCTTCCEEET-----HHHHHHHHHHHHHH
T ss_pred HHHHHEECCCCEEEEEC-----CHHHHHHHHHHHHH
T ss_conf 33200354787189828-----29999999999999
No 19
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=40.77 E-value=19 Score=16.23 Aligned_cols=103 Identities=12% Similarity=0.063 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHH
Q ss_conf 99999999999976986899972023365323012488889888631000010000283263138744510000235899
Q gi|254780775|r 40 IEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKE 119 (243)
Q Consensus 40 ~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~ 119 (243)
.+.+.+.++++.+.|+.-+.+.+-+-|.+.=+.+|...+++...+..... +.+-+ |- ....+.+.++.
T Consensus 28 ~~~l~~~i~~l~~~Gv~gi~~~G~~GE~~~Ls~~Er~~~~~~~~~~~~~~--------~~vi~-gv---~~~s~~~~i~~ 95 (309)
T 3fkr_A 28 LASQKRAVDFMIDAGSDGLCILANFSEQFAITDDERDVLTRTILEHVAGR--------VPVIV-TT---SHYSTQVCAAR 95 (309)
T ss_dssp HHHHHHHHHHHHHTTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTS--------SCEEE-EC---CCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHHHHHCCC--------CEEEE-EC---CCCCHHHHHHH
T ss_conf 99999999999975999899783533346579999999999999871799--------60899-67---87868999999
Q ss_pred HHHHHCCCCCCEEEEEECC-----CHHHHHHHHHHHHHHH
Q ss_conf 9874202543115897248-----8157899877876436
Q gi|254780775|r 120 AEDQTRLNTGLNLFIAFNY-----SSRDEISRAIKNIFQD 154 (243)
Q Consensus 120 ~e~~T~~n~~~~Lnia~~Y-----ggr~EI~~A~k~l~~~ 154 (243)
++...+..-...+-+.--| -..+++.+-.+.+++.
T Consensus 96 a~~a~~~G~d~~lv~pP~y~~~~~~~~~~i~~~~~~ia~~ 135 (309)
T 3fkr_A 96 SLRAQQLGAAMVMAMPPYHGATFRVPEAQIFEFYARVSDA 135 (309)
T ss_dssp HHHHHHTTCSEEEECCSCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 9997434998788548744567788999999999999722
No 20
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=37.65 E-value=21 Score=15.93 Aligned_cols=104 Identities=16% Similarity=0.149 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHH
Q ss_conf 99999999999976986899972023365323012488889888631000010000283263138744510000235899
Q gi|254780775|r 40 IEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKE 119 (243)
Q Consensus 40 ~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~ 119 (243)
.+.+.+.++|+.+.|+.-+.+...+.|.+.=+.+|...+.+...+.... ++.+- .|--..-..+..+.+..
T Consensus 36 ~~~~~~~i~~li~~Gv~Gi~v~G~tGE~~~Ls~~Er~~l~~~~~~~~~~--------~~~vi-~g~~~~s~~~~i~~a~~ 106 (304)
T 3cpr_A 36 IAAGREVAAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVGD--------RAKLI-AGVGTNNTRTSVELAEA 106 (304)
T ss_dssp HHHHHHHHHHHHHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTT--------TSEEE-EECCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEECEEHHHHHHCCHHHHHHHHHHHHHHHCC--------CCCEE-EECCCCHHHHHHHHHHH
T ss_conf 9999999999997699989978551415558999999999999998368--------87678-62574129999999999
Q ss_pred HHHHHCCCCCCEEEEEECC--CHHHHHHHHHHHHHHHH
Q ss_conf 9874202543115897248--81578998778764367
Q gi|254780775|r 120 AEDQTRLNTGLNLFIAFNY--SSRDEISRAIKNIFQDI 155 (243)
Q Consensus 120 ~e~~T~~n~~~~Lnia~~Y--ggr~EI~~A~k~l~~~~ 155 (243)
+++. +-+. .+-+.-.| -+.++|++-.+++++..
T Consensus 107 a~~~--Gad~-i~v~pP~~~~~~~~~i~~~~~~v~~a~ 141 (304)
T 3cpr_A 107 AASA--GADG-LLVVTPYYSKPSQEGLLAHFGAIAAAT 141 (304)
T ss_dssp HHHT--TCSE-EEEECCCSSCCCHHHHHHHHHHHHHHC
T ss_pred HHHC--CCCE-EEECCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 9973--9999-998898778989999999999999735
No 21
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=37.04 E-value=19 Score=16.27 Aligned_cols=54 Identities=17% Similarity=0.204 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCC----------EEEECCCCEECC
Q ss_conf 789987787643676489687781155310113367877652----------699457852133
Q gi|254780775|r 142 DEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVPDPD----------LIIRTGGEKRLS 195 (243)
Q Consensus 142 ~EI~~A~k~l~~~~~~~~~~~~~I~~~~i~~~L~~~~~p~pD----------LlIRTsGe~RLS 195 (243)
+++..-++.+.++++.-.....++.++...-.+..|++|++| .+||+-|+.+--
T Consensus 72 ~~l~~~~~~lk~~ik~le~~l~~l~~~l~~lll~iPNl~~~~VP~G~de~dN~~ir~~G~~~~f 135 (455)
T 2dq0_A 72 DELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNITHPSVPVGKDENDNVPIRFWGKARVW 135 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTSCCCSSGGGCEEEEEESCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCC
T ss_conf 9999999999999999999999999999999972767778666878886666467850575565
No 22
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase, lysine biosynthesis; 1.50A {Hahella chejuensis}
Probab=35.19 E-value=23 Score=15.68 Aligned_cols=103 Identities=14% Similarity=0.121 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHH
Q ss_conf 99999999999976986899972023365323012488889888631000010000283263138744510000235899
Q gi|254780775|r 40 IEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKE 119 (243)
Q Consensus 40 ~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~ 119 (243)
.+.+.+.++|+.+.|+.-+.+-..+.|.+.=+.+|...+++...+.... ++.+- .|--..-..+..+.+..
