HHSEARCH alignment of GI: 254780775 and SCOP domain: d1f75a_

Alignment
>d1f75a_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase {Micrococcus luteus [TaxId: 1270]}
Probab=100.00  E-value=0  Score=618.10  Aligned_cols=228  Identities=43%  Similarity=0.770  Sum_probs=224.9

Q ss_pred             HCCCCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             20689882699984885189997599877989999999999999999769868999720233653230124888898886
Q gi|254780775|r    5 MMSSSPPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKS   84 (243)
Q Consensus         5 ~~~~~~P~HIaiImDGNrRwAk~~gl~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~   84 (243)
                      |.++++|+|||||||||||||+++|++..+||++|++++.++++||.++||++|||||||+|||+||++||++||+|+..
T Consensus         2 i~~~~lP~HvAiImDGNrRwAk~~g~~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafSteN~~R~~~Ev~~Lm~l~~~   81 (229)
T d1f75a_           2 INAAQIPKHIAIIMDGNGRWAKQKKMPRIKGHYEGMQTVRKITRYASDLGVKYLTLYAFSTENWSRPKDEVNYLMKLPGD   81 (229)
T ss_dssp             CCSTTSCSEEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEC------------CGGGTHHHH
T ss_pred             CCCCCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHCCCCHHHHHHHHHHHHH
T ss_conf             78467998689965385899987799765899999999999999987547766898632143215616889999988999


Q ss_pred             HHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf             31000010000283263138744510000235899987420254311589724881578998778764367648968778
Q gi|254780775|r   85 FLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHD  164 (243)
Q Consensus        85 ~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~l~~~~~~~~~~~~~  164 (243)
                      ++.+..+.+.+++|++++||+++.||+++++.+.++|+.|++|++++||||+|||||+||++|++++++++.++.+++++
T Consensus        82 ~l~~~~~~~~~~~iri~~iG~~~~lp~~l~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~~~i~~~~~~~~~~~~~  161 (229)
T d1f75a_          82 FLNTFLPELIEKNVKVETIGFIDDLPDHTKKAVLEAKEKTKHNTGLTLVFALNYGGRKEIISAVQLIAERYKSGEISLDE  161 (229)
T ss_dssp             HHHHHHHHHHHTTCEEEEESCGGGSCHHHHHHHHHHHHTTTTCCSCEEEEECSCCHHHHHHHHHHHHHHHHHTTSSCGGG
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf             99887666654200100133223436888888999999704799739999626763146788888877641011235135


Q ss_pred             HHHHHHCCCCCCCCCCCCCEEEECCCCEECCCCCCCHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             11553101133678776526994578521336564011355388636878888989999999998630
Q gi|254780775|r  165 VDSSLIAKYLDTSDVPDPDLIIRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLR  232 (243)
Q Consensus       165 I~~~~i~~~L~~~~~p~pDLlIRTsGe~RLSnFllwq~~ysEl~F~~~lWPdf~~~dl~~~i~~y~~r  232 (243)
                      |+++.|.++|+++++||||||||||||+|||||||||++||||||+|++||||+..||..||.+||+|
T Consensus       162 i~e~~~~~~L~t~~~PdpDLlIRTsGe~RLSnFLLWQ~aYsEl~F~d~lWPdf~~~dl~~ai~~y~~R  229 (229)
T d1f75a_         162 ISETHFNEYLFTANMPDPELLIRTSGEERLSNFLIWQCSYSEFVFIDEFWPDFNEESLAQCISIYQNR  229 (229)
T ss_dssp             CSHHHHGGGSTTTTSCCCSEEEECTTCCBCCSCSTTTTTTCEEEECCSCGGGCCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHCC
T ss_conf             66766997367889989665884599601002013301355799778888669999999999998659


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Undecaprenyl diphosphate synthase
superfamily: Undecaprenyl diphosphate synthase
family: Undecaprenyl diphosphate synthase
domain: Undecaprenyl diphosphate synthase
species: Micrococcus luteus [TaxId: 1270]