T Consensus 20 ~~~~~~~i~~l~~~Gv~gi~v~G~tGE~~~Ls~~Er~~l~~~~~~~~~~--------~~~vi-~gv~~~~~~~ai~~a~~ 90 (297)
T 2rfg_A 20 EKALAGLVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQAQG--------RVPVI-AGAGSNNPVEAVRYAQH 90 (297)
T ss_dssp HHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTT--------SSCBE-EECCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHHHHCCC--------CCEEE-EECCCHHHHHHHHHHHH
T ss_conf 9999999999997799999979233145348999999999998997189--------97099-96886019999999999
Q ss_pred HHHHHCCCCCCEEEEEECC---CHHHHHHHHHHHHHHHH
Q ss_conf 9874202543115897248---81578998778764367
Q gi|254780775|r 120 AEDQTRLNTGLNLFIAFNY---SSRDEISRAIKNIFQDI 155 (243)
Q Consensus 120 ~e~~T~~n~~~~Lnia~~Y---ggr~EI~~A~k~l~~~~ 155 (243)
+++. .-...+ +..+| .+.+++++-.+.+++.+
T Consensus 91 a~~~---G~d~i~-~~~P~~~~~~~~~~~~~f~~i~~a~ 125 (297)
T 2rfg_A 91 AQQA---GADAVL-CVAGYYNRPSQEGLYQHFKMVHDAI 125 (297)
T ss_dssp HHHH---TCSEEE-ECCCTTTCCCHHHHHHHHHHHHHHC
T ss_pred HHHH---CCCEEE-CCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 9980---999897-0688788989999999999999867
No 23
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=32.67 E-value=26 Score=15.42 Aligned_cols=102 Identities=10% Similarity=0.120 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE-CCCCCCCCCCCHHHHH
Q ss_conf 999999999999769868999720233653230124888898886310000100002832631-3874451000023589
Q gi|254780775|r 40 IEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRV-IGNRLSLDDDILCVLK 118 (243)
Q Consensus 40 ~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~-iGd~~~lp~~i~~~i~ 118 (243)
.+.+.+.++|+.+.||.-+.+-+-+-|-+.=+.+|...+++...+.... ++.+-. +| . .+.+.+.
T Consensus 32 ~~~~~~~i~~l~~~Gv~gl~i~GstGE~~~Ls~eEr~~l~~~~~~~~~~--------~~~vi~g~~--~----st~~~i~ 97 (314)
T 3d0c_A 32 WKGLDDNVEFLLQNGIEVIVPNGNTGEFYALTIEEAKQVATRVTELVNG--------RATVVAGIG--Y----SVDTAIE 97 (314)
T ss_dssp HHHHHHHHHHHHHTTCSEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTT--------SSEEEEEEC--S----SHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHHHHCCC--------CEEEEEECC--C----CHHHHHH
T ss_conf 9999999999997699989968500005348999999999988887099--------514997468--8----8899999
Q ss_pred HHHHHHCCCCCCEEEEEE--CCCHHHHHHHHHHHHHHHH
Q ss_conf 998742025431158972--4881578998778764367
Q gi|254780775|r 119 EAEDQTRLNTGLNLFIAF--NYSSRDEISRAIKNIFQDI 155 (243)
Q Consensus 119 ~~e~~T~~n~~~~Lnia~--~Yggr~EI~~A~k~l~~~~ 155 (243)
.++...+..-...+-++- ..-+.++|.+-.+.+++.+
T Consensus 98 ~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~f~~ia~~~ 136 (314)
T 3d0c_A 98 LGKSAIDSGADCVMIHQPVHPYITDAGAVEYYRNIIEAL 136 (314)
T ss_dssp HHHHHHHTTCSEEEECCCCCSCCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 999999729884420588556776799999999997504
No 24
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=30.68 E-value=28 Score=15.21 Aligned_cols=16 Identities=25% Similarity=0.461 Sum_probs=7.7
Q ss_pred CCCCCHHHHHHHHHHH
Q ss_conf 8888989999999998
Q gi|254780775|r 214 WPDFSRELFFHALNQY 229 (243)
Q Consensus 214 WPdf~~~dl~~~i~~y 229 (243)
||.=...+..+++..+
T Consensus 301 ~P~N~~~~V~~~l~~l 316 (682)
T 2bpo_A 301 WPSNPLEKVEQFLSIF 316 (682)
T ss_dssp CCCCCHHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHH
T ss_conf 8069999999999983
No 25
>3ktc_A Xylose isomerase; putative sugar isomerase, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.54A {Pectobacterium atrosepticum SCRI1043}
Probab=29.31 E-value=29 Score=15.06 Aligned_cols=30 Identities=17% Similarity=0.308 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 989999999999999999769868999720
Q gi|254780775|r 34 AGHRKGIEVFNEIVAAAAEVGIKNLTIFAF 63 (243)
Q Consensus 34 ~Gh~~G~~~l~~ii~~~~~~gI~~lTvyaf 63 (243)
.--++..+-+++.++.|.++|.+.++++.-
T Consensus 100 ~~R~~ai~~~k~~id~A~~lGa~~v~v~~g 129 (333)
T 3ktc_A 100 AARAAAFELMHESAGIVRELGANYVKVWPG 129 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSEEEECCT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 999999999999999999849972686235
No 26
>1xxx_A DHDPS, dihydrodipicolinate synthase; DAPA, RV2753C, lysine biosynthesis, structural genomics, PSI protein structure initiative; 2.28A {Mycobacterium tuberculosis} SCOP: c.1.10.1
Probab=29.26 E-value=29 Score=15.06 Aligned_cols=104 Identities=11% Similarity=0.083 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHH
Q ss_conf 99999999999976986899972023365323012488889888631000010000283263138744510000235899
Q gi|254780775|r 40 IEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKE 119 (243)
Q Consensus 40 ~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~ 119 (243)
.+.+.+.++++.+.|+.-+.+...+.|-+.=+.+|...+++...+.... ++.+ +.|- ....+.+.+..
T Consensus 34 ~~~l~~~i~~l~~~Gv~Gi~v~G~tGE~~~Ls~~Er~~l~~~~~~~~~~--------~~~v-i~gv---~~~s~~~~i~~ 101 (303)
T 1xxx_A 34 TATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGD--------RARV-IAGA---GTYDTAHSIRL 101 (303)
T ss_dssp HHHHHHHHHHHHHTTCSEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTT--------TSEE-EEEC---CCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCHHHHHHHHHHHHHHHCC--------CCCE-EEEC---CCCCHHHHHHH
T ss_conf 9999999999997799989978134657768799999999999999289--------8748-9845---76668999999
Q ss_pred HHHHHCCCCCCEEEEEECC--CHHHHHHHHHHHHHHHH
Q ss_conf 9874202543115897248--81578998778764367
Q gi|254780775|r 120 AEDQTRLNTGLNLFIAFNY--SSRDEISRAIKNIFQDI 155 (243)
Q Consensus 120 ~e~~T~~n~~~~Lnia~~Y--ggr~EI~~A~k~l~~~~ 155 (243)
++..-...-...+-+.-.| -+.++|.+-.+.+++..
T Consensus 102 a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~ia~~~ 139 (303)
T 1xxx_A 102 AKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADAT 139 (303)
T ss_dssp HHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 99999716986999457578989999999999999716
No 27
>2v1l_A Hypothetical protein; pathogenicity island, unknown function; 2.13A {Vibrio cholerae}
Probab=28.28 E-value=30 Score=14.95 Aligned_cols=35 Identities=11% Similarity=0.580 Sum_probs=25.4
Q ss_pred CCCCCCCCEEE-ECCCCEECCCCCCCHHCC-CEEEECCCCCCCC
Q ss_conf 67877652699-457852133656401135-5388636878888
Q gi|254780775|r 176 TSDVPDPDLII-RTGGEKRLSDFLLWQVAY-SEFVFIPEYWPDF 217 (243)
Q Consensus 176 ~~~~p~pDLlI-RTsGe~RLSnFllwq~~y-sEl~F~~~lWPdf 217 (243)
.++..|+.+=+ |++.. .||++| |.+-+..-.||++
T Consensus 54 ~GGfHPVEIrl~r~~d~-------~W~i~yITdFsY~G~~~pEL 90 (148)
T 2v1l_A 54 DGGFHPVEIALSQSSDG-------QWCIEYITDFAYVGNHFPEL 90 (148)
T ss_dssp TBCCCCEEEEEEECSSS-------CEEEEEEEEEEEC---CCCE
T ss_pred CCCCCCEEEEEEECCCC-------CEEEEEEEEEECCCCCCCCE
T ss_conf 79917789999985899-------79999998540049998735
No 28
>2w56_A VC0508; unknown function; 1.90A {Vibrio cholerae} PDB: 2w56_B
Probab=28.05 E-value=31 Score=14.93 Aligned_cols=36 Identities=19% Similarity=0.678 Sum_probs=28.1
Q ss_pred CCCCCCCCEEE-ECCCCEECCCCCCCHHCC-CEEEECCCCCCCCC
Q ss_conf 67877652699-457852133656401135-53886368788889
Q gi|254780775|r 176 TSDVPDPDLII-RTGGEKRLSDFLLWQVAY-SEFVFIPEYWPDFS 218 (243)
Q Consensus 176 ~~~~p~pDLlI-RTsGe~RLSnFllwq~~y-sEl~F~~~lWPdf~ 218 (243)
.++..|+.+=+ |+++. .||+.| |.+-++.-.+|++.
T Consensus 54 ~GGfHPVEIrl~r~~~~-------~W~i~YITDFsY~G~~~pEL~ 91 (147)
T 2w56_A 54 EGGFHPVEMAICQTSTG-------EWSIEYITDFAYMGNYYPELE 91 (147)
T ss_dssp TBCSCCEEEEEEECTTS-------CEEEEEEEEEEEC--CCCCEE
T ss_pred CCCCCCEEEEEEECCCC-------CEEEEEEEEECCCCCCCCCEE
T ss_conf 79927789999984799-------699999984422699976042
No 29
>1vk1_A Conserved hypothetical protein; reductive methylation, dimethyl lysine, structural genomics, PSI, protein structure initiative; HET: MLY; 1.20A {Pyrococcus furiosus} SCOP: d.268.1.2
Probab=27.55 E-value=14 Score=17.18 Aligned_cols=26 Identities=31% Similarity=0.655 Sum_probs=18.2
Q ss_pred EECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 9848851899975998779899999999999999997698689997202
Q gi|254780775|r 16 IIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFS 64 (243)
Q Consensus 16 iImDGNrRwAk~~gl~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS 64 (243)
+|.||+|||.- |..+|.+.+-+....
T Consensus 66 ~ii~G~~R~~A-----------------------~~~lg~~~ip~~~~d 91 (242)
T 1vk1_A 66 LIVDGHHRWAG-----------------------LQKLGAKRAPSVILD 91 (242)
T ss_dssp EEEECHHHHHH-----------------------HHHHTCCEEEEEEEC
T ss_pred EEECCHHHHHH-----------------------HHHCCCCEEEEEEEE
T ss_conf 99655899999-----------------------998799755489985
No 30
>2h7b_A Core-binding factor, ML1-ETO; helix bundle, transcription; NMR {Homo sapiens} SCOP: a.277.1.1 PDB: 2pp4_A 2knh_A
Probab=26.07 E-value=33 Score=14.70 Aligned_cols=40 Identities=13% Similarity=0.179 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCE
Q ss_conf 7899877876436764896877811553101133678776526
Q gi|254780775|r 142 DEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVPDPDL 184 (243)
Q Consensus 142 ~EI~~A~k~l~~~~~~~~~~~~~I~~~~i~~~L~~~~~p~pDL 184 (243)
.|+.+-|+.+++...++++++++-...+... + ...|.|.|
T Consensus 25 pe~~~~Vr~LV~~L~~~~i~~EEF~~~Lq~~-l--ns~pqP~l 64 (105)
T 2h7b_A 25 PEIGERVRTLVLGLVNSTLTIEEFHSKLQEA-T--NFPLRPFV 64 (105)
T ss_dssp HHHHHHHHHHHHHHHTSSCCHHHHHHHHHHH-S--SSSCCSSS
T ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-H--CCCCCCHH
T ss_conf 2588999999999980887899999999999-7--59996223
No 31
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=25.82 E-value=34 Score=14.67 Aligned_cols=103 Identities=14% Similarity=0.148 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHH
Q ss_conf 99999999999976986899972023365323012488889888631000010000283263138744510000235899
Q gi|254780775|r 40 IEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKE 119 (243)
Q Consensus 40 ~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~ 119 (243)
.+.+.+.++|+.+.|+.-+.+.+-+.|.+.=+.+|...+++...+.... ++.+- .|--..-..+..+.+..
T Consensus 32 ~~~~~~~i~~l~~~Gv~Gl~~~G~tGE~~~Ls~eEr~~l~~~~~~~~~~--------~~~vi-~gv~~~s~~~~i~~a~~ 102 (301)
T 1xky_A 32 FAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDK--------RVPVI-AGTGSNNTHASIDLTKK 102 (301)
T ss_dssp HHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT--------SSCEE-EECCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEECEECCHHHHCCHHHHHHHHHHHHHHCCC--------CCCEE-EEECCHHHHHHHHHHHH
T ss_conf 9999999999997699989978652206558999999999999986046--------78768-87273669999999999
Q ss_pred HHHHHCCCCCCEEEEEECC---CHHHHHHHHHHHHHHHH
Q ss_conf 9874202543115897248---81578998778764367
Q gi|254780775|r 120 AEDQTRLNTGLNLFIAFNY---SSRDEISRAIKNIFQDI 155 (243)
Q Consensus 120 ~e~~T~~n~~~~Lnia~~Y---ggr~EI~~A~k~l~~~~ 155 (243)
+++. .-...+-+ .+| .+.++|.+-.+.+++..
T Consensus 103 a~~~---Gad~i~v~-pP~~~~~~~~~i~~~~~~i~~~~ 137 (301)
T 1xky_A 103 ATEV---GVDAVMLV-APYYNKPSQEGMYQHFKAIAEST 137 (301)
T ss_dssp HHHT---TCSEEEEE-CCCSSCCCHHHHHHHHHHHHHTC
T ss_pred HHHC---CCCEEEEC-CCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 9975---99999978-99789989999999999998518
No 32
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris}
Probab=25.73 E-value=34 Score=14.66 Aligned_cols=104 Identities=13% Similarity=0.106 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHH
Q ss_conf 99999999999976986899972023365323012488889888631000010000283263138744510000235899
Q gi|254780775|r 40 IEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKE 119 (243)
Q Consensus 40 ~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~ 119 (243)
.+.+.+.++|+.+.|+.-+.+...+-|.+.=+.+|...+++...+......+- +--+| ...+.+.+..
T Consensus 24 ~~~~~~~i~~l~~~Gv~gi~~~GttGE~~~Ls~~Er~~~~~~~~~~~~~~~~v-------i~gv~-----~~s~~~~i~~ 91 (300)
T 3eb2_A 24 ADVMGRLCDDLIQAGVHGLTPLGSTGEFAYLGTAQREAVVRATIEAAQRRVPV-------VAGVA-----STSVADAVAQ 91 (300)
T ss_dssp HHHHHHHHHHHHHTTCSCBBTTSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCB-------EEEEE-----ESSHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCCHHHCCHHHHHHHHHHHHHHHCCCCCE-------EEECC-----CCCHHHHHHH
T ss_conf 99999999999975999899755324365599999999999999861468858-------99457-----6648899999
Q ss_pred HHHHHCCCCCCEEEEEECC--CHHHHHHHHHHHHHHHH
Q ss_conf 9874202543115897248--81578998778764367
Q gi|254780775|r 120 AEDQTRLNTGLNLFIAFNY--SSRDEISRAIKNIFQDI 155 (243)
Q Consensus 120 ~e~~T~~n~~~~Lnia~~Y--ggr~EI~~A~k~l~~~~ 155 (243)
++..-+..-...+.+.-.| .+.+++.+-.+.+++..
T Consensus 92 a~~a~~~Gad~i~v~pP~~~~~~~~~~~~~~~~va~~~ 129 (300)
T 3eb2_A 92 AKLYEKLGADGILAILEAYFPLKDAQIESYFRAIADAV 129 (300)
T ss_dssp HHHHHHHTCSEEEEEECCSSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 97776449817985265335777799999999887558
No 33
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, cytoplasm; 2.00A {Neisseria meningitidis serogroup B}
Probab=24.70 E-value=35 Score=14.54 Aligned_cols=103 Identities=16% Similarity=0.244 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHH
Q ss_conf 99999999999976986899972023365323012488889888631000010000283263138744510000235899
Q gi|254780775|r 40 IEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKE 119 (243)
Q Consensus 40 ~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~ 119 (243)
.+.+.+.++++.+.|+.-+.+..-+-|.+.=+.+|-..+++...+..... +.+ +.|--..-..+..+.++.
T Consensus 27 ~~~~~~~i~~l~~~Gv~gl~~~G~tGE~~~Ls~~Er~~l~~~~~~~~~~~--------~~v-i~gv~~~s~~~~i~~a~~ 97 (297)
T 3flu_A 27 YEQLRDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAKR--------VPV-IAGTGANNTVEAIALSQA 97 (297)
T ss_dssp HHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTS--------SCE-EEECCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEECCHHHHHHHCHHHHHHHHHHHHHHHCCCC--------CCC-CCCCCCCCHHHHHHHHHH
T ss_conf 99999999999976999899684156377691999999999999870365--------554-567675639999999999
Q ss_pred HHHHHCCCCCCEEEEEECC---CHHHHHHHHHHHHHHHH
Q ss_conf 9874202543115897248---81578998778764367
Q gi|254780775|r 120 AEDQTRLNTGLNLFIAFNY---SSRDEISRAIKNIFQDI 155 (243)
Q Consensus 120 ~e~~T~~n~~~~Lnia~~Y---ggr~EI~~A~k~l~~~~ 155 (243)
+++. .-...+-+ .+| -+.+|+++-.+.+++..
T Consensus 98 a~~~---Gad~v~v~-pP~~~~~s~~~i~~~~~~i~~a~ 132 (297)
T 3flu_A 98 AEKA---GADYTLSV-VPYYNKPSQEGIYQHFKTIAEAT 132 (297)
T ss_dssp HHHT---TCSEEEEE-CCCSSCCCHHHHHHHHHHHHHHC
T ss_pred HHHC---CCCCCEEC-CCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 9982---99875625-88788989999999999998547
No 34
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=24.66 E-value=35 Score=14.54 Aligned_cols=104 Identities=13% Similarity=0.176 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHH
Q ss_conf 99999999999976986899972023365323012488889888631000010000283263138744510000235899
Q gi|254780775|r 40 IEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKE 119 (243)
Q Consensus 40 ~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~ 119 (243)
.+.+.+.++++.+.|+.-+.+.+-+.|.+.=+.+|...+++...+.... ++.+- .|--..-..+..+.+..
T Consensus 20 ~~~~~~~i~~~~~~Gv~gi~~~G~tgE~~~Ls~~Er~~l~~~~~~~~~~--------r~~vi-~g~~~~s~~~ai~~a~~ 90 (289)
T 2yxg_A 20 FDGLEENINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVVNG--------RVQVI-AGAGSNCTEEAIELSVF 90 (289)
T ss_dssp HHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT--------SSEEE-EECCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHHHHHCC--------CCCEE-EECCCCCHHHHHHHHHH
T ss_conf 9999999999997699989978443035448999999999999998289--------96089-73687459999999999
Q ss_pred HHHHHCCCCCCEEEEEECCC--HHHHHHHHHHHHHHHH
Q ss_conf 98742025431158972488--1578998778764367
Q gi|254780775|r 120 AEDQTRLNTGLNLFIAFNYS--SRDEISRAIKNIFQDI 155 (243)
Q Consensus 120 ~e~~T~~n~~~~Lnia~~Yg--gr~EI~~A~k~l~~~~ 155 (243)
+++. .-...+-..-.|. +.++|.+-.+.+++..
T Consensus 91 a~~~---Gad~v~v~~P~~~~~~~~~i~~~~~~ia~~~ 125 (289)
T 2yxg_A 91 AEDV---GADAVLSITPYYNKPTQEGLRKHFGKVAESI 125 (289)
T ss_dssp HHHH---TCSEEEEECCCSSCCCHHHHHHHHHHHHHHC
T ss_pred HHHC---CCCEEEECCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 9977---9999998898788999999999999999647
No 35
>1acf_A Profilin I; protein binding, actin-binding protein, contractIle protein; 2.00A {Acanthamoeba castellanii} SCOP: d.110.1.1 PDB: 1prq_A 2prf_A 1f2k_A 2acg_A
Probab=24.36 E-value=36 Score=14.50 Aligned_cols=26 Identities=8% Similarity=0.091 Sum_probs=20.8
Q ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 997202336532301248888988863
Q gi|254780775|r 59 TIFAFSINNWRRPVSEISELVKLIKSF 85 (243)
Q Consensus 59 TvyafS~eN~~R~~~Ev~~L~~l~~~~ 85 (243)
++|| ++++|.-+++|+..+.+.+.+.
T Consensus 27 ~vwA-~s~gf~~~~~E~~~i~~~f~d~ 52 (125)
T 1acf_A 27 NTWA-TSAGFAVTPAQGTTLAGAFNNA 52 (125)
T ss_dssp CEEE-ECTTCCCCHHHHHHHHHHHHCC
T ss_pred CEEE-CCCCCCCCHHHHHHHHHHCCCC
T ss_conf 8576-0899984999999999861682
No 36
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=24.26 E-value=36 Score=14.49 Aligned_cols=104 Identities=12% Similarity=0.174 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHH
Q ss_conf 99999999999976986899972023365323012488889888631000010000283263138744510000235899
Q gi|254780775|r 40 IEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKE 119 (243)
Q Consensus 40 ~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~ 119 (243)
.+.+.+.++++.+.||.-+.+.+-+-|-+.=+.+|...+++...+.... ++.+-+ |--..-..+..+.++.
T Consensus 20 ~~~l~~~i~~li~~Gv~Gi~~~G~tGE~~~Ls~~Er~~l~~~~~~~~~~--------~~~vi~-gv~~~s~~~~i~~a~~ 90 (294)
T 2ehh_A 20 YEALGNLIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAAG--------RIKVIA-GTGGNATHEAVHLTAH 90 (294)
T ss_dssp HHHHHHHHHHHHTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT--------SSEEEE-ECCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHHHHCCC--------CCCEEE-EECCCCHHHHHHHHHH
T ss_conf 9999999999997599989978554334348999999999999997389--------987899-8178459999999999
Q ss_pred HHHHHCCCCCCEEEEEECC--CHHHHHHHHHHHHHHHH
Q ss_conf 9874202543115897248--81578998778764367
Q gi|254780775|r 120 AEDQTRLNTGLNLFIAFNY--SSRDEISRAIKNIFQDI 155 (243)
Q Consensus 120 ~e~~T~~n~~~~Lnia~~Y--ggr~EI~~A~k~l~~~~ 155 (243)
+++. .-...+-+.-.| .+.+++.+-.+.+++.+
T Consensus 91 a~~~---Gad~i~v~pP~~~~~~~~~~~~~~~~i~~~~ 125 (294)
T 2ehh_A 91 AKEV---GADGALVVVPYYNKPTQRGLYEHFKTVAQEV 125 (294)
T ss_dssp HHHT---TCSEEEEECCCSSCCCHHHHHHHHHHHHHHC
T ss_pred HHHC---CCCEEEECCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 9976---9999998899999989999999999999713
No 37
>3noe_A DAP-A, dihydrodipicolinate synthase; Lys biosynthesis pathway, lyase; 2.95A {Pseudomonas aeruginosa}
Probab=24.05 E-value=36 Score=14.46 Aligned_cols=104 Identities=13% Similarity=0.226 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHH
Q ss_conf 99999999999976986899972023365323012488889888631000010000283263138744510000235899
Q gi|254780775|r 40 IEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKE 119 (243)
Q Consensus 40 ~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~ 119 (243)
.+.+.+.++++.+.||.-+.+...+.|.+.-+.+|...+.+...+.... ++.+ +.|--..-..+..+.+..
T Consensus 21 ~~~~~~~i~~li~~Gv~gi~i~G~tGE~~~Ls~~Er~~l~~~~~~~~~g--------~~~v-i~gv~~~s~~~~i~~a~~ 91 (292)
T 3noe_A 21 WDSLAKLVDFHLQDGTNAIVAVGTTGESATLDVEEHIQVVRRVVDQVKG--------RIPV-IAGTGANSTREAVALTEA 91 (292)
T ss_dssp HHHHHHHHHHHHHHTCSEEEESSTTTTGGGCCHHHHHHHHHHHHHHHTT--------SSCE-EEECCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEECEECCHHHHCCHHHHHHHHHHHHHHHCC--------CCCE-EEECCCCCHHHHHHHHHH
T ss_conf 9999999999998599989988575226669999999999999997258--------8868-985587559999999999
Q ss_pred HHHHHCCCCCCEEEEE--ECCCHHHHHHHHHHHHHHHH
Q ss_conf 9874202543115897--24881578998778764367
Q gi|254780775|r 120 AEDQTRLNTGLNLFIA--FNYSSRDEISRAIKNIFQDI 155 (243)
Q Consensus 120 ~e~~T~~n~~~~Lnia--~~Yggr~EI~~A~k~l~~~~ 155 (243)
+++. .-...+.+. +.-.++++|.+-.+.+++..
T Consensus 92 a~~~---Gad~v~v~~P~~~~~~~~~i~~~~~~ia~~~ 126 (292)
T 3noe_A 92 AKSG---GADACLLVTPYYNKPTQEGMYQHFRHIAEAV 126 (292)
T ss_dssp HHTT---TCSEEEEECCCSSCCCHHHHHHHHHHHHHHS
T ss_pred HHHC---CCCEEEECCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 9984---9999998899889989999999999999747
No 38
>1yr1_A Divib, FTSQ, cell-division initiation protein; divisome, cell cycle; NMR {Geobacillus stearothermophilus} PDB: 2alj_A
Probab=23.22 E-value=30 Score=15.00 Aligned_cols=17 Identities=12% Similarity=0.075 Sum_probs=8.2
Q ss_pred HCCCCCCCCCCCCCEEE
Q ss_conf 10113367877652699
Q gi|254780775|r 170 IAKYLDTSDVPDPDLII 186 (243)
Q Consensus 170 i~~~L~~~~~p~pDLlI 186 (243)
|++=.+++.-.+||.+.
T Consensus 68 ISEI~~~p~k~~~~~i~ 84 (119)
T 1yr1_A 68 MSEIHYKPTREYEDRVI 84 (119)
T ss_dssp CSEEEECCCSSCTTEEE
T ss_pred CCEEEECCCCCCCCEEE
T ss_conf 66998278888876499
No 39
>1ddz_A Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A {Porphyridium purpureum} SCOP: c.53.2.1 c.53.2.1
Probab=22.04 E-value=9.4 Score=18.19 Aligned_cols=34 Identities=9% Similarity=0.167 Sum_probs=21.6
Q ss_pred CCCCCCEEEECCCCEECCCCCCCHHCCCEEEECC
Q ss_conf 8776526994578521336564011355388636
Q gi|254780775|r 178 DVPDPDLIIRTGGEKRLSDFLLWQVAYSEFVFIP 211 (243)
Q Consensus 178 ~~p~pDLlIRTsGe~RLSnFllwq~~ysEl~F~~ 211 (243)
....|..++=|--..|++-=+++.+.--|+|-+-
T Consensus 317 ~gQ~P~~lvi~CsDSRv~pe~ifg~~pGdlFVvR 350 (496)
T 1ddz_A 317 HTQTPEILWIGCADSRVPANQIINLPAGEVFVHR 350 (496)
T ss_dssp TCCCCSEEEEEETTCSSCHHHHTTCCTTSEEEEE
T ss_pred CCCCCCEEEEEECCCCCCHHHHCCCCCCCEEEEE
T ss_conf 8999967999754879898997199997679987
No 40
>2w3q_A Carbonic anhydrase 2; lyase, inhibition, sulfonamide; 1.34A {Cryptococcus neoformans} PDB: 2w3n_A
Probab=21.98 E-value=9.5 Score=18.18 Aligned_cols=16 Identities=31% Similarity=0.605 Sum_probs=11.3
Q ss_pred EEEECCCCHHHHHHCC
Q ss_conf 9998488518999759
Q gi|254780775|r 14 IGIIMDGNGRWAAARG 29 (243)
Q Consensus 14 IaiImDGNrRwAk~~g 29 (243)
+.=+++|||||++...
T Consensus 34 l~~Ll~gN~~f~~~~~ 49 (243)
T 2w3q_A 34 IREVLEGNRYWARKVT 49 (243)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999997412
No 41
>1fvp_A Flavoprotein 390, FP390; flavin-binding protein; HET: FMA; 2.70A {Photobacterium phosphoreum} SCOP: c.1.16.2
Probab=21.47 E-value=41 Score=14.14 Aligned_cols=138 Identities=12% Similarity=0.070 Sum_probs=66.5
Q ss_pred CCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHH----HHHHHCCC-----C-EEEEEECCCCCCCCCHHHHHHHH
Q ss_conf 88269998488518999759987798999999999999----99997698-----6-89997202336532301248888
Q gi|254780775|r 10 PPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIV----AAAAEVGI-----K-NLTIFAFSINNWRRPVSEISELV 79 (243)
Q Consensus 10 ~P~HIaiImDGNrRwAk~~gl~~~~Gh~~G~~~l~~ii----~~~~~~gI-----~-~lTvyafS~eN~~R~~~Ev~~L~ 79 (243)
.|-.||--=..--+||-++|++...+...+.+.+.+.+ +.+.+.|- . .++++++-.|+-.+-.++....+
T Consensus 70 p~i~vaa~S~~s~~~AA~~Gl~~~~~~~~~~e~~~~~~~~yr~~a~~~g~~~~~~~~~~~~~v~vaed~e~A~~~~~~~l 149 (231)
T 1fvp_A 70 EKLYVLATSENTVDIAAKYALPLVFKWDDINEERLKLLSFYNASASKYNKNIDLVRHQLMLHVNVNEAETVAKEELKLYI 149 (231)
T ss_dssp TEEEEECCSSHHHHHHHHTTCCEEECSSSCHHHHHHHHHHHHHHHHHTTCCCSSCCEEEEECCEECSSHHHHHHHHHHHH
T ss_pred CCEEEEECCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHH
T ss_conf 99899948889999999839988983479999999999999999998388976551799999996599899999999999
Q ss_pred HHHHHHHHHCCCCC----CCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCH-HHHHHHHHHHHHHH
Q ss_conf 98886310000100----00283263138744510000235899987420254311589724881-57899877876436
Q gi|254780775|r 80 KLIKSFLKKGFYSL----KKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGLNLFIAFNYSS-RDEISRAIKNIFQD 154 (243)
Q Consensus 80 ~l~~~~l~~~~~~~----~~~~iki~~iGd~~~lp~~i~~~i~~~e~~T~~n~~~~Lnia~~Ygg-r~EI~~A~k~l~~~ 154 (243)
..++....... .+.-+...++|. |+++.+.|.+......+...+ .+|+.--+ ++++.+..+.+.+.
T Consensus 150 ---~~y~~~~~~~~~~~~~d~l~~~~ivGt----peev~e~I~~l~~e~~g~~~~--lL~f~~m~~~e~~~~~~~~~~~~ 220 (231)
T 1fvp_A 150 ---ENYVACTQPSNFNGSIDSIIQSNVTGS----YKDCLSYVANLAGKFDNTVDF--LLCFESMQDQNKKKSVMIDLNNQ 220 (231)
T ss_dssp ---HHHHHHSCCSSTTTCSHHHHHHSCEES----SHHHHHHHHHHHHHTTTCEEE--EECCCSCCCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHCCCCCHHHHHHHHHCCCCCCC----HHHHHHHHHHHHHHHCCCCEE--EEECCCCCCHHHHHHHHHHHHHH
T ss_conf ---999974056422455554303550218----899999999999971797659--99538889999999999999997
Q ss_pred HH
Q ss_conf 76
Q gi|254780775|r 155 IE 156 (243)
Q Consensus 155 ~~ 156 (243)
|.
T Consensus 221 V~ 222 (231)
T 1fvp_A 221 VI 222 (231)
T ss_dssp HH
T ss_pred HH
T ss_conf 31
No 42
>1xho_A Chorismate mutase; southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI, structural genomics; 2.20A {Clostridium thermocellum} SCOP: d.79.1.2
Probab=21.34 E-value=41 Score=14.12 Aligned_cols=37 Identities=16% Similarity=0.296 Sum_probs=25.4
Q ss_pred EEEECCCHHHHHHHHHHHHHHHH-HCCCCCHHHHHHHH
Q ss_conf 89724881578998778764367-64896877811553
Q gi|254780775|r 133 FIAFNYSSRDEISRAIKNIFQDI-ESGSVCSHDVDSSL 169 (243)
Q Consensus 133 nia~~Yggr~EI~~A~k~l~~~~-~~~~~~~~~I~~~~ 169 (243)
-+.+.-..+++|..|++.++++. +.+.++++||-.-.
T Consensus 38 AtTv~~nt~e~I~~At~eLl~eii~~N~l~~edIiSv~ 75 (148)
T 1xho_A 38 ATTVSDNTADEIVAETQKLLKEMAEKNGLEEDDIISII 75 (148)
T ss_dssp EEECSSSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred CEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEEE
T ss_conf 35528789999999999999999997599978989999
No 43
>3eyx_A Carbonic anhydrase; rossmann fold, cytoplasm, lyase, metal-binding, nucleus, zinc; 2.04A {Saccharomyces cerevisiae}
Probab=20.92 E-value=10 Score=17.95 Aligned_cols=13 Identities=31% Similarity=0.667 Sum_probs=10.4
Q ss_pred EECCCCHHHHHHC
Q ss_conf 9848851899975
Q gi|254780775|r 16 IIMDGNGRWAAAR 28 (243)
Q Consensus 16 iImDGNrRwAk~~ 28 (243)
=+++||+|||...
T Consensus 15 ~Ll~gN~~f~~~~ 27 (216)
T 3eyx_A 15 DILAANAKWASQM 27 (216)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999740
No 44
>2ob5_A AGR_C_3656P, hypothetical protein ATU2016; putavite sugar binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.60A {Agrobacterium tumefaciens str} SCOP: c.133.1.1
Probab=20.49 E-value=42 Score=14.07 Aligned_cols=53 Identities=15% Similarity=0.132 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEECCCCCCC
Q ss_conf 8998778764367648968778115531011336787765269945785213365640
Q gi|254780775|r 143 EISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVPDPDLIIRTGGEKRLSDFLLW 200 (243)
Q Consensus 143 EI~~A~k~l~~~~~~~~~~~~~I~~~~i~~~L~~~~~p~pDLlIRTsGe~RLSnFllw 200 (243)
++..................+.|.-..|.+.. ...-.+||||--+.=+|++|-
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~I~h~~Fy~~a-----k~a~aVVrTGE~~pYaNiIL~ 146 (153)
T 2ob5_A 94 PVQVEVQQEIDAAEGKSAPMYGIERFAFYEKA-----KQAYCVITTGETRFYGCFLLT 146 (153)
T ss_dssp HHHHHHHHHHHHHHTSCCCCEEECHHHHHHHH-----HTSSEEEECSCCSTTCCEEEE
T ss_pred HHHHHHHHHHHHHCCCCCCEEEECHHHHHHHH-----HCCCEEEECCCCCCEEEEEEE
T ss_conf 78999999999843888863452699999997-----168799988999754579987
No 45
>3gza_A Putative alpha-L-fucosidase; NP_812709.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE EPE; 1.60A {Bacteroides thetaiotaomicron vpi-5482}
Probab=20.02 E-value=22 Score=15.81 Aligned_cols=24 Identities=17% Similarity=0.414 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 99999999999976986899972023
Q gi|254780775|r 40 IEVFNEIVAAAAEVGIKNLTIFAFSI 65 (243)
Q Consensus 40 ~~~l~~ii~~~~~~gI~~lTvyafS~ 65 (243)
-+.+.++.+.|.+.|++.- +| +|.
T Consensus 108 rDiv~el~~A~rk~Glk~G-~Y-~S~ 131 (443)
T 3gza_A 108 GDIVRDFVNSCRKYGLQPG-IY-IGI 131 (443)
T ss_dssp CCHHHHHHHHHHHHTCEEE-EE-ECC
T ss_pred CCHHHHHHHHHHHHCCCEE-EE-EEE
T ss_conf 6879999999987098469-99-840
Done